Additional file 2: Table S2. of Transcriptome analysis reveals a ribosome constituents disorder involved in the RPL5 downregulated zebrafish model of Diamond-Blackfan anemia

Additional file 6: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles Sagerstrรถm (5454440)

June 2018

Figure S4. Comparison between RNA-seq analyses of Hoxa1 mutant mouse embryos and hoxb1b mutant zebra...

Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia

Zhang, Zhaojun
Jia, Haibo
Zhang, Qian
Wan, Yang
Song, Binfeng
Jia, Qiong
Liu, Hanzhi
Zhu, Xiaofan
Fang, Xiangdong

December 2014

AbstractTo comprehensively reflect the roles of Rpl11 on the transcriptome of zebrafish model of Dia...

Additional file 1: Figure S1. of High fat plus high cholesterol diet lead to hepatic steatosis in zebrafish larvae: a novel model for screening anti-hepatic steatosis drugs

Wencong Dai (3463823)
Kunyuan Wang (3463829)
Xinchun Zheng (3463832)
Xiaohui Chen (139673)
Wenqing Zhang (56658)
Yiyue Zhang (3463826)
Jinlin Hou (59138)
Li Liu (75607)

November 2015

HF and HFC diets lead to hepatic steatosis in zebrafish larvae. Figure S2. Lipid accumulation in the...

Additional file 1: Table S1. of Transcriptome analysis reveals a ribosome constituents disorder involved in the RPL5 downregulated zebrafish model of Diamond-Blackfan anemia

Yang Wan (323627)
Qian Zhang (49333)
Zhaojun Zhang (107381)
Binfeng Song (3470087)
Xiaomin Wang (102596)
Yingchi Zhang (607489)
Qiong Jia (447604)
Tao Cheng (1235148)
Xiaofan Zhu (447606)
Anskar Leung (3470090)
Weiping Yuan (278358)
Haibo Jia (151612)
Xiangdong Fang (180671)

March 2016

Up-regulated genes in RPL5 MO (fold-change > 2 and p-value < 0.05) showed coordinated regulatory tre...

Additional file 3: Table S2. of Whole organism transcriptome analysis of zebrafish models of Bardet-Biedl Syndrome and Alström Syndrome provides mechanistic insight into shared and divergent phenotypes

Timothy Hostelley (3564659)
Sukanya Lodh (3564662)
Norann Zaghloul (3564656)

May 2016

Differentially expressed genes in BBS model. All genes exhibiting significant changes in bbs1-deplet...

Additional file 5: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles SagerstrĂśm (4968835)

June 2018

Table S2. Detailed analysis of WT and hoxb1b mutant RNA-seq data.Â 866 differentially expressed gene...

Additional file 12: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles SagerstrĂśm (4968835)

June 2018

Table S3. Detailed analysis of WT and gas6 mutants RNA-seq data.Â 1590 differentially expressed gene...

Transcriptome Analysis of the Zebrafish Model of Diamond-Blackfan Anemia from RPS19 Deficiency via p53-Dependent and-Independent Pathways

Qiong Jia
Qian Zhang
Zhaojun Zhang
Yaqin Wang
Wanguang Zhang
Yang Zhou
Yang Wan
Tao Cheng
Xiaofan Zhu
Xiangdong Fang
Weiping Yuan
Haibo Jia

August 2016

Diamond-Blackfan anemia (DBA) is a rare inherited bone marrow failure syndrome that is characterized...

Additional file 2: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles SagerstrĂśm (4968835)

June 2018

Table S1. Identification of additional r4, r5 and r6 genes. This file represents the data downloaded...

Additional file 1: of Targeted gene knockin in zebrafish using the 28S rDNA-specific non-LTR-retrotransposon R2Ol

Azusa Kuroki-Kami (6726689)
Narisu Nichuguti (6726692)
Haruka Yatabe (6726695)
Sayaka Mizuno (6726698)
Shoji Kawamura (78038)
Haruhiko Fujiwara (5064)

May 2019

Figure S1. Comparison of R2 element insertion site. Figure S2. Nine clones of R2Ol obtained from med...

Additional file 1: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

David Greenald (3432695)
Justin Jeyakani (411628)
Bernd Pelster (751355)
Ian Sealy (3432692)
Sinnakaruppan Mathavan (84076)
Fredericus van Eeden (3432698)

November 2015

Gene Expression Changes in vhl mutant zebrafish. The list of fully-annotated genes which were differ...

