Additional file 4: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Additional file 6: of Development of F1 hybrid population and the high-density linkage map for European aspen (Populus tremula L.) using RADseq technology

Anatoly Zhigunov (4590538)
Pavel Ulianich (4590544)
Marina Lebedeva (4590553)
Peter Chang (153006)
Sergey Nuzhdin (153011)
Elena Potokina (266111)

November 2017

Detailed information on genetic distances and linkage phase between adjacent SNP markers in the pate...

Additional file 2: Table S1. of Quantitative trait locus mapping of Populus bark features and stem diameter

Roba Bdeir (4622830)
Wellington Muchero (137736)
Yordan Yordanov (386187)
Gerald Tuskan (471216)
Victor Busov (805788)
Oliver Gailing (86418)

November 2017

Pair-wise estimates of phenotypic correlations calculated as Pearson correlation coefficients betwee...

Additional file 22: Table S10. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

Matteo Dell’Acqua (3552404)
Daniel Gatti (3575003)
Giorgio Pea (529834)
Federica Cattonaro (158236)
Frederik Coppens (3191250)
Gabriele Magris (3574997)
Aye Hlaing (3574991)
Htay Aung (3575000)
Hilde Nelissen (3191247)
Joke Baute (3552395)
Elisabetta Frascaroli (3574994)
Gary Churchill (283616)
Dirk Inzé (254742)
Michele Morgante (83623)
Mario Pè (3552401)

September 2015

Genes whose expression in the founder lines matches founder effects (FDR <0.05) in ± 1 Mb QTL interv...

Additional file 3: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Cintia Ribeiro (3472373)
Cynthia Silva (3424709)
Derek Drost (3472379)
Evandro Novaes (91543)
Carolina Novaes (3472376)
Christopher Dervinis (3472370)
Matias Kirst (91546)

March 2016

QTL detected for root architecture traits and root biomass. Phenotypic variance explained by each QT...

Additional file 1: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Cintia Ribeiro (3472373)
Cynthia Silva (3424709)
Derek Drost (3472379)
Evandro Novaes (91543)
Carolina Novaes (3472376)
Christopher Dervinis (3472370)
Matias Kirst (91546)

March 2016

Cumulative number of roots formed in the parents of pedigree 52–124. Least-square means of number of...

Additional file 5: Table S3. of Quantitative trait locus mapping of Populus bark features and stem diameter

Roba Bdeir (4622830)
Wellington Muchero (137736)
Yordan Yordanov (386187)
Gerald Tuskan (471216)
Victor Busov (805788)
Oliver Gailing (86418)

November 2017

Number of candidate genes detected across QTL for the three traits. Note: The number of genes for ea...

Additional file 5: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Cintia Ribeiro (3472373)
Cynthia Silva (3424709)
Derek Drost (3472379)
Evandro Novaes (91543)
Carolina Novaes (3472376)
Christopher Dervinis (3472370)
Matias Kirst (91546)

March 2016

Genes differentially regulated among time point of sample collection. Genes differentially expressed...

Additional file 4: Table S2. of Quantitative trait locus mapping of Populus bark features and stem diameter

Roba Bdeir (4622830)
Wellington Muchero (137736)
Yordan Yordanov (386187)
Gerald Tuskan (471216)
Victor Busov (805788)
Oliver Gailing (86418)

November 2017

QTL associated with bark texture, diameter and bark thickness identified in Populus Family 52–124 in...

Additional file 3: of Genetic analysis of seedling root traits reveals the association of root trait with other agronomic traits in maize

Chuanli Ju (5636408)
Wei Zhang (405)
Ya Liu (205636)
Yufeng Gao (177513)
Xiaofan Wang (694132)
Jianbing Yan (109373)
Xiaohong Yang (109367)
Jiansheng Li (109370)

August 2018

Table S2. Root trait data of the RIL population at the three time points. (XLSX 135 kb

Additional file 5: of Genetic analysis of seedling root traits reveals the association of root trait with other agronomic traits in maize

Chuanli Ju (5636408)
Wei Zhang (405)
Ya Liu (205636)
Yufeng Gao (177513)
Xiaofan Wang (694132)
Jianbing Yan (109373)
Xiaohong Yang (109367)
Jiansheng Li (109370)

August 2018

Table S3. Statistical analysis of results (skewness and kurtosis) in relation to frequency distribut...

Additional file 2: of Genetic analysis of seedling root traits reveals the association of root trait with other agronomic traits in maize

Chuanli Ju (5636408)
Wei Zhang (405)
Ya Liu (205636)
Yufeng Gao (177513)
Xiaofan Wang (694132)
Jianbing Yan (109373)
Xiaohong Yang (109367)
Jiansheng Li (109370)

August 2018

Table S1. Root trait data of the parental lines at the three time points. (XLSX 27 kb

Linking transcript, QTL and association mapping to understand the genetic control of leaf size and shape in Populus

Trewin, Harriet

October 2008

Leaf size in Populus is an adaptive trait and early indicator of biomass yield. In order to investig...

