Additional file 2: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Additional file 6: of Muscle-specific regulation of right ventricular transcriptional responses to chronic hypoxia-induced hypertrophy by the muscle ring finger-1 (MuRF1) ubiquitin ligase in mice

Robert Oakley (5778983)
Matthew Campen (3567395)
Michael Paffett (5778986)
Xin Chen (14149)
Zhongjing Wang (5778989)
Traci Parry (3473267)
Carolyn Hillhouse (5778992)
John Cidlowski (4516567)
Monte Willis (279465)

September 2018

Figure S4. Literature Net analysis of differentially expressed genes in right ventricles after chron...

Additional file 2: of Expression analysis of RNA sequencing data from human neural and glial cell lines depends on technical replication and normalization methods

V. Knight (3507599)
Elba Serrano (3488279)

November 2018

Figure S2 KEGG analysis of metabolic networks. KEGG analysis identified the most enriched metabolic ...

Additional file 1: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
JoĂŁo Casal Novo Ribeiro (3411848)
Anis Larbi (55705)
JoĂŁo de MagalhĂŁes (3411851)

November 2015

Gene co-expression and connectivity. List of humans and mice homologous genes annotated with HGNC sy...

Additional file 3: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

List of K-means cluster analysis of connectivity genes across development during hypoxia. Relative l...

Additional file 5: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

List of K means cluster analysis of connectivity genes across development during hypoxia, after aver...

Additional file 9: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

Data sheets of connectivity genes; analyzed for unadjusted, adjusted for multiple comparisons, and F...

Additional file 4: Figure S1. of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

GO analysis from Fig.Â 3 D and H, with GO terms displayed. Developmental profiles of connectivity ge...

Additional file 7: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

List of all genes analysis (Ensembl gene ID listed). Cluster assignment is shown; and relative count...

Additional file 6: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

Data sheets of qRT-PCR results for atoh1a, arx, col5A3, htr3a, and zic2b. First tab for each gene ha...

Additional file 10: Figure S2. of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

Larger file and font sizes showing gene names for the Protein-Protein Interactions Network. A) STRIN...

Additional file 2: of Variable gene transcription underlies phenotypic convergence of hypoxia tolerance in sculpins

Milica Mandic (3282924)
Marina Ramon (5927120)
Aleeza Gerstein (3702970)
Andrew Gracey (77610)
Jeffrey Richards (3357743)

November 2018

Figure S2. Transcript levels of genes associated with metabolism. Colours and symbols represent diff...

Additional file 1: of Differential responses of Lasiopodomys mandarinus and Lasiopodomys brandtii to chronic hypoxia: a cross-species brain transcriptome analysis

Qianqian Dong (4112740)
Luye Shi (6075635)
Yangwei Li (5096423)
Mengwan Jiang (6075638)
Hong Sun (132232)
Baishi Wang (6075641)
Han Cheng (475615)
Yifeng Zhang (521454)
Tian Shao (2083750)
Yuhua Shi (379491)
Zhenlong Wang (1708150)

December 2018

Table S1. RT-qPCR primers for validation of RNA-Seq data. Table S2. Illumina sequencing data for ana...

Additional file 2: of Decrease of Nibrin expression in chronic hypoxia is associated with hypoxia-induced chemoresistance in some brain tumour cells

Sophie Cowman (6553691)
Yuen Fan (6553694)
Barry Pizer (633605)
Violaine Sée (3263349)

April 2019

Figure S2. Expression profile analysis (A) Network connection of upregulated genes in acute (6 h) hy...

Additional file 3: of Decrease of Nibrin expression in chronic hypoxia is associated with hypoxia-induced chemoresistance in some brain tumour cells

Sophie Cowman (6553691)
Yuen Fan (6553694)
Barry Pizer (633605)
Violaine SĂŠe (6553697)

April 2019

Figure S3. k-means clustering of regulated transcripts. Significantly regulated transcripts from mic...

Additional file 9: of Strong correlation of downregulated genes related to synaptic transmission and mitochondria in post-mortem autism cerebral cortex

Matthew Schwede (388038)
Shailender Nagpal (5331614)
Michael Gandal (5331605)
Neelroop Parikshak (5331608)
Karoly Mirnics (1399432)
Daniel Geschwind (406536)
Eric Morrow (5331611)

June 2018

Table S7. DAVID functional annotation clustering analysis of Voineagu et al. downregulated genes. Us...

Additional file 6: of Muscle-specific regulation of right ventricular transcriptional responses to chronic hypoxia-induced hypertrophy by the muscle ring finger-1 (MuRF1) ubiquitin ligase in mice

Robert Oakley (5778983)
Matthew Campen (3567395)
Michael Paffett (5778986)
Xin Chen (14149)
Zhongjing Wang (5778989)
Traci Parry (3473267)
Carolyn Hillhouse (5778992)
John Cidlowski (4516567)
Monte Willis (279465)

September 2018

Figure S4. Literature Net analysis of differentially expressed genes in right ventricles after chron...

Additional file 2: of Expression analysis of RNA sequencing data from human neural and glial cell lines depends on technical replication and normalization methods

V. Knight (3507599)
Elba Serrano (3488279)

November 2018

Figure S2 KEGG analysis of metabolic networks. KEGG analysis identified the most enriched metabolic ...

