Additional file 2: Table S2. of Metabolome response to temperature-induced virulence gene expression in two genotypes of pathogenic Vibrio parahaemolyticus

Additional file 2: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Figure S1. Multivariate statistical analysis for the metabolites between theÂ control and experiment...

Additional file 1: of MALDI-TOF mass spectrometry-based serotyping of V. parahaemolyticus isolated from the Zhejiang province of China

Ping Li (31981)
Wenwen Xin (317882)
Susu Xia (5961707)
Yun Luo (355365)
Zhongwen Chen (770401)
Dazhi Jin (5961710)
Shan Gao (46743)
Hao Yang (328526)
Bin Ji (334060)
Henghui Wang (5961713)
Yong Yan (124844)
Lin Kang (46742)
Jinglin Wang (317883)

November 2018

Figure S1. MALDI-TOF MS-based dendrogram of 146 strains belonging to 23 serotypes. The strains were ...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 1: Table S1. of Metabolome response to temperature-induced virulence gene expression in two genotypes of pathogenic Vibrio parahaemolyticus

Bo Feng (141991)
Zhuoran Guo (3527216)
Weijia Zhang (79845)
Yingjie Pan (590513)
Yong Zhao (84950)

April 2016

Relative concentration of metabolites identified in Vibrio parahaemolyticus ATCC33846. (XLSX 123 kb)

Additional file 2: of Changes in global gene expression of Vibrio parahaemolyticus induced by cold- and heat-stress

Sara Urmersbach (3446822)
Tommi Aho (21558)
Thomas Alter (610613)
Syeda Hassan (3446819)
Reija Autio (433265)
Stephan Huehn (3446816)

October 2015

Differentially expressed genes with log 2 fold change >1.5 and adjusted p -value <0.05 in each condi...

Additional file 1: of Changes in global gene expression of Vibrio parahaemolyticus induced by cold- and heat-stress

Sara Urmersbach (3446822)
Tommi Aho (21558)
Thomas Alter (610613)
Syeda Hassan (3446819)
Reija Autio (433265)
Stephan Huehn (3446816)

October 2015

DAVID categories. Additional file includes DAVID data for all temperatures. (XLSX 25Â kb

Additional file 1: of Gene expression of Vibrio parahaemolyticus growing in laboratory isolation conditions compared to those common in its natural ocean environment

Katherine García (186597)
Cristian Yáñez (4038059)
Nicolás Plaza (4038062)
Francisca Peña (4038056)
Pedro Sepúlveda (4038065)
Diliana Pérez-Reytor (4038053)
Romilio Espejo (180435)

May 2017

RPKM and differential expression values for the V. parahaemolyticus genome. Additional file includes...

Additional file 2: of Expanding dynamics of the virulence-related gene variations in the toxigenic Vibrio cholerae serogroup O1

Zhenpeng Li (553533)
Bo Pang (164741)
Duochun Wang (216622)
Jie Li (15030)
Jialiang Xu (1424821)
Yujie Fang (5206391)
Xin Lu (24821)
Biao Kan (107255)

May 2019

Table S2. The detailed information of 176 virulence-related homologs in which each homolog was prese...

Table_1_Cold Tolerance Regulated by the Pyruvate Metabolism in Vibrio parahaemolyticus.xlsx

Tengfei Xie (3468617)
Rui Pang (1601419)
Qingping Wu (789611)
Juemei Zhang (6305693)
Tao Lei (404218)
Yanping Li (90163)
Juan Wang (115708)
Yu Ding (54012)
Moutong Chen (789613)
Jianlin Bai (435049)

February 2019

Vibrio parahaemolyticus is a common foodborne pathogen found in seafood, and represents a major thre...

Additional file 2: of Metatranscriptomics reveals metabolic adaptation and induction of virulence factors by Haemophilus parasuis during lung infection

Bernardo Bello-OrtĂ (3562010)
Kate Howell (770365)
Alexander Tucker (3562013)
Duncan Maskell (85283)
Virginia Aragon (3458810)

September 2015

Differential expression of Nagasaki genes. Differential expression of genes ex vivo versus plate cul...

Additional file 2: Figure S2. of Genomic and transcriptomic analyses reveal distinct biological functions for cold shock proteins (VpaCspA and VpaCspD) in Vibrio parahaemolyticus CHN25 during low-temperature survival

Chunhua Zhu (2275507)
Boyi Sun (4069651)
Taigang Liu (4069645)
Huajun Zheng (38118)
Wenyi Gu (38121)
Wei He (131453)
Fengjiao Sun (4069648)
Yaping Wang (289641)
Meicheng Yang (4069642)
Weicheng Bei (220866)
Xu Peng (365714)
Qunxin She (825626)
Lu Xie (55571)
Lanming Chen (4069654)

June 2017

Circular maps of the V. parahaemolyticus CHN25 plasmids. (a)-(c): each circle in the grey lines, exc...