Additional file 4: of Genetic analysis of seedling root traits reveals the association of root trait with other agronomic traits in maize

Chuanli Ju (5636408)
Wei Zhang (405)
Ya Liu (205636)
Yufeng Gao (177513)
Xiaofan Wang (694132)
Jianbing Yan (109373)
Xiaohong Yang (109367)
Jiansheng Li (109370)

August 2018

Figure S2. Frequency distributions of seedling root traits in the RIL population. The results of eig...

Additional file 5: of Genetic origin and composition of a natural hybrid poplar Populus × jrtyschensis from two distantly related species

Dechun Jiang (447324)
Jianju Feng (447323)
Miao Dong (447326)
Guili Wu (3311712)
Kangshan Mao (447330)
Jianquan Liu (200999)

April 2016

Estimates of genetic diversity (per locus) for each species and their hybrid based on 20 microsatell...

Additional file 1: of Consensus genetic linkage map construction and QTL mapping for plant height-related traits in linseed flax (Linum usitatissimum L.)

Jianping Zhang (161794)
Yan Long (118326)
Liming Wang (114648)
Zhao Dang (1330674)
Tianbao Zhang (4807641)
Xiaxia Song (4807638)
Zhanhai Dang (4807644)
Xinwu Pei (131020)

August 2018

The consensus linkage map from the two populations. The linkage map consisted of 15LGs. The markers ...

Additional file 6: of Development of F1 hybrid population and the high-density linkage map for European aspen (Populus tremula L.) using RADseq technology

Anatoly Zhigunov (4590538)
Pavel Ulianich (4590544)
Marina Lebedeva (4590553)
Peter Chang (153006)
Sergey Nuzhdin (153011)
Elena Potokina (266111)

November 2017

Detailed information on genetic distances and linkage phase between adjacent SNP markers in the pate...

Additional file 2: Table S1. of Quantitative trait locus mapping of Populus bark features and stem diameter

Roba Bdeir (4622830)
Wellington Muchero (137736)
Yordan Yordanov (386187)
Gerald Tuskan (471216)
Victor Busov (805788)
Oliver Gailing (86418)

November 2017

Pair-wise estimates of phenotypic correlations calculated as Pearson correlation coefficients betwee...

Additional file 22: Table S10. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

Matteo Dell’Acqua (3552404)
Daniel Gatti (3575003)
Giorgio Pea (529834)
Federica Cattonaro (158236)
Frederik Coppens (3191250)
Gabriele Magris (3574997)
Aye Hlaing (3574991)
Htay Aung (3575000)
Hilde Nelissen (3191247)
Joke Baute (3552395)
Elisabetta Frascaroli (3574994)
Gary Churchill (283616)
Dirk Inzé (254742)
Michele Morgante (83623)
Mario Pè (3552401)

September 2015

Genes whose expression in the founder lines matches founder effects (FDR <0.05) in ± 1 Mb QTL interv...

Additional file 3: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Cintia Ribeiro (3472373)
Cynthia Silva (3424709)
Derek Drost (3472379)
Evandro Novaes (91543)
Carolina Novaes (3472376)
Christopher Dervinis (3472370)
Matias Kirst (91546)

March 2016

QTL detected for root architecture traits and root biomass. Phenotypic variance explained by each QT...

Additional file 1: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Cintia Ribeiro (3472373)
Cynthia Silva (3424709)
Derek Drost (3472379)
Evandro Novaes (91543)
Carolina Novaes (3472376)
Christopher Dervinis (3472370)
Matias Kirst (91546)

March 2016

Cumulative number of roots formed in the parents of pedigree 52–124. Least-square means of number of...

Additional file 5: Table S3. of Quantitative trait locus mapping of Populus bark features and stem diameter

Roba Bdeir (4622830)
Wellington Muchero (137736)
Yordan Yordanov (386187)
Gerald Tuskan (471216)
Victor Busov (805788)
Oliver Gailing (86418)

November 2017

Number of candidate genes detected across QTL for the three traits. Note: The number of genes for ea...

Additional file 5: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Cintia Ribeiro (3472373)
Cynthia Silva (3424709)
Derek Drost (3472379)
Evandro Novaes (91543)
Carolina Novaes (3472376)
Christopher Dervinis (3472370)
Matias Kirst (91546)

March 2016

Genes differentially regulated among time point of sample collection. Genes differentially expressed...

Additional file 4: Table S2. of Quantitative trait locus mapping of Populus bark features and stem diameter

Roba Bdeir (4622830)
Wellington Muchero (137736)
Yordan Yordanov (386187)
Gerald Tuskan (471216)
Victor Busov (805788)
Oliver Gailing (86418)

November 2017

QTL associated with bark texture, diameter and bark thickness identified in Populus Family 52–124 in...

