Additional file 1: of Effect of a diet enriched with omega-6 and omega-3 fatty acids on the pig liver transcriptome

Additional file 4: of Effect of diets supplemented with linseed alone or combined with vitamin E and selenium or with plant extracts, on Longissimus thoracis transcriptome in growing-finishing Italian Large White pigs

Rubina Sirri (5819540)
Marika Vitali (5273978)
Paolo Zambonelli (5819543)
Giulia Giannini (5990924)
Martina Zappaterra (4917289)
Domenico Lo Fiego (5990927)
Dalal Sami (5819549)
Roberta Davoli (4917286)

November 2018

Full results from the functional analysis performed using the Cytoscape software. (XLSX 24 kb

Additional file 9: Table S6. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

All the DEGs between IB × DU and Laiwu pig breeds. The DEGs were screened with absolute value of log...

Additional file 9: of A genome-wide landscape of mRNAs, lncRNAs, and circRNAs during subcutaneous adipogenesis in pigs

Xin Liu (43569)
Kaiqing Liu (3391595)
Baosen Shan (5919614)
Shengjuan Wei (5919617)
Dongfeng Li (192917)
Haiyin Han (5919620)
Wei Wei (21173)
Jie Chen (5892)
Honglin Liu (108352)
Lifan Zhang (391216)

November 2018

GO terms for upregulated and downregulated mRNAs, lncRNAs, and circRNAs from D4 vs D2. Terms marked ...

Additional file 1: of A porcine gluteus medius muscle genome-wide transcriptome analysis: dietary effects of omega-6 and omega-3 fatty acids on biological mechanisms

Magdalena Ogłuszka (3440390)
Agnieszka Szostak (3110271)
Marinus te Pas (3440378)
Ewa Poławska (3440381)
Paweł Urbański (3440387)
Tadeusz Blicharski (3440384)
Chandra Pareek (3440372)
Edyta Juszczuk-Kubiak (3440375)
Jenelle Dunkelberger (3440393)
Jarosław Horbańczuk (3110307)
Mariusz Pierzchała (3110292)

January 2017

Heatmap of global expression levels of mRNA in the muscle of pigs from control group (M-high) and pi...

Effect of a diet enriched with omega-6 and omega-3 fatty acids on the pig liver transcriptome

Szostak, Agnieszka
Ogłuszka, Magdalena
Pas, Te, Marinus F.W.
Poławska, Ewa
Urbański, Paweł
Juszczuk Kubiak, Edyta
Blicharski, Tadeusz
Pareek, Chandra Shekhar
Dunkelberger, Jenelle R.
Horbańczuk, Jarosław O.
Pierzchała, Mariusz

January 2016

The optimal ratio of omega-6 to omega-3 polyunsaturated fatty acids (PUFAs) is important for keeping...

Additional file 10: of A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Florence Gondret (768085)
Annie Vincent (176703)
Magalie Houée-Bigot (3464441)
Anne Siegel (205003)
Sandrine Lagarrigue (214977)
David Causeur (3443027)
Hélène Gilbert (407257)
Isabelle Louveau (844631)

March 2017

Genes participating to relevant GO biological processes specifically in adipose tissues. (DOCX 22 kb

Additional file 1: of Docosahexaenoic acid increases accumulation of adipocyte triacylglycerol through up-regulation of lipogenic gene expression in pigs

Chao-Wei Huang (1699669)
Yu-Jen Chen (323231)
Jui-Ting Yang (3724975)
Ching-Yi Chen (9297)
Kolapo Ajuwon (3724978)
Shuen-Ei Chen (657488)
Nan-Wei Su (1615114)
Yu-Shan Chen (3724981)
Harry Mersmann (3724984)
Shih-Torng Ding (3164640)

February 2017

Supplementary data: Methods. Figure S1. (a) The retention time of PUFA NO2. Mix standard, animal sou...

DataSheet1_RNA-seq transcriptome profiling of pigs’ liver in response to diet with different sources of fatty acids.zip

Simara Larissa Fanalli (14501657)
Bruna Pereira Martins da Silva (14501660)
Julia Dezen Gomes (13778363)
Mariah Castro Durval (14501663)
Vivian Vezzoni de Almeida (14501666)
Gabriel Costa Monteiro Moreira (5821850)
Bárbara Silva-Vignato (4222096)
Juliana Afonso (6451517)
Felipe André Oliveira Freitas (14501669)
James Mark Reecy (14501672)
James Eugene Koltes (14501675)
Dawn Koltes (4425106)
Dorian Garrick (3572441)
Luciana Correia de Almeida Regitano (11188308)
Júlio Cesar de Carvalho Balieiro (14501678)
Gerson Barreto Mourão (4680961)
Luiz Lehmann Coutinho (2994015)
Heidge Fukumasu (588307)
Severino Matias de Alencar (8952968)
Albino Luchiari Filho (14501681)
Aline Silva Mello Cesar (2994006)

February 2023

Pigs (Sus scrofa) are an animal model for metabolic diseases in humans. Pork is an important source ...