Additional file 1 of Fever-like temperature impacts on Staphylococcus aureus and Pseudomonas aeruginosa interaction, physiology, and virulence both in vitro and in vivo

E. C. Solar Venero (17906986)
M. B. Galeano (17906989)
A. Luqman (17906992)
M. M. Ricardi (17906995)
F. Serral (17906998)
D. Fernandez Do Porto (17907001)
S. A. Robaldi (17907004)
B. A. Z. Ashari (17907007)
T. H. Munif (17907010)
D. E. Egoburo (17907013)
S. Nemirovsky (17907016)
J. Escalante (17907019)
B. Nishimura (17907022)
M. S. Ramirez (17907025)
F. Götz (17907028)
P. M. Tribelli (17907031)

February 2024

Additional file 1: Fig. S1. Pigment production and CFU counting under longer incubation periods. Fig...

Table_2_Integration of Transcriptomic and Proteomic Approaches Reveals the Temperature-Dependent Virulence of Pseudomonas plecoglossicida.DOC

Lixing Huang (117377)
Wenjia Liu (118146)
Qingling Jiang (4594639)
Yanfei Zuo (5431202)
Yongquan Su (497279)
Lingmin Zhao (5431205)
Yingxue Qin (5431208)
Qingpi Yan (5431199)

June 2018

<p>Pseudomonas plecoglossicida is a facultative pathogen that is associated with diseases of multipl...

Table_1_Comparative Genomic Analysis Reveals the Potential Risk of Vibrio parahaemolyticus Isolated From Ready-To-Eat Foods in China.XLSX

Rui Pang (1601419)
Tengfei Xie (3468617)
Qingping Wu (789611)
Yanping Li (90163)
Tao Lei (404218)
Jumei Zhang (789612)
Yu Ding (54012)
Juan Wang (115708)
Liang Xue (174224)
Moutong Chen (789613)
Xianhu Wei (5776016)
Youxiong Zhang (5776019)
Shuhong Zhang (544528)
Xiaojuan Yang (794374)

February 2019

Vibrio parahaemolyticus is a major foodborne pathogen associated with the consumption of aquatic pro...

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 2: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Figure S1. Multivariate statistical analysis for the metabolites between theÂ control and experiment...

Additional file 1: of MALDI-TOF mass spectrometry-based serotyping of V. parahaemolyticus isolated from the Zhejiang province of China

Ping Li (31981)
Wenwen Xin (317882)
Susu Xia (5961707)
Yun Luo (355365)
Zhongwen Chen (770401)
Dazhi Jin (5961710)
Shan Gao (46743)
Hao Yang (328526)
Bin Ji (334060)
Henghui Wang (5961713)
Yong Yan (124844)
Lin Kang (46742)
Jinglin Wang (317883)

November 2018

Figure S1. MALDI-TOF MS-based dendrogram of 146 strains belonging to 23 serotypes. The strains were ...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 1: Table S1. of Metabolome response to temperature-induced virulence gene expression in two genotypes of pathogenic Vibrio parahaemolyticus

Bo Feng (141991)
Zhuoran Guo (3527216)
Weijia Zhang (79845)
Yingjie Pan (590513)
Yong Zhao (84950)

April 2016

Relative concentration of metabolites identified in Vibrio parahaemolyticus ATCC33846. (XLSX 123 kb)

Additional file 2: of Changes in global gene expression of Vibrio parahaemolyticus induced by cold- and heat-stress

Sara Urmersbach (3446822)
Tommi Aho (21558)
Thomas Alter (610613)
Syeda Hassan (3446819)
Reija Autio (433265)
Stephan Huehn (3446816)

October 2015

Differentially expressed genes with log 2 fold change >1.5 and adjusted p -value <0.05 in each condi...

Additional file 1: of Changes in global gene expression of Vibrio parahaemolyticus induced by cold- and heat-stress

Sara Urmersbach (3446822)
Tommi Aho (21558)
Thomas Alter (610613)
Syeda Hassan (3446819)
Reija Autio (433265)
Stephan Huehn (3446816)

October 2015

DAVID categories. Additional file includes DAVID data for all temperatures. (XLSX 25Â kb

Additional file 1: of Gene expression of Vibrio parahaemolyticus growing in laboratory isolation conditions compared to those common in its natural ocean environment

Katherine García (186597)
Cristian Yáñez (4038059)
Nicolás Plaza (4038062)
Francisca Peña (4038056)
Pedro Sepúlveda (4038065)
Diliana Pérez-Reytor (4038053)
Romilio Espejo (180435)

May 2017

RPKM and differential expression values for the V. parahaemolyticus genome. Additional file includes...

Additional file 2: of Expanding dynamics of the virulence-related gene variations in the toxigenic Vibrio cholerae serogroup O1

Zhenpeng Li (553533)
Bo Pang (164741)
Duochun Wang (216622)
Jie Li (15030)
Jialiang Xu (1424821)
Yujie Fang (5206391)
Xin Lu (24821)
Biao Kan (107255)

May 2019

Table S2. The detailed information of 176 virulence-related homologs in which each homolog was prese...