Additional file 1: of Transcripts within rod photoreceptors of the Zebrafish retina

Chi Sun (348095)
Carlos Galicia (4841790)
Deborah Stenkamp (4841787)

February 2018

Supplemental Figure S1. A. Multidimensional scaling (MDS) plot to visualize the level of similarity ...

Additional file 8: Table S1. of Progenitor potential of nkx6.1-expressing cells throughout zebrafish life and during beta cell regeneration

Aurélie Ghaye (116951)
David Bergemann (3562187)
Estefania Tarifeño-Saldivia (3562202)
Lydie Flasse (3562190)
Virginie Von Berg (173736)
Bernard Peers (61486)
Marianne Voz (3562193)
Isabelle Manfroid (61481)

September 2015

Duct-specific genes listed by decreased expression level. We found 293 genes corresponding to the fo...

Additional file 2: Table S1. of Subfunctionalization of peroxisome proliferator response elements accounts for retention of duplicated fabp1 genes in zebrafish

Robert Laprairie (3468008)
Eileen Denovan-Wright (3468005)
Jonathan Wright (239490)

July 2016

Synthetic oligonucleotides used for cloning fabp1 (spotted gar), fabp1a (zebrafish), fabp1b.1 (zebra...

Additional file 8: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles Sagerstrรถm (5454440)

June 2018

Figure S6. Genotyping data for sall4, egfl6, celf2 and greb1l mutants. sall4, egfl6, celf2 and greb1...

Additional file 6: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles Sagerstrรถm (5454440)

June 2018

Figure S4. Comparison between RNA-seq analyses of Hoxa1 mutant mouse embryos and hoxb1b mutant zebra...

Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia

Zhang, Zhaojun
Jia, Haibo
Zhang, Qian
Wan, Yang
Song, Binfeng
Jia, Qiong
Liu, Hanzhi
Zhu, Xiaofan
Fang, Xiangdong

December 2014

AbstractTo comprehensively reflect the roles of Rpl11 on the transcriptome of zebrafish model of Dia...

Additional file 1: Figure S1. of High fat plus high cholesterol diet lead to hepatic steatosis in zebrafish larvae: a novel model for screening anti-hepatic steatosis drugs

Wencong Dai (3463823)
Kunyuan Wang (3463829)
Xinchun Zheng (3463832)
Xiaohui Chen (139673)
Wenqing Zhang (56658)
Yiyue Zhang (3463826)
Jinlin Hou (59138)
Li Liu (75607)

November 2015

HF and HFC diets lead to hepatic steatosis in zebrafish larvae. Figure S2. Lipid accumulation in the...

Additional file 1: Table S1. of Transcriptome analysis reveals a ribosome constituents disorder involved in the RPL5 downregulated zebrafish model of Diamond-Blackfan anemia

Yang Wan (323627)
Qian Zhang (49333)
Zhaojun Zhang (107381)
Binfeng Song (3470087)
Xiaomin Wang (102596)
Yingchi Zhang (607489)
Qiong Jia (447604)
Tao Cheng (1235148)
Xiaofan Zhu (447606)
Anskar Leung (3470090)
Weiping Yuan (278358)
Haibo Jia (151612)
Xiangdong Fang (180671)

March 2016

Up-regulated genes in RPL5 MO (fold-change > 2 and p-value < 0.05) showed coordinated regulatory tre...

Additional file 3: Table S2. of Whole organism transcriptome analysis of zebrafish models of Bardet-Biedl Syndrome and Alström Syndrome provides mechanistic insight into shared and divergent phenotypes

Timothy Hostelley (3564659)
Sukanya Lodh (3564662)
Norann Zaghloul (3564656)

May 2016

Differentially expressed genes in BBS model. All genes exhibiting significant changes in bbs1-deplet...

Additional file 5: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles SagerstrĂśm (4968835)

June 2018

Table S2. Detailed analysis of WT and hoxb1b mutant RNA-seq data.Â 866 differentially expressed gene...

Additional file 12: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles SagerstrĂśm (4968835)

June 2018

Table S3. Detailed analysis of WT and gas6 mutants RNA-seq data.Â 1590 differentially expressed gene...

Transcriptome Analysis of the Zebrafish Model of Diamond-Blackfan Anemia from RPS19 Deficiency via p53-Dependent and-Independent Pathways

Qiong Jia
Qian Zhang
Zhaojun Zhang
Yaqin Wang
Wanguang Zhang
Yang Zhou
Yang Wan
Tao Cheng
Xiaofan Zhu
Xiangdong Fang
Weiping Yuan
Haibo Jia

August 2016

Diamond-Blackfan anemia (DBA) is a rare inherited bone marrow failure syndrome that is characterized...

