Chloephaga rubidiceps and Chloephaga poliocephala genotypes in .vcf format

Main vcf file with allele frequency estimates

Martin Kardos (3285978)
Gordon Luikart (2871419)
Rowan Bunch (3313518)
Sarah Dewey (3313512)
William Edwards (1770799)
Sean McWilliam (9473)
John Stephenson (3313515)
Fred W. Allendorf (108378)
John T. Hogg (3247221)
James Kijas (216935)

November 2016

vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...

patient.controls.genotyped.freebayes.gatk.union.biallelic.vcf

Daniel Beiting (13733266)

September 2022

Variant Calling Format (VCF) file used to produce Fig 3 in the associated manuscriptVariant Calling ...

Genotype file (vcf)

Kingston, Sarah E.
Martino, Pieter
Melendy, Marko
Reed, Floyd A.
Carlon, David B.

December 2017

Variant call format genotypes file for SNP loci (322 mussels from the climate stress group)

Chloephaga picta genotypes in .vcf format

Kopuchian, Cecilia
Campagna, Leonardo
Di Giacomo, Adrián S.
Wilson, Robert E.
Bulgarella, Mariana
Petracci, Pablo
Mazar Barnett, Juan
Matus, Ricardo
Blank, Olivia
McCracken, Kevin G.

April 2016

This is a .vcf file containing genotypes for Chloephaga picta at RAD loci. It was generated using th...

Chloephaga rubidiceps and Chloephaga poliocephala genotypes in genepop format

Cecilia Kopuchian (833907)
Leonardo Campagna (3262872)
Adrián S. Di Giacomo (3277962)
Robert E. Wilson (25863)
Mariana Bulgarella (833909)
Pablo Petracci (3277974)
Juan Mazar Barnett (3277971)
Ricardo Matus (3277965)
Olivia Blank (3277968)
Kevin G. McCracken (25861)

November 2016

This file contains genotypes for Chloephaga rubidiceps and Chloephaga poliocephala at RAD loci in ge...

Chloephaga picta genotypes in genepop format

Kopuchian, Cecilia
Campagna, Leonardo
Di Giacomo, Adrián S.
Wilson, Robert E.
Bulgarella, Mariana
Petracci, Pablo
Mazar Barnett, Juan
Matus, Ricardo
Blank, Olivia
McCracken, Kevin G.

April 2016

This file contains genotypes for Chloephaga picta at RAD loci in genepop format. It was generated us...

Genotype calls for Heliconius, 4 erato and 2 melpomene populations (vcf format)

Supple, Megan A.
Hines, Heather M.
Dasmahapatra, Kanchon K.
Lewis, James J.
Nielsen, Dahlia M.
Lavoie, Christine
Ray, David A.
Salazar, Camilo
McMillan, W. Owen
Counterman, Brian A.

June 2013

Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. F...

Genotype calls for Heliconius erato clade (vcf format)

Megan Ann Supple (3285339)
Riccardo Papa (95307)
Heather M. Hines (187775)
William Owen McMillan (3285336)
Brian A. Counterman (253518)

October 2016

Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. Fil...

STACKS VCF file output

Spyros Theodoridis (3397400)
Theofania Patsiou (3397403)
Christophe Randin (3276747)
Elena Conti (628642)

March 2018

The VCF file containing alll SNPs identified by STACKS. This file was filtered and further used to a...

VCF file for a population of Drosophila melanogaster

Salomon, Matthew

May 2016

This file is the set of single nucleotide polymorphisms and insertion/deletions in a population of D...

VCF file

Zachary E. Underwood (3264375)
Elizabeth G. Mandeville (3264372)
Annika W. Walters (798983)

October 2016

This is a .vcf file produced by calling variant genetic sites using samtools and bcftools. For each ...

cl_cf_co_na_C50_DP6_SP13_merge_144CM.vcf

Pierpaolo Maisano Delser (5912879)
Shannon Corrigan (804160)
Drew Duckett (5912882)
Arnaud Suwalski (5912885)
Michel Veuille (3317193)
Serge Planes (133231)
Gavin J.P. Naylor (5912888)
Stefano Mona (702714)

October 2018

VCF file containing genotype calls for 144 samples (C. melanopterus) and 4 outgroups as described in...

population map for C. rubidiceps and C. poliocephala

Kopuchian, Cecilia
Campagna, Leonardo
Di Giacomo, Adrián S.
Wilson, Robert E.
Bulgarella, Mariana
Petracci, Pablo
Mazar Barnett, Juan
Matus, Ricardo
Blank, Olivia
McCracken, Kevin G.

April 2016

This file contains the individuals for which genotypes are to be exported using the populations modu...

VCF files with filtered SNPs of Galeolaria

Cristóbal Gallegos (14354445)

January 2023

Single Nucleotide Polymorphism data for Galeolaria caespitosa and G. gemineoa in VCF format.</p

Genetic data (filtered vcf file)

Lauren Lucas (3288597)
Chris Nice (5017265)
Zach Gompert (3191738)

March 2018

This text file contains the filtered genetic data (SNP set) in variant call format (vcf). This inclu...

Main vcf file with allele frequency estimates

Martin Kardos (3285978)
Gordon Luikart (2871419)
Rowan Bunch (3313518)
Sarah Dewey (3313512)
William Edwards (1770799)
Sean McWilliam (9473)
John Stephenson (3313515)
Fred W. Allendorf (108378)
John T. Hogg (3247221)
James Kijas (216935)

November 2016

vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...

patient.controls.genotyped.freebayes.gatk.union.biallelic.vcf

Daniel Beiting (13733266)

September 2022

Variant Calling Format (VCF) file used to produce Fig 3 in the associated manuscriptVariant Calling ...