Table_1_Cold Tolerance Regulated by the Pyruvate Metabolism in Vibrio parahaemolyticus.xlsx

Tengfei Xie (3468617)
Rui Pang (1601419)
Qingping Wu (789611)
Juemei Zhang (6305693)
Tao Lei (404218)
Yanping Li (90163)
Juan Wang (115708)
Yu Ding (54012)
Moutong Chen (789613)
Jianlin Bai (435049)

February 2019

Vibrio parahaemolyticus is a common foodborne pathogen found in seafood, and represents a major thre...

Additional file 2: of Metatranscriptomics reveals metabolic adaptation and induction of virulence factors by Haemophilus parasuis during lung infection

Bernardo Bello-OrtĂ (3562010)
Kate Howell (770365)
Alexander Tucker (3562013)
Duncan Maskell (85283)
Virginia Aragon (3458810)

September 2015

Differential expression of Nagasaki genes. Differential expression of genes ex vivo versus plate cul...

Additional file 2: Figure S2. of Genomic and transcriptomic analyses reveal distinct biological functions for cold shock proteins (VpaCspA and VpaCspD) in Vibrio parahaemolyticus CHN25 during low-temperature survival

Chunhua Zhu (2275507)
Boyi Sun (4069651)
Taigang Liu (4069645)
Huajun Zheng (38118)
Wenyi Gu (38121)
Wei He (131453)
Fengjiao Sun (4069648)
Yaping Wang (289641)
Meicheng Yang (4069642)
Weicheng Bei (220866)
Xu Peng (365714)
Qunxin She (825626)
Lu Xie (55571)
Lanming Chen (4069654)

June 2017

Circular maps of the V. parahaemolyticus CHN25 plasmids. (a)-(c): each circle in the grey lines, exc...

Additional file 1 of Fever-like temperature impacts on Staphylococcus aureus and Pseudomonas aeruginosa interaction, physiology, and virulence both in vitro and in vivo

E. C. Solar Venero (17906986)
M. B. Galeano (17906989)
A. Luqman (17906992)
M. M. Ricardi (17906995)
F. Serral (17906998)
D. Fernandez Do Porto (17907001)
S. A. Robaldi (17907004)
B. A. Z. Ashari (17907007)
T. H. Munif (17907010)
D. E. Egoburo (17907013)
S. Nemirovsky (17907016)
J. Escalante (17907019)
B. Nishimura (17907022)
M. S. Ramirez (17907025)
F. Götz (17907028)
P. M. Tribelli (17907031)

February 2024

Additional file 1: Fig. S1. Pigment production and CFU counting under longer incubation periods. Fig...

Table_2_Integration of Transcriptomic and Proteomic Approaches Reveals the Temperature-Dependent Virulence of Pseudomonas plecoglossicida.DOC

Lixing Huang (117377)
Wenjia Liu (118146)
Qingling Jiang (4594639)
Yanfei Zuo (5431202)
Yongquan Su (497279)
Lingmin Zhao (5431205)
Yingxue Qin (5431208)
Qingpi Yan (5431199)

June 2018

<p>Pseudomonas plecoglossicida is a facultative pathogen that is associated with diseases of multipl...

Table_1_Comparative Genomic Analysis Reveals the Potential Risk of Vibrio parahaemolyticus Isolated From Ready-To-Eat Foods in China.XLSX

Rui Pang (1601419)
Tengfei Xie (3468617)
Qingping Wu (789611)
Yanping Li (90163)
Tao Lei (404218)
Jumei Zhang (789612)
Yu Ding (54012)
Juan Wang (115708)
Liang Xue (174224)
Moutong Chen (789613)
Xianhu Wei (5776016)
Youxiong Zhang (5776019)
Shuhong Zhang (544528)
Xiaojuan Yang (794374)

February 2019

Vibrio parahaemolyticus is a major foodborne pathogen associated with the consumption of aquatic pro...

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 2: of A metabolomics and proteomics study of the Lactobacillus plantarum in the grass carp fermentation

Tinghong Ming (6100409)
Jiaojiao Han (4501030)
Yanyan Li (345271)
Chenyang Lu (4501027)
Dihong Qiu (6100412)
Ye Li (290115)
Jun Zhou (6477)
Xiurong Su (291191)

December 2018

Figure S1. Multivariate statistical analysis for the metabolites between theÂ control and experiment...

Additional file 1: of MALDI-TOF mass spectrometry-based serotyping of V. parahaemolyticus isolated from the Zhejiang province of China

Ping Li (31981)
Wenwen Xin (317882)
Susu Xia (5961707)
Yun Luo (355365)
Zhongwen Chen (770401)
Dazhi Jin (5961710)
Shan Gao (46743)
Hao Yang (328526)
Bin Ji (334060)
Henghui Wang (5961713)
Yong Yan (124844)
Lin Kang (46742)
Jinglin Wang (317883)

November 2018

Figure S1. MALDI-TOF MS-based dendrogram of 146 strains belonging to 23 serotypes. The strains were ...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 2: Table S2. of Metabolome response to temperature-induced virulence gene expression in two genotypes of pathogenic Vibrio parahaemolyticus

Abstract

Extracted data

Additional file 2: Table S2. of Metabolome response to temperature-induced virulence gene expression in two genotypes of pathogenic Vibrio parahaemolyticus

Abstract

Extracted data

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