Additional file 3: of Genetic analysis of seedling root traits reveals the association of root trait with other agronomic traits in maize

Chuanli Ju (5636408)
Wei Zhang (405)
Ya Liu (205636)
Yufeng Gao (177513)
Xiaofan Wang (694132)
Jianbing Yan (109373)
Xiaohong Yang (109367)
Jiansheng Li (109370)

August 2018

Table S2. Root trait data of the RIL population at the three time points. (XLSX 135 kb

Additional file 5: of Genetic analysis of seedling root traits reveals the association of root trait with other agronomic traits in maize

Chuanli Ju (5636408)
Wei Zhang (405)
Ya Liu (205636)
Yufeng Gao (177513)
Xiaofan Wang (694132)
Jianbing Yan (109373)
Xiaohong Yang (109367)
Jiansheng Li (109370)

August 2018

Table S3. Statistical analysis of results (skewness and kurtosis) in relation to frequency distribut...

Additional file 2: of Genetic analysis of seedling root traits reveals the association of root trait with other agronomic traits in maize

Chuanli Ju (5636408)
Wei Zhang (405)
Ya Liu (205636)
Yufeng Gao (177513)
Xiaofan Wang (694132)
Jianbing Yan (109373)
Xiaohong Yang (109367)
Jiansheng Li (109370)

August 2018

Table S1. Root trait data of the parental lines at the three time points. (XLSX 27 kb

Linking transcript, QTL and association mapping to understand the genetic control of leaf size and shape in Populus

Trewin, Harriet

October 2008

Leaf size in Populus is an adaptive trait and early indicator of biomass yield. In order to investig...

Additional file 4: of Genetic analysis of seedling root traits reveals the association of root trait with other agronomic traits in maize

Chuanli Ju (5636408)
Wei Zhang (405)
Ya Liu (205636)
Yufeng Gao (177513)
Xiaofan Wang (694132)
Jianbing Yan (109373)
Xiaohong Yang (109367)
Jiansheng Li (109370)

August 2018

Figure S2. Frequency distributions of seedling root traits in the RIL population. The results of eig...

Additional file 5: of Genetic origin and composition of a natural hybrid poplar Populus × jrtyschensis from two distantly related species

Dechun Jiang (447324)
Jianju Feng (447323)
Miao Dong (447326)
Guili Wu (3311712)
Kangshan Mao (447330)
Jianquan Liu (200999)

April 2016

Estimates of genetic diversity (per locus) for each species and their hybrid based on 20 microsatell...

Additional file 1: of Consensus genetic linkage map construction and QTL mapping for plant height-related traits in linseed flax (Linum usitatissimum L.)

Jianping Zhang (161794)
Yan Long (118326)
Liming Wang (114648)
Zhao Dang (1330674)
Tianbao Zhang (4807641)
Xiaxia Song (4807638)
Zhanhai Dang (4807644)
Xinwu Pei (131020)

August 2018

The consensus linkage map from the two populations. The linkage map consisted of 15LGs. The markers ...

Additional file 6: of Development of F1 hybrid population and the high-density linkage map for European aspen (Populus tremula L.) using RADseq technology

Anatoly Zhigunov (4590538)
Pavel Ulianich (4590544)
Marina Lebedeva (4590553)
Peter Chang (153006)
Sergey Nuzhdin (153011)
Elena Potokina (266111)

November 2017

Detailed information on genetic distances and linkage phase between adjacent SNP markers in the pate...

Additional file 2: Table S1. of Quantitative trait locus mapping of Populus bark features and stem diameter

Roba Bdeir (4622830)
Wellington Muchero (137736)
Yordan Yordanov (386187)
Gerald Tuskan (471216)
Victor Busov (805788)
Oliver Gailing (86418)

November 2017

Pair-wise estimates of phenotypic correlations calculated as Pearson correlation coefficients betwee...

Additional file 22: Table S10. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

Matteo Dell’Acqua (3552404)
Daniel Gatti (3575003)
Giorgio Pea (529834)
Federica Cattonaro (158236)
Frederik Coppens (3191250)
Gabriele Magris (3574997)
Aye Hlaing (3574991)
Htay Aung (3575000)
Hilde Nelissen (3191247)
Joke Baute (3552395)
Elisabetta Frascaroli (3574994)
Gary Churchill (283616)
Dirk Inzé (254742)
Michele Morgante (83623)
Mario Pè (3552401)

September 2015

Genes whose expression in the founder lines matches founder effects (FDR <0.05) in ± 1 Mb QTL interv...

Additional file 4: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Abstract

Extracted data

Additional file 4: of Integration of genetic, genomic and transcriptomic information identifies putative regulators of adventitious root formation in Populus

Abstract

Extracted data

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