Additional file 11: Figure S5. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Additional file 3: Table S2. of Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae

Chang-Jin Park (224648)
Tong Wei (395347)
Rita Sharma (171999)
Pamela Ronald (13546)

June 2017

List of up-regulated genes associated with GO terms, 'cell death' (A) and 'vesicle-mediated transpor...

Additional file 9: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

Weiwen Kong (748538)
Li Ding (16240)
Jia Cheng (524760)
Bin Wang (30851)

September 2018

Figure S2. The upstream sequences and putative pathogen-inducible cis-elements (PICEs) in rice. This...

Additional file 13: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S11. Raw RPKM value for S v C timepoint comparison (A) 24 hpi (B) 48 hpi (C) 96 hpi (XLSX 4311...

Additional file 4: Figure S1. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Seunghwan Kim (113737)
Yong-Joon Cho (490207)
Eun-Sung Song (6964)
Sang Lee (236493)
Jeong-Gu Kim (6963)
Lin-Woo Kang (202793)

May 2016

The number of upregulated (UR) and downregulated (DR) genes for each time (min) point 0, 5, 10, 15, ...

Additional file 7: Table S5. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Seunghwan Kim (113737)
Yong-Joon Cho (490207)
Eun-Sung Song (6964)
Sang Lee (236493)
Jeong-Gu Kim (6963)
Lin-Woo Kang (202793)

May 2016

Fold changes of transcriptional expression levels of hrp genes in Xoo and Xcc from two different in ...

Additional file 13: Table S7. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Seunghwan Kim (113737)
Yong-Joon Cho (490207)
Eun-Sung Song (6964)
Sang Lee (236493)
Jeong-Gu Kim (6963)
Lin-Woo Kang (202793)

May 2016

Fold changes of transcriptional expression levels of gum genes in Xoo and Xcc from two different in ...

Additional file 8: Figure S3. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Seunghwan Kim (113737)
Yong-Joon Cho (490207)
Eun-Sung Song (6964)
Sang Lee (236493)
Jeong-Gu Kim (6963)
Lin-Woo Kang (202793)

May 2016

Time-resolved expression of genes related to iron-uptake. (A) Among tonB genes, Xoo2114 was upregula...

Additional file 3 of A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual transcriptomics

Alexandra Menna (11287124)
Susanne Dora (7849916)
Gloria Sancho-Andrés (11287127)
Anurag Kashyap (11287130)
Mukesh Kumar Meena (11287133)
Kamil Sklodowski (1784659)
Debora Gasperini (754110)
Nuria S. Coll (11287136)
Clara Sánchez-Rodríguez (11287139)

August 2021

Additional file 3: Table S2: Arabidopsis differentially expressed genes (DEGs) in response to Fo5176...

Differential gene expression (DEG) of Xanthomonas oryzae pv. oryzicola in culture and during plant infection.

Zhou-Xiang Liao (6597944)
Zhe Ni (6597947)
Xin-Li Wei (6552590)
Long Chen (315739)
Jian-Yuan Li (1643446)
Yan-Hua Yu (6597950)
Wei Jiang (14986)
Bo-Le Jiang (41393)
Yong-Qiang He (41391)
Sheng Huang (573383)

April 2019

(A) A Venn diagram showing DEGs between GX01 grown in planta and in media. The data represent the nu...

Additional file 6: of Comparative analysis of the root transcriptomes of cultivated and wild rice varieties in response to Magnaporthe oryzae infection revealed both common and species-specific pathogen responses

Lei Tian (369281)
Shaohua Shi (553560)
Fahad Nasir (5126789)
Chunling Chang (4593529)
Weiqiang Li (1646440)
Lam-Son Tran (5126786)
Chunjie Tian (607531)

April 2018

Figure S4. MapMan analysis of the genes and pathways responsive to the pathogenic invasion using the...

Additional file 4: Figure S1. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Shirin Seifbarghi (3877354)
M. Borhan (3484328)
Yangdou Wei (168452)
Cathy Coutu (455473)
Stephen Robinson (425911)
Dwayne Hegedus (455471)

March 2017

Clustering of differentially expressed genes based on expression patterns relative to time of inocul...

Additional file 12: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S12. Average expression analysis of all S line timepoints. âAve. Exp.â is calculated as th...

Additional file 11: of Silicon protects soybean plants against Phytophthora sojae by interfering with effector-receptor expression

Aliyeh Rasoolizadeh (5319890)
Caroline Labbé (5319893)
Humira Sonah (216867)
Rupesh Deshmukh (700425)
François Belzile (276331)
James Menzies (3751243)
Richard Bélanger (789004)

May 2018

Figure S4. Expression profile of secondary metabolism-related genes. Gene expression shows a higher ...

Additional file 6: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

Weiwen Kong (748538)
Li Ding (16240)
Jia Cheng (524760)
Bin Wang (30851)

September 2018

Table S5. Differentially expressed transcripts driven by PIPs with the PICEs identified from the ric...

Additional file 15: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S14. Timepoint comparison of R and S lines. LogFC>1 indicates higher expression in the R line ...

Additional file 3: Table S2. of Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae

Chang-Jin Park (224648)
Tong Wei (395347)
Rita Sharma (171999)
Pamela Ronald (13546)

June 2017

List of up-regulated genes associated with GO terms, 'cell death' (A) and 'vesicle-mediated transpor...

Additional file 9: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

Weiwen Kong (748538)
Li Ding (16240)
Jia Cheng (524760)
Bin Wang (30851)

September 2018

Figure S2. The upstream sequences and putative pathogen-inducible cis-elements (PICEs) in rice. This...

Additional file 13: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S11. Raw RPKM value for S v C timepoint comparison (A) 24 hpi (B) 48 hpi (C) 96 hpi (XLSX 4311...

