Additional file 1: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

The genomic architecture of the passerine MHC region : high repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena
Mellinger, Samantha
Sigeman, Hanna
Kutschera, Verena E.
Proux-Wéra, Estelle
Lundberg, Max
Weissensteiner, Matthias
Churcher, Allison
Bunikis, Ignas
Hansson, Bengt
Wolf, Jochen B. W.
Strandh, Maria

January 2022

The major histocompatibility complex (MHC) is of central importance to the immune system, and an opt...

The genomic architecture of the passerine MHC region: high repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena

April 2022

The Major Histocompatibility Complex (MHC) is of central importance to the immune system, and an opt...

The genomic architecture of the passerine MHC region : High repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena
Mellinger, Samantha
Sigeman, Hanna
Kutschera, Verena E.
Proux-Wera, Estelle
Lundberg, Max
Weissensteiner, Matthias
Churcher, Allison
Bunikis, Ignas
Hansson, Bengt
Wolf, Jochen B. W.
Strandh, Maria

January 2022

The major histocompatibility complex (MHC) is of central importance to the immune system, and an opt...

Additional file 4: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

Shandiya Balasubramaniam (3456098)
Rebecca Bray (3456101)
Raoul Mulder (3456095)
Paul Sunnucks (182576)
Alexandra Pavlova (182554)
Jane Melville (606274)

May 2016

Amino acid alignment of 159 nucleotide sites from MHC class II Î˛ exon 2. Amino acid residues distin...

MHCIIB exon 2 sequence data (Corvida) supporting the following publication: New data from basal Australian songbird lineages show that complex structure of MHC class II β genes has early evolutionary origins within passerines

SHANDIYA BALASUBRAMANIAM (1079672)

May 2016

MHCIIB exon 2 sequence data from seven passerine species, obtained through 454 and Sanger sequencing...

New data from basal Australian songbird lineages show that complex structure of MHC class II beta genes has early evolutionary origins within passerines

Balasubramaniam, S
Bray, RD
Mulder, RA
Sunnucks, P
Pavlova, A
Melville, J

May 2016

BACKGROUND: The major histocompatibility complex (MHC) plays a crucial role in the adaptive immune s...

Additional file 2: Figure S1. of Multi-locus sequence data illuminate demographic drivers of Pleistocene speciation in semi-arid southern Australian birds (Cinclosoma spp.)

Gaynor Dolman (376194)
Leo Joseph (114181)

October 2016

Identification of genetic discontinuities using GENELAND: analyses of allelic data from 11 autosomal...

Additional file 2: of High major histocompatibility complex class I polymorphism despite bottlenecks in wild and domesticated populations of the zebra finch (Taeniopygia guttata)

Daniel Newhouse (3518729)
Christopher Balakrishnan (3282786)

December 2015

Amino acid alignment of unique MHC class I sequences from each population. For each unique allele, t...

Spectrum of MHC Class II Variability in Darwin’s Finches and Their Close Relatives

September 2016

The study describes.400 major histocompatibility complex (MHC) class II B exon 2 and 114 intron 2 se...

Phylogenetic Analysis fails to sort MHC Class II B Exon 2 Alleles by Locus in the Great Frigatebird (Fregata minor)

Agyare, Yaa Asantewaa

May 2015

The major histocompatibility complex (MHC) is a highly polymorphic genetic region, encoding both imm...

Additional file 3: of High major histocompatibility complex class I polymorphism despite bottlenecks in wild and domesticated populations of the zebra finch (Taeniopygia guttata)

Daniel Newhouse (3518729)
Christopher Balakrishnan (3282786)

December 2015

Island and mainland haplotype diversity (HD) plotted next to each other for all reported loci. Anony...

Data from: Major histocompatibility complex class I evolution in songbirds: universal primers, rapid evolution and base compositional shifts in exon 3

Alcaide, Miguel
Liu, Mark
Edwards, Scott V.

June 2013

Genes of the Major Histocompatibility Complex (MHC) have become an important marker for the investig...

Additional file 1: of High major histocompatibility complex class I polymorphism despite bottlenecks in wild and domesticated populations of the zebra finch (Taeniopygia guttata)

Daniel Newhouse (3518729)
Christopher Balakrishnan (3282786)

December 2015

Sample name, origin and locus genotyped for each sample used in this study. (XLS 33 kb

Data from: The evolution of highly variable immunity genes across a passerine bird radiation.

O'Connor, Emily
Strandh, Maria
Hasselquist, Dennis
Nilsson, Jan-Åke
Westerdahl, Helena

To survive, individuals must be able to recognize and eliminate pathogens. The genes of the major hi...

Additional file 1: Figure S1. of Extreme MHC class I diversity in the sedge warbler (Acrocephalus schoenobaenus); selection patterns and allelic divergence suggest that different genes have different functions

Aleksandra Biedrzycka (4227859)
Emily O’Connor (4227856)
Alvaro Sebastian (815856)
Magdalena Migalska (4227874)
Jacek Radwan (460705)
Tadeusz Zając (4227865)
Wojciech Bielański (4227868)
Wojciech Solarz (4227871)
Adam Ćmiel (4227862)
Helena Westerdahl (214373)

July 2017

Schematic overview of the primer design approach. PaDo primers, marked with red arrows, used for amp...