Additional file 6: of Effect of diets supplemented with linseed alone or combined with vitamin E and selenium or with plant extracts, on Longissimus thoracis transcriptome in growing-finishing Italian Large White pigs

Rubina Sirri (5819540)
Marika Vitali (5273978)
Paolo Zambonelli (5819543)
Giulia Giannini (5990924)
Martina Zappaterra (4917289)
Domenico Lo Fiego (5990927)
Dalal Sami (5819549)
Roberta Davoli (4917286)

November 2018

Complete list of pathways and biological processes obtained from the functional analysis by Cytoscap...

Additional file 5: Table S3. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The fat relevant differentially expressed genes (DEGs) with similar expression trend in the comparis...

A porcine gluteus medius muscle genome-wide transcriptome analysis: dietary effects of omega-6 and omega-3 fatty acids on biological mechanisms

Ogłuszka, Magdalena
Szostak, Agnieszka
te Pas, Marinus F. W.
Poławska, Ewa
Urbański, Paweł
Blicharski, Tadeusz
Pareek, Chandra S.
Juszczuk-Kubiak, Edyta
Dunkelberger, Jenelle R.
Horbańczuk, Jarosław O.
Pierzchała, Mariusz

January 2017

BACKGROUND: The level of omega-6 and omega-3 polyunsaturated fatty acids can affect many cellular sy...

Additional file 1: of Gastric infusion of short-chain fatty acids can improve intestinal barrier function in weaned piglets

H. Diao (5172236)
A. Jiao (6290168)
B. Yu (3635761)
X. Mao (6290171)
D. Chen (2807917)

February 2019

Table S1. Composition and nutrient level of experimental diets. Table S2. Primers and probes for rea...

Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition

Puig-Oliveras, A.
Ramayo-Caldas, Y.
Corominas, J.
Estelle, J.
Perez-Montarelo, D.
Hudson, N.J.
Casellas, J.
Folch Maria Ballester, J.M.

January 2014

Contains fulltext : 137788.pdf (publisher's version ) (Open Access)BACKGROUND: Bes...

Additional file 1: of Surplus dietary isoleucine intake enhanced monounsaturated fatty acid synthesis and fat accumulation in skeletal muscle of finishing pigs

Yanhong Luo (1678255)
Xin Zhang (35492)
Zhengpeng Zhu (6109511)
Ning Jiao (1457857)
Kai Qiu (776321)
Jingdong Yin (3190035)

December 2018

Table S1. Nutrient composition of the experimental diets (%, as-fed). (DOCX 17 kb

Additional file 1: of Investigation of allele-specific expression of genes involved in adipogenesis and lipid metabolism suggests complex regulatory mechanisms of PPARGC1A expression in porcine fat tissues

Monika Stachowiak (6031856)
Izabela Szczerbal (236308)
Krzysztof Flisikowski (133283)

November 2018

Genotype frequencies of rSNPs in PPARA, PPARG, PPARGC1A and SREBF genes in tested pig breeds. (DOC 4...

Additional file 4: of Effect of diets supplemented with linseed alone or combined with vitamin E and selenium or with plant extracts, on Longissimus thoracis transcriptome in growing-finishing Italian Large White pigs

Rubina Sirri (5819540)
Marika Vitali (5273978)
Paolo Zambonelli (5819543)
Giulia Giannini (5990924)
Martina Zappaterra (4917289)
Domenico Lo Fiego (5990927)
Dalal Sami (5819549)
Roberta Davoli (4917286)

November 2018

Full results from the functional analysis performed using the Cytoscape software. (XLSX 24 kb

Additional file 9: Table S6. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

All the DEGs between IB × DU and Laiwu pig breeds. The DEGs were screened with absolute value of log...