Additional file 4: Figure S1. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Seunghwan Kim (113737)
Yong-Joon Cho (490207)
Eun-Sung Song (6964)
Sang Lee (236493)
Jeong-Gu Kim (6963)
Lin-Woo Kang (202793)

May 2016

The number of upregulated (UR) and downregulated (DR) genes for each time (min) point 0, 5, 10, 15, ...

Additional file 7: Table S5. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Seunghwan Kim (113737)
Yong-Joon Cho (490207)
Eun-Sung Song (6964)
Sang Lee (236493)
Jeong-Gu Kim (6963)
Lin-Woo Kang (202793)

May 2016

Fold changes of transcriptional expression levels of hrp genes in Xoo and Xcc from two different in ...

Additional file 13: Table S7. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Seunghwan Kim (113737)
Yong-Joon Cho (490207)
Eun-Sung Song (6964)
Sang Lee (236493)
Jeong-Gu Kim (6963)
Lin-Woo Kang (202793)

May 2016

Fold changes of transcriptional expression levels of gum genes in Xoo and Xcc from two different in ...

Additional file 8: Figure S3. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Seunghwan Kim (113737)
Yong-Joon Cho (490207)
Eun-Sung Song (6964)
Sang Lee (236493)
Jeong-Gu Kim (6963)
Lin-Woo Kang (202793)

May 2016

Time-resolved expression of genes related to iron-uptake. (A) Among tonB genes, Xoo2114 was upregula...

Additional file 3 of A primary cell wall cellulose-dependent defense mechanism against vascular pathogens revealed by time-resolved dual transcriptomics

Alexandra Menna (11287124)
Susanne Dora (7849916)
Gloria Sancho-Andrés (11287127)
Anurag Kashyap (11287130)
Mukesh Kumar Meena (11287133)
Kamil Sklodowski (1784659)
Debora Gasperini (754110)
Nuria S. Coll (11287136)
Clara Sánchez-Rodríguez (11287139)

August 2021

Additional file 3: Table S2: Arabidopsis differentially expressed genes (DEGs) in response to Fo5176...

Differential gene expression (DEG) of Xanthomonas oryzae pv. oryzicola in culture and during plant infection.

Zhou-Xiang Liao (6597944)
Zhe Ni (6597947)
Xin-Li Wei (6552590)
Long Chen (315739)
Jian-Yuan Li (1643446)
Yan-Hua Yu (6597950)
Wei Jiang (14986)
Bo-Le Jiang (41393)
Yong-Qiang He (41391)
Sheng Huang (573383)

April 2019

(A) A Venn diagram showing DEGs between GX01 grown in planta and in media. The data represent the nu...

Additional file 6: of Comparative analysis of the root transcriptomes of cultivated and wild rice varieties in response to Magnaporthe oryzae infection revealed both common and species-specific pathogen responses

Lei Tian (369281)
Shaohua Shi (553560)
Fahad Nasir (5126789)
Chunling Chang (4593529)
Weiqiang Li (1646440)
Lam-Son Tran (5126786)
Chunjie Tian (607531)

April 2018

Figure S4. MapMan analysis of the genes and pathways responsive to the pathogenic invasion using the...

Additional file 4: Figure S1. of Changes in the Sclerotinia sclerotiorum transcriptome during infection of Brassica napus

Shirin Seifbarghi (3877354)
M. Borhan (3484328)
Yangdou Wei (168452)
Cathy Coutu (455473)
Stephen Robinson (425911)
Dwayne Hegedus (455471)

March 2017

Clustering of differentially expressed genes based on expression patterns relative to time of inocul...

Additional file 12: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S12. Average expression analysis of all S line timepoints. âAve. Exp.â is calculated as th...

Additional file 11: of Silicon protects soybean plants against Phytophthora sojae by interfering with effector-receptor expression

Aliyeh Rasoolizadeh (5319890)
Caroline Labbé (5319893)
Humira Sonah (216867)
Rupesh Deshmukh (700425)
François Belzile (276331)
James Menzies (3751243)
Richard Bélanger (789004)

May 2018

Figure S4. Expression profile of secondary metabolism-related genes. Gene expression shows a higher ...

Additional file 6: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

Weiwen Kong (748538)
Li Ding (16240)
Jia Cheng (524760)
Bin Wang (30851)

September 2018

Table S5. Differentially expressed transcripts driven by PIPs with the PICEs identified from the ric...

Additional file 15: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S14. Timepoint comparison of R and S lines. LogFC>1 indicates higher expression in the R line ...

Additional file 3: Table S2. of Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae

Chang-Jin Park (224648)
Tong Wei (395347)
Rita Sharma (171999)
Pamela Ronald (13546)

June 2017

List of up-regulated genes associated with GO terms, 'cell death' (A) and 'vesicle-mediated transpor...

Additional file 9: of Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa

Weiwen Kong (748538)
Li Ding (16240)
Jia Cheng (524760)
Bin Wang (30851)

September 2018

Figure S2. The upstream sequences and putative pathogen-inducible cis-elements (PICEs) in rice. This...

Additional file 13: of Gene regulation of Sclerotinia sclerotiorum during infection of Glycine max: on the road to pathogenesis

Nathaniel Westrick (6405161)
Ashish Ranjan (197885)
Sachin Jain (410120)
Craig Grau (6405164)
Damon Smith (647938)
Mehdi Kabbage (215361)

February 2019

Table S11. Raw RPKM value for S v C timepoint comparison (A) 24 hpi (B) 48 hpi (C) 96 hpi (XLSX 4311...

Additional file 11: Figure S5. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Abstract

Extracted data

Additional file 11: Figure S5. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

Abstract

Extracted data

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