Regional LD plot for rs4733649 at 8q24.21.
- Inês Sousa (771602)
- Patrícia Abrantes (96056)
- Vânia Francisco (771603)
- Gilberto Teixeira (2802379)
- Marta Monteiro (2802382)
- João Neves (2802364)
- Ana Norte (2802373)
- Carlos Robalo Cordeiro (2802370)
- João Moura e Sá (2802361)
- Ernestina Reis (2802355)
- Patrícia Santos (2802367)
- Manuela Oliveira (844688)
- Susana Sousa (181705)
- Marta Fradinho (2802376)
- Filipa Malheiro (2802385)
- Luís Negrão (2802388)
- Salvato Feijó (2802358)
- Sofia A. Oliveira (201863)
Publication date
May 2016
DOIAbstract
<p>The pairwise LD (r<sup>2</sup>) between the SNP of interest and surrounding variants and the estimated recombination rate are plotted as a function of genomic position. This plot was constructed by SNAP (SNP Annotation and Proxy Search, <a href="http://www.broadinstitute.org/mpg/snap/ldplot.php" target="_blank">http://www.broadinstitute.org/mpg/snap/ldplot.php</a>) using the CEU population panel in the 1000 Genome Project (1000GP) Pilot 1 data and a 500 kilobases (kb) distance limit on each side. The horizontal dashed line is at the 0.8 cut-off for r<sup>2</sup>, and the vertical dashed lines indicate the genomic region encompassing SNPs in strong LD (r<sup>2</sup>≥0.8) with the variant of interest.</p
Add to ORKG