Genotype file (vcf)

Kingston, Sarah E.
Martino, Pieter
Melendy, Marko
Reed, Floyd A.
Carlon, David B.

December 2017

Variant call format genotypes file for SNP loci (322 mussels from the climate stress group)

Chloephaga picta genotypes in .vcf format

Kopuchian, Cecilia
Campagna, Leonardo
Di Giacomo, Adrián S.
Wilson, Robert E.
Bulgarella, Mariana
Petracci, Pablo
Mazar Barnett, Juan
Matus, Ricardo
Blank, Olivia
McCracken, Kevin G.

April 2016

This is a .vcf file containing genotypes for Chloephaga picta at RAD loci. It was generated using th...

Chloephaga rubidiceps and Chloephaga poliocephala genotypes in genepop format

Cecilia Kopuchian (833907)
Leonardo Campagna (3262872)
Adrián S. Di Giacomo (3277962)
Robert E. Wilson (25863)
Mariana Bulgarella (833909)
Pablo Petracci (3277974)
Juan Mazar Barnett (3277971)
Ricardo Matus (3277965)
Olivia Blank (3277968)
Kevin G. McCracken (25861)

November 2016

This file contains genotypes for Chloephaga rubidiceps and Chloephaga poliocephala at RAD loci in ge...

Chloephaga picta genotypes in genepop format

Kopuchian, Cecilia
Campagna, Leonardo
Di Giacomo, Adrián S.
Wilson, Robert E.
Bulgarella, Mariana
Petracci, Pablo
Mazar Barnett, Juan
Matus, Ricardo
Blank, Olivia
McCracken, Kevin G.

April 2016

This file contains genotypes for Chloephaga picta at RAD loci in genepop format. It was generated us...

Genotype calls for Heliconius, 4 erato and 2 melpomene populations (vcf format)

Supple, Megan A.
Hines, Heather M.
Dasmahapatra, Kanchon K.
Lewis, James J.
Nielsen, Dahlia M.
Lavoie, Christine
Ray, David A.
Salazar, Camilo
McMillan, W. Owen
Counterman, Brian A.

June 2013

Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. F...

Genotype calls for Heliconius erato clade (vcf format)

Megan Ann Supple (3285339)
Riccardo Papa (95307)
Heather M. Hines (187775)
William Owen McMillan (3285336)
Brian A. Counterman (253518)

October 2016

Vcf files were generated by aligning to a reference using BWA. Genotypes were called using GATK. Fil...

STACKS VCF file output

Spyros Theodoridis (3397400)
Theofania Patsiou (3397403)
Christophe Randin (3276747)
Elena Conti (628642)

March 2018

The VCF file containing alll SNPs identified by STACKS. This file was filtered and further used to a...

VCF file for a population of Drosophila melanogaster

Salomon, Matthew

May 2016

This file is the set of single nucleotide polymorphisms and insertion/deletions in a population of D...

VCF file

Zachary E. Underwood (3264375)
Elizabeth G. Mandeville (3264372)
Annika W. Walters (798983)

October 2016

This is a .vcf file produced by calling variant genetic sites using samtools and bcftools. For each ...

cl_cf_co_na_C50_DP6_SP13_merge_144CM.vcf

Pierpaolo Maisano Delser (5912879)
Shannon Corrigan (804160)
Drew Duckett (5912882)
Arnaud Suwalski (5912885)
Michel Veuille (3317193)
Serge Planes (133231)
Gavin J.P. Naylor (5912888)
Stefano Mona (702714)

October 2018

VCF file containing genotype calls for 144 samples (C. melanopterus) and 4 outgroups as described in...

population map for C. rubidiceps and C. poliocephala

Kopuchian, Cecilia
Campagna, Leonardo
Di Giacomo, Adrián S.
Wilson, Robert E.
Bulgarella, Mariana
Petracci, Pablo
Mazar Barnett, Juan
Matus, Ricardo
Blank, Olivia
McCracken, Kevin G.

April 2016

This file contains the individuals for which genotypes are to be exported using the populations modu...

VCF files with filtered SNPs of Galeolaria

Cristóbal Gallegos (14354445)

January 2023

Single Nucleotide Polymorphism data for Galeolaria caespitosa and G. gemineoa in VCF format.</p

Genetic data (filtered vcf file)

Lauren Lucas (3288597)
Chris Nice (5017265)
Zach Gompert (3191738)

March 2018

This text file contains the filtered genetic data (SNP set) in variant call format (vcf). This inclu...

Main vcf file with allele frequency estimates

Martin Kardos (3285978)
Gordon Luikart (2871419)
Rowan Bunch (3313518)
Sarah Dewey (3313512)
William Edwards (1770799)
Sean McWilliam (9473)
John Stephenson (3313515)
Fred W. Allendorf (108378)
John T. Hogg (3247221)
James Kijas (216935)

November 2016

vcf including SNPs on all chromosomes, and allele frequency estimates. See README file for more info...

patient.controls.genotyped.freebayes.gatk.union.biallelic.vcf

Daniel Beiting (13733266)

September 2022

Variant Calling Format (VCF) file used to produce Fig 3 in the associated manuscriptVariant Calling ...

Genotype file (vcf)

Kingston, Sarah E.
Martino, Pieter
Melendy, Marko
Reed, Floyd A.
Carlon, David B.

December 2017

Variant call format genotypes file for SNP loci (322 mussels from the climate stress group)

Chloephaga rubidiceps and Chloephaga poliocephala genotypes in .vcf format

Abstract

Extracted data

Chloephaga rubidiceps and Chloephaga poliocephala genotypes in .vcf format

Abstract

Extracted data

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