Calling patterns of the somatic variant callers.

Confidence-based Somatic Mutation Evaluation and Prioritization

Lower, M.
Renard, B.Y.
Graaf, J. de
Wagner, M.
Paret, C.
Kneip, C.
Tureci, O.
Diken, M.
Britten, C.
Kreiter, S.
Koslowski, M.
Castle, J.C.
Sahin, U.

January 2012

Contains fulltext : 110677.pdf (publisher's version ) (Open Access)Next generation...

Frequency and signature of somatic variants in 1461 human brain exomes

Wei, W
Keogh, MJ
Aryaman, J
Golder, Z
Kullar, PJ
Wilson, I
Talbot, K
Turner, MR
McKenzie, C-A
Troakes, C
Attems, J
Smith, C
Sarraj, SA
Morris, CM
Ansorge, O
Jones, NS
Ironside, JW
Chinnery, PF

January 2018

Purpose To systematically study somatic variants arising during development in the human brain acros...

Mutational signatures: the patterns of somatic mutations hidden in cancer genomes

Alexandrov, Ludmil B
Stratton, Michael R

February 2014

All cancers originate from a single cell that starts to behave abnormally due to the acquired somati...

Genome analysis SomaticSignatures: inferring mutational signatures from single-nucleotide variants

Julian S. Gehring
Bernd Fischer
Michael Lawrence
Wolfgang Huber

September 2016

Summary: Mutational signatures are patterns in the occurrence of somatic single-nucleotide vari-ants...

A review of somatic single nucleotide variant calling algorithms for next-generation sequencing data

Chang Xu

January 2018

Detection of somatic mutations holds great potential in cancer treatment and has been a very active ...

Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data.

Anne Bruun Krøigård
Mads Thomassen
Anne-Vibeke Lænkholm
Torben A Kruse
Martin Jakob Larsen

Next generation sequencing is extensively applied to catalogue somatic mutations in cancer, in resea...

Analysis of OCSCC somatic mutations.

Andrew P. Zammit (5848625)
Rohit Sinha (5848628)
Caroline L. Cooper (5848631)
Christopher F. L. Perry (5848634)
Ian H. Frazer (239570)
Zewen K. Tuong (5848637)

October 2018

Somatic mutations were determined using paired OCSCC tumor/somatic DNA samples (n = 25), and defined...

SomaticSignatures: inferring mutational signatures from single-nucleotide variants

Julian S. Gehring
Bernd Fischer
Michael Lawrence

January 2015

Summary Mutational signatures are patterns in the occurrence of somatic single nucleotide variants (...

Detection and classification of somatic structural variants, and its application in the study of neuronal development

Planas Fèlix, Mercè

October 2020

[eng] The identification and analysis of genomic variation across individuals has been central in bi...

Improving somatic variant identification through integration of genome and exome data

Vinaya Vijayan
Siu-Ming Yiu
Liqing Zhang

October 2017

Abstract Background Cost-effective high-throughput sequencing technologies, together with efficient ...

Variant caller sensitivity.

Anne Bruun Krøigård (2579251)
Mads Thomassen (395200)
Anne-Vibeke Lænkholm (69306)
Torben A. Kruse (92928)
Martin Jakob Larsen (2579254)

March 2016

<p>Variant caller sensitivity for detecting the manually curated mutations for SNVs and indels are s...

detect somatic mutations using SomaticSeq

Li Tai Fang
Pegah Tootoonchi Afshar
Aparna Chhibber
Marghoob Mohiyuddin
Yu Fan
John C. Mu
Greg Gibeling
Sharon Barr
Narges Bani Asadi
Mark B. Gerstein
Daniel C. Koboldt
Wenyi Wang
Wing H. Wong
Hugo Yk Lam

August 2016

SomaticSeq is an accurate somatic mutation detection pipeline implementing a stochastic boosting alg...

Statistical assessment of somatic mutations and genomic variability using DNA sequence data

Rehammar, Anna

January 2016

The development of new DNA sequencing techniques have made it possible to generate high-resolution g...

Table1_Towards an accurate and robust analysis pipeline for somatic mutation calling.XLSX

Jingjie Jin (2541421)
Zixi Chen (5155913)
Jinchao Liu (10915811)
Hongli Du (91186)
Gong Zhang (69122)

November 2022

Accurate and robust somatic mutation detection is essential for cancer treatment, diagnostics and re...

Comparative analysis of germline and somatic microlesion mutational spectra in 17 human tumor suppressor genes

Ivanov, Dobril
Hamby, Stephen E.
Stenson, Peter Daniel
Phillips, Andrew David
Kehrer-Sawatzki, Hildegard
Cooper, David Neil
Chuzhanova, Nadia

June 2011

Mutations associated with tumorigenesis may either arise somatically or can be inherited through the...

Confidence-based Somatic Mutation Evaluation and Prioritization

Lower, M.
Renard, B.Y.
Graaf, J. de
Wagner, M.
Paret, C.
Kneip, C.
Tureci, O.
Diken, M.
Britten, C.
Kreiter, S.
Koslowski, M.
Castle, J.C.
Sahin, U.

January 2012

Contains fulltext : 110677.pdf (publisher's version ) (Open Access)Next generation...