Additional file 1: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
JoĂŁo Casal Novo Ribeiro (3411848)
Anis Larbi (55705)
JoĂŁo de MagalhĂŁes (3411851)

November 2015

Gene co-expression and connectivity. List of humans and mice homologous genes annotated with HGNC sy...

Additional file 3: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

List of K-means cluster analysis of connectivity genes across development during hypoxia. Relative l...

Additional file 5: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

List of K means cluster analysis of connectivity genes across development during hypoxia, after aver...

Additional file 9: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

Data sheets of connectivity genes; analyzed for unadjusted, adjusted for multiple comparisons, and F...

Additional file 4: Figure S1. of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

GO analysis from Fig.Â 3 D and H, with GO terms displayed. Developmental profiles of connectivity ge...

Additional file 7: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

List of all genes analysis (Ensembl gene ID listed). Cluster assignment is shown; and relative count...

Additional file 6: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

Data sheets of qRT-PCR results for atoh1a, arx, col5A3, htr3a, and zic2b. First tab for each gene ha...

Additional file 10: Figure S2. of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Brett Milash (139169)
Jingxia Gao (164715)
Tamara Stevenson (3533405)
Jong-Hyun Son (3533408)
Tiffanie Dahl (3533402)
Joshua Bonkowsky (3533411)

May 2016

Larger file and font sizes showing gene names for the Protein-Protein Interactions Network. A) STRIN...

Additional file 2: of Variable gene transcription underlies phenotypic convergence of hypoxia tolerance in sculpins

Milica Mandic (3282924)
Marina Ramon (5927120)
Aleeza Gerstein (3702970)
Andrew Gracey (77610)
Jeffrey Richards (3357743)

November 2018

Figure S2. Transcript levels of genes associated with metabolism. Colours and symbols represent diff...

Additional file 1: of Differential responses of Lasiopodomys mandarinus and Lasiopodomys brandtii to chronic hypoxia: a cross-species brain transcriptome analysis

Qianqian Dong (4112740)
Luye Shi (6075635)
Yangwei Li (5096423)
Mengwan Jiang (6075638)
Hong Sun (132232)
Baishi Wang (6075641)
Han Cheng (475615)
Yifeng Zhang (521454)
Tian Shao (2083750)
Yuhua Shi (379491)
Zhenlong Wang (1708150)

December 2018

Table S1. RT-qPCR primers for validation of RNA-Seq data. Table S2. Illumina sequencing data for ana...

Additional file 2: of Decrease of Nibrin expression in chronic hypoxia is associated with hypoxia-induced chemoresistance in some brain tumour cells

Sophie Cowman (6553691)
Yuen Fan (6553694)
Barry Pizer (633605)
Violaine Sée (3263349)

April 2019

Figure S2. Expression profile analysis (A) Network connection of upregulated genes in acute (6 h) hy...

Additional file 3: of Decrease of Nibrin expression in chronic hypoxia is associated with hypoxia-induced chemoresistance in some brain tumour cells

Sophie Cowman (6553691)
Yuen Fan (6553694)
Barry Pizer (633605)
Violaine SĂŠe (6553697)

April 2019

Figure S3. k-means clustering of regulated transcripts. Significantly regulated transcripts from mic...

Additional file 9: of Strong correlation of downregulated genes related to synaptic transmission and mitochondria in post-mortem autism cerebral cortex

Matthew Schwede (388038)
Shailender Nagpal (5331614)
Michael Gandal (5331605)
Neelroop Parikshak (5331608)
Karoly Mirnics (1399432)
Daniel Geschwind (406536)
Eric Morrow (5331611)

June 2018

Table S7. DAVID functional annotation clustering analysis of Voineagu et al. downregulated genes. Us...

Additional file 6: of Muscle-specific regulation of right ventricular transcriptional responses to chronic hypoxia-induced hypertrophy by the muscle ring finger-1 (MuRF1) ubiquitin ligase in mice

Robert Oakley (5778983)
Matthew Campen (3567395)
Michael Paffett (5778986)
Xin Chen (14149)
Zhongjing Wang (5778989)
Traci Parry (3473267)
Carolyn Hillhouse (5778992)
John Cidlowski (4516567)
Monte Willis (279465)

September 2018

Figure S4. Literature Net analysis of differentially expressed genes in right ventricles after chron...

Additional file 2: of Expression analysis of RNA sequencing data from human neural and glial cell lines depends on technical replication and normalization methods

V. Knight (3507599)
Elba Serrano (3488279)

November 2018

Figure S2 KEGG analysis of metabolic networks. KEGG analysis identified the most enriched metabolic ...

Additional file 1: of A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels

Gianni Monaco (3411857)
Sipko van Dam (3411854)
JoĂŁo Casal Novo Ribeiro (3411848)
Anis Larbi (55705)
JoĂŁo de MagalhĂŁes (3411851)

November 2015

Gene co-expression and connectivity. List of humans and mice homologous genes annotated with HGNC sy...

Additional file 2: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

Abstract

Extracted data

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