Additional file 9: of A genome-wide landscape of mRNAs, lncRNAs, and circRNAs during subcutaneous adipogenesis in pigs

Xin Liu (43569)
Kaiqing Liu (3391595)
Baosen Shan (5919614)
Shengjuan Wei (5919617)
Dongfeng Li (192917)
Haiyin Han (5919620)
Wei Wei (21173)
Jie Chen (5892)
Honglin Liu (108352)
Lifan Zhang (391216)

November 2018

GO terms for upregulated and downregulated mRNAs, lncRNAs, and circRNAs from D4 vs D2. Terms marked ...

Additional file 1: of A porcine gluteus medius muscle genome-wide transcriptome analysis: dietary effects of omega-6 and omega-3 fatty acids on biological mechanisms

Magdalena Ogłuszka (3440390)
Agnieszka Szostak (3110271)
Marinus te Pas (3440378)
Ewa Poławska (3440381)
Paweł Urbański (3440387)
Tadeusz Blicharski (3440384)
Chandra Pareek (3440372)
Edyta Juszczuk-Kubiak (3440375)
Jenelle Dunkelberger (3440393)
Jarosław Horbańczuk (3110307)
Mariusz Pierzchała (3110292)

January 2017

Heatmap of global expression levels of mRNA in the muscle of pigs from control group (M-high) and pi...

Effect of a diet enriched with omega-6 and omega-3 fatty acids on the pig liver transcriptome

Szostak, Agnieszka
Ogłuszka, Magdalena
Pas, Te, Marinus F.W.
Poławska, Ewa
Urbański, Paweł
Juszczuk Kubiak, Edyta
Blicharski, Tadeusz
Pareek, Chandra Shekhar
Dunkelberger, Jenelle R.
Horbańczuk, Jarosław O.
Pierzchała, Mariusz

January 2016

The optimal ratio of omega-6 to omega-3 polyunsaturated fatty acids (PUFAs) is important for keeping...

Additional file 10: of A transcriptome multi-tissue analysis identifies biological pathways and genes associated with variations in feed efficiency of growing pigs

Florence Gondret (768085)
Annie Vincent (176703)
Magalie Houée-Bigot (3464441)
Anne Siegel (205003)
Sandrine Lagarrigue (214977)
David Causeur (3443027)
Hélène Gilbert (407257)
Isabelle Louveau (844631)

March 2017

Genes participating to relevant GO biological processes specifically in adipose tissues. (DOCX 22 kb

Additional file 1: of Docosahexaenoic acid increases accumulation of adipocyte triacylglycerol through up-regulation of lipogenic gene expression in pigs

Chao-Wei Huang (1699669)
Yu-Jen Chen (323231)
Jui-Ting Yang (3724975)
Ching-Yi Chen (9297)
Kolapo Ajuwon (3724978)
Shuen-Ei Chen (657488)
Nan-Wei Su (1615114)
Yu-Shan Chen (3724981)
Harry Mersmann (3724984)
Shih-Torng Ding (3164640)

February 2017

Supplementary data: Methods. Figure S1. (a) The retention time of PUFA NO2. Mix standard, animal sou...

DataSheet1_RNA-seq transcriptome profiling of pigs’ liver in response to diet with different sources of fatty acids.zip

Simara Larissa Fanalli (14501657)
Bruna Pereira Martins da Silva (14501660)
Julia Dezen Gomes (13778363)
Mariah Castro Durval (14501663)
Vivian Vezzoni de Almeida (14501666)
Gabriel Costa Monteiro Moreira (5821850)
Bárbara Silva-Vignato (4222096)
Juliana Afonso (6451517)
Felipe André Oliveira Freitas (14501669)
James Mark Reecy (14501672)
James Eugene Koltes (14501675)
Dawn Koltes (4425106)
Dorian Garrick (3572441)
Luciana Correia de Almeida Regitano (11188308)
Júlio Cesar de Carvalho Balieiro (14501678)
Gerson Barreto Mourão (4680961)
Luiz Lehmann Coutinho (2994015)
Heidge Fukumasu (588307)
Severino Matias de Alencar (8952968)
Albino Luchiari Filho (14501681)
Aline Silva Mello Cesar (2994006)

February 2023

Pigs (Sus scrofa) are an animal model for metabolic diseases in humans. Pork is an important source ...

Additional file 6: of Effect of diets supplemented with linseed alone or combined with vitamin E and selenium or with plant extracts, on Longissimus thoracis transcriptome in growing-finishing Italian Large White pigs

Rubina Sirri (5819540)
Marika Vitali (5273978)
Paolo Zambonelli (5819543)
Giulia Giannini (5990924)
Martina Zappaterra (4917289)
Domenico Lo Fiego (5990927)
Dalal Sami (5819549)
Roberta Davoli (4917286)

November 2018

Complete list of pathways and biological processes obtained from the functional analysis by Cytoscap...