Frequency and signature of somatic variants in 1461 human brain exomes

Wei, W
Keogh, MJ
Aryaman, J
Golder, Z
Kullar, PJ
Wilson, I
Talbot, K
Turner, MR
McKenzie, C-A
Troakes, C
Attems, J
Smith, C
Sarraj, SA
Morris, CM
Ansorge, O
Jones, NS
Ironside, JW
Chinnery, PF

January 2018

Purpose To systematically study somatic variants arising during development in the human brain acros...

Mutational signatures: the patterns of somatic mutations hidden in cancer genomes

Alexandrov, Ludmil B
Stratton, Michael R

February 2014

All cancers originate from a single cell that starts to behave abnormally due to the acquired somati...

Genome analysis SomaticSignatures: inferring mutational signatures from single-nucleotide variants

Julian S. Gehring
Bernd Fischer
Michael Lawrence
Wolfgang Huber

September 2016

Summary: Mutational signatures are patterns in the occurrence of somatic single-nucleotide vari-ants...

A review of somatic single nucleotide variant calling algorithms for next-generation sequencing data

Chang Xu

January 2018

Detection of somatic mutations holds great potential in cancer treatment and has been a very active ...

Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data.

Anne Bruun Krøigård
Mads Thomassen
Anne-Vibeke Lænkholm
Torben A Kruse
Martin Jakob Larsen

Next generation sequencing is extensively applied to catalogue somatic mutations in cancer, in resea...

Analysis of OCSCC somatic mutations.

Andrew P. Zammit (5848625)
Rohit Sinha (5848628)
Caroline L. Cooper (5848631)
Christopher F. L. Perry (5848634)
Ian H. Frazer (239570)
Zewen K. Tuong (5848637)

October 2018

Somatic mutations were determined using paired OCSCC tumor/somatic DNA samples (n = 25), and defined...

SomaticSignatures: inferring mutational signatures from single-nucleotide variants

Julian S. Gehring
Bernd Fischer
Michael Lawrence

January 2015

Summary Mutational signatures are patterns in the occurrence of somatic single nucleotide variants (...

Detection and classification of somatic structural variants, and its application in the study of neuronal development

Planas Fèlix, Mercè

October 2020

[eng] The identification and analysis of genomic variation across individuals has been central in bi...

Improving somatic variant identification through integration of genome and exome data

Vinaya Vijayan
Siu-Ming Yiu
Liqing Zhang

October 2017

Abstract Background Cost-effective high-throughput sequencing technologies, together with efficient ...

Variant caller sensitivity.

Anne Bruun Krøigård (2579251)
Mads Thomassen (395200)
Anne-Vibeke Lænkholm (69306)
Torben A. Kruse (92928)
Martin Jakob Larsen (2579254)

March 2016

<p>Variant caller sensitivity for detecting the manually curated mutations for SNVs and indels are s...

detect somatic mutations using SomaticSeq

Li Tai Fang
Pegah Tootoonchi Afshar
Aparna Chhibber
Marghoob Mohiyuddin
Yu Fan
John C. Mu
Greg Gibeling
Sharon Barr
Narges Bani Asadi
Mark B. Gerstein
Daniel C. Koboldt
Wenyi Wang
Wing H. Wong
Hugo Yk Lam

August 2016

SomaticSeq is an accurate somatic mutation detection pipeline implementing a stochastic boosting alg...

Statistical assessment of somatic mutations and genomic variability using DNA sequence data

Rehammar, Anna

January 2016

The development of new DNA sequencing techniques have made it possible to generate high-resolution g...

Table1_Towards an accurate and robust analysis pipeline for somatic mutation calling.XLSX

Jingjie Jin (2541421)
Zixi Chen (5155913)
Jinchao Liu (10915811)
Hongli Du (91186)
Gong Zhang (69122)

November 2022

Accurate and robust somatic mutation detection is essential for cancer treatment, diagnostics and re...

Comparative analysis of germline and somatic microlesion mutational spectra in 17 human tumor suppressor genes

Ivanov, Dobril
Hamby, Stephen E.
Stenson, Peter Daniel
Phillips, Andrew David
Kehrer-Sawatzki, Hildegard
Cooper, David Neil
Chuzhanova, Nadia

June 2011

Mutations associated with tumorigenesis may either arise somatically or can be inherited through the...

Confidence-based Somatic Mutation Evaluation and Prioritization

Lower, M.
Renard, B.Y.
Graaf, J. de
Wagner, M.
Paret, C.
Kneip, C.
Tureci, O.
Diken, M.
Britten, C.
Kreiter, S.
Koslowski, M.
Castle, J.C.
Sahin, U.

January 2012

Contains fulltext : 110677.pdf (publisher's version ) (Open Access)Next generation...

Frequency and signature of somatic variants in 1461 human brain exomes

Wei, W
Keogh, MJ
Aryaman, J
Golder, Z
Kullar, PJ
Wilson, I
Talbot, K
Turner, MR
McKenzie, C-A
Troakes, C
Attems, J
Smith, C
Sarraj, SA
Morris, CM
Ansorge, O
Jones, NS
Ironside, JW
Chinnery, PF

January 2018

Purpose To systematically study somatic variants arising during development in the human brain acros...

Mutational signatures: the patterns of somatic mutations hidden in cancer genomes

Alexandrov, Ludmil B
Stratton, Michael R

February 2014

All cancers originate from a single cell that starts to behave abnormally due to the acquired somati...

Calling patterns of the somatic variant callers.

Abstract

Extracted data

Calling patterns of the somatic variant callers.

Abstract

Extracted data

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