Additional file 2: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles SagerstrĂśm (4968835)

June 2018

Table S1. Identification of additional r4, r5 and r6 genes. This file represents the data downloaded...

Additional file 1: of Targeted gene knockin in zebrafish using the 28S rDNA-specific non-LTR-retrotransposon R2Ol

Azusa Kuroki-Kami (6726689)
Narisu Nichuguti (6726692)
Haruka Yatabe (6726695)
Sayaka Mizuno (6726698)
Shoji Kawamura (78038)
Haruhiko Fujiwara (5064)

May 2019

Figure S1. Comparison of R2 element insertion site. Figure S2. Nine clones of R2Ol obtained from med...

Additional file 1: of Genome-wide mapping of Hif-1Îą binding sites in zebrafish

David Greenald (3432695)
Justin Jeyakani (411628)
Bernd Pelster (751355)
Ian Sealy (3432692)
Sinnakaruppan Mathavan (84076)
Fredericus van Eeden (3432698)

November 2015

Gene Expression Changes in vhl mutant zebrafish. The list of fully-annotated genes which were differ...

Additional file 1: of Transcripts within rod photoreceptors of the Zebrafish retina

Chi Sun (348095)
Carlos Galicia (4841790)
Deborah Stenkamp (4841787)

February 2018

Supplemental Figure S1. A. Multidimensional scaling (MDS) plot to visualize the level of similarity ...

Additional file 8: Table S1. of Progenitor potential of nkx6.1-expressing cells throughout zebrafish life and during beta cell regeneration

Aurélie Ghaye (116951)
David Bergemann (3562187)
Estefania Tarifeño-Saldivia (3562202)
Lydie Flasse (3562190)
Virginie Von Berg (173736)
Bernard Peers (61486)
Marianne Voz (3562193)
Isabelle Manfroid (61481)

September 2015

Duct-specific genes listed by decreased expression level. We found 293 genes corresponding to the fo...

Additional file 2: Table S1. of Subfunctionalization of peroxisome proliferator response elements accounts for retention of duplicated fabp1 genes in zebrafish

Robert Laprairie (3468008)
Eileen Denovan-Wright (3468005)
Jonathan Wright (239490)

July 2016

Synthetic oligonucleotides used for cloning fabp1 (spotted gar), fabp1a (zebrafish), fabp1b.1 (zebra...

Additional file 8: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles Sagerstrรถm (5454440)

June 2018

Figure S6. Genotyping data for sall4, egfl6, celf2 and greb1l mutants. sall4, egfl6, celf2 and greb1...

Additional file 6: of Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish

Priyanjali Ghosh (5454407)
Jennifer Maurer (4968838)
Charles Sagerstrรถm (5454440)

June 2018

Figure S4. Comparison between RNA-seq analyses of Hoxa1 mutant mouse embryos and hoxb1b mutant zebra...

Transcriptome analysis of Rpl11-deficient zebrafish model of Diamond-Blackfan Anemia

Zhang, Zhaojun
Jia, Haibo
Zhang, Qian
Wan, Yang
Song, Binfeng
Jia, Qiong
Liu, Hanzhi
Zhu, Xiaofan
Fang, Xiangdong

December 2014

AbstractTo comprehensively reflect the roles of Rpl11 on the transcriptome of zebrafish model of Dia...

Additional file 1: Figure S1. of High fat plus high cholesterol diet lead to hepatic steatosis in zebrafish larvae: a novel model for screening anti-hepatic steatosis drugs

Wencong Dai (3463823)
Kunyuan Wang (3463829)
Xinchun Zheng (3463832)
Xiaohui Chen (139673)
Wenqing Zhang (56658)
Yiyue Zhang (3463826)
Jinlin Hou (59138)
Li Liu (75607)

November 2015

HF and HFC diets lead to hepatic steatosis in zebrafish larvae. Figure S2. Lipid accumulation in the...

Additional file 2: Table S2. of Transcriptome analysis reveals a ribosome constituents disorder involved in the RPL5 downregulated zebrafish model of Diamond-Blackfan anemia

Abstract

Extracted data

Additional file 2: Table S2. of Transcriptome analysis reveals a ribosome constituents disorder involved in the RPL5 downregulated zebrafish model of Diamond-Blackfan anemia

Abstract

Extracted data

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