Additional file 5: Table S3. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

The fat relevant differentially expressed genes (DEGs) with similar expression trend in the comparis...

A porcine gluteus medius muscle genome-wide transcriptome analysis: dietary effects of omega-6 and omega-3 fatty acids on biological mechanisms

Ogłuszka, Magdalena
Szostak, Agnieszka
te Pas, Marinus F. W.
Poławska, Ewa
Urbański, Paweł
Blicharski, Tadeusz
Pareek, Chandra S.
Juszczuk-Kubiak, Edyta
Dunkelberger, Jenelle R.
Horbańczuk, Jarosław O.
Pierzchała, Mariusz

January 2017

BACKGROUND: The level of omega-6 and omega-3 polyunsaturated fatty acids can affect many cellular sy...

Additional file 1: of Gastric infusion of short-chain fatty acids can improve intestinal barrier function in weaned piglets

H. Diao (5172236)
A. Jiao (6290168)
B. Yu (3635761)
X. Mao (6290171)
D. Chen (2807917)

February 2019

Table S1. Composition and nutrient level of experimental diets. Table S2. Primers and probes for rea...

Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition

Puig-Oliveras, A.
Ramayo-Caldas, Y.
Corominas, J.
Estelle, J.
Perez-Montarelo, D.
Hudson, N.J.
Casellas, J.
Folch Maria Ballester, J.M.

January 2014

Contains fulltext : 137788.pdf (publisher's version ) (Open Access)BACKGROUND: Bes...

Additional file 1: of Surplus dietary isoleucine intake enhanced monounsaturated fatty acid synthesis and fat accumulation in skeletal muscle of finishing pigs

Yanhong Luo (1678255)
Xin Zhang (35492)
Zhengpeng Zhu (6109511)
Ning Jiao (1457857)
Kai Qiu (776321)
Jingdong Yin (3190035)

December 2018

Table S1. Nutrient composition of the experimental diets (%, as-fed). (DOCX 17 kb

Additional file 1: of Investigation of allele-specific expression of genes involved in adipogenesis and lipid metabolism suggests complex regulatory mechanisms of PPARGC1A expression in porcine fat tissues

Monika Stachowiak (6031856)
Izabela Szczerbal (236308)
Krzysztof Flisikowski (133283)

November 2018

Genotype frequencies of rSNPs in PPARA, PPARG, PPARGC1A and SREBF genes in tested pig breeds. (DOC 4...

Additional file 4: of Effect of diets supplemented with linseed alone or combined with vitamin E and selenium or with plant extracts, on Longissimus thoracis transcriptome in growing-finishing Italian Large White pigs

Rubina Sirri (5819540)
Marika Vitali (5273978)
Paolo Zambonelli (5819543)
Giulia Giannini (5990924)
Martina Zappaterra (4917289)
Domenico Lo Fiego (5990927)
Dalal Sami (5819549)
Roberta Davoli (4917286)

November 2018

Full results from the functional analysis performed using the Cytoscape software. (XLSX 24 kb

Additional file 9: Table S6. of Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Yuding Wang (4511173)
Cai Ma (4511176)
Yi Sun (118759)
Yi Li (1144)
Li Kang (494757)
Yunliang Jiang (494758)

October 2017

All the DEGs between IB × DU and Laiwu pig breeds. The DEGs were screened with absolute value of log...

Additional file 9: of A genome-wide landscape of mRNAs, lncRNAs, and circRNAs during subcutaneous adipogenesis in pigs

Xin Liu (43569)
Kaiqing Liu (3391595)
Baosen Shan (5919614)
Shengjuan Wei (5919617)
Dongfeng Li (192917)
Haiyin Han (5919620)
Wei Wei (21173)
Jie Chen (5892)
Honglin Liu (108352)
Lifan Zhang (391216)

November 2018

GO terms for upregulated and downregulated mRNAs, lncRNAs, and circRNAs from D4 vs D2. Terms marked ...

Additional file 1: of Effect of a diet enriched with omega-6 and omega-3 fatty acids on the pig liver transcriptome

Abstract

Extracted data

Additional file 1: of Effect of a diet enriched with omega-6 and omega-3 fatty acids on the pig liver transcriptome

Abstract

Extracted data

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