The genomic architecture of the passerine MHC region : high repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena
Mellinger, Samantha
Sigeman, Hanna
Kutschera, Verena E.
Proux-Wéra, Estelle
Lundberg, Max
Weissensteiner, Matthias
Churcher, Allison
Bunikis, Ignas
Hansson, Bengt
Wolf, Jochen B. W.
Strandh, Maria

January 2022

The major histocompatibility complex (MHC) is of central importance to the immune system, and an opt...

The genomic architecture of the passerine MHC region: high repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena

April 2022

The Major Histocompatibility Complex (MHC) is of central importance to the immune system, and an opt...

The genomic architecture of the passerine MHC region : High repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena
Mellinger, Samantha
Sigeman, Hanna
Kutschera, Verena E.
Proux-Wera, Estelle
Lundberg, Max
Weissensteiner, Matthias
Churcher, Allison
Bunikis, Ignas
Hansson, Bengt
Wolf, Jochen B. W.
Strandh, Maria

January 2022

The major histocompatibility complex (MHC) is of central importance to the immune system, and an opt...

Additional file 4: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

Shandiya Balasubramaniam (3456098)
Rebecca Bray (3456101)
Raoul Mulder (3456095)
Paul Sunnucks (182576)
Alexandra Pavlova (182554)
Jane Melville (606274)

May 2016

Amino acid alignment of 159 nucleotide sites from MHC class II Î˛ exon 2. Amino acid residues distin...

MHCIIB exon 2 sequence data (Corvida) supporting the following publication: New data from basal Australian songbird lineages show that complex structure of MHC class II β genes has early evolutionary origins within passerines

SHANDIYA BALASUBRAMANIAM (1079672)

May 2016

MHCIIB exon 2 sequence data from seven passerine species, obtained through 454 and Sanger sequencing...

New data from basal Australian songbird lineages show that complex structure of MHC class II beta genes has early evolutionary origins within passerines

Balasubramaniam, S
Bray, RD
Mulder, RA
Sunnucks, P
Pavlova, A
Melville, J

May 2016

BACKGROUND: The major histocompatibility complex (MHC) plays a crucial role in the adaptive immune s...

Additional file 2: Figure S1. of Multi-locus sequence data illuminate demographic drivers of Pleistocene speciation in semi-arid southern Australian birds (Cinclosoma spp.)

Gaynor Dolman (376194)
Leo Joseph (114181)

October 2016

Identification of genetic discontinuities using GENELAND: analyses of allelic data from 11 autosomal...

Additional file 2: of High major histocompatibility complex class I polymorphism despite bottlenecks in wild and domesticated populations of the zebra finch (Taeniopygia guttata)

Daniel Newhouse (3518729)
Christopher Balakrishnan (3282786)

December 2015

Amino acid alignment of unique MHC class I sequences from each population. For each unique allele, t...

Spectrum of MHC Class II Variability in Darwin’s Finches and Their Close Relatives

September 2016

The study describes.400 major histocompatibility complex (MHC) class II B exon 2 and 114 intron 2 se...

Phylogenetic Analysis fails to sort MHC Class II B Exon 2 Alleles by Locus in the Great Frigatebird (Fregata minor)

Agyare, Yaa Asantewaa

May 2015

The major histocompatibility complex (MHC) is a highly polymorphic genetic region, encoding both imm...

Additional file 3: of High major histocompatibility complex class I polymorphism despite bottlenecks in wild and domesticated populations of the zebra finch (Taeniopygia guttata)

Daniel Newhouse (3518729)
Christopher Balakrishnan (3282786)

December 2015

Island and mainland haplotype diversity (HD) plotted next to each other for all reported loci. Anony...

Data from: Major histocompatibility complex class I evolution in songbirds: universal primers, rapid evolution and base compositional shifts in exon 3

Alcaide, Miguel
Liu, Mark
Edwards, Scott V.

June 2013

Genes of the Major Histocompatibility Complex (MHC) have become an important marker for the investig...

Additional file 1: of High major histocompatibility complex class I polymorphism despite bottlenecks in wild and domesticated populations of the zebra finch (Taeniopygia guttata)

Daniel Newhouse (3518729)
Christopher Balakrishnan (3282786)

December 2015

Sample name, origin and locus genotyped for each sample used in this study. (XLS 33 kb

Data from: The evolution of highly variable immunity genes across a passerine bird radiation.

O'Connor, Emily
Strandh, Maria
Hasselquist, Dennis
Nilsson, Jan-Åke
Westerdahl, Helena

To survive, individuals must be able to recognize and eliminate pathogens. The genes of the major hi...

Additional file 1: Figure S1. of Extreme MHC class I diversity in the sedge warbler (Acrocephalus schoenobaenus); selection patterns and allelic divergence suggest that different genes have different functions

Aleksandra Biedrzycka (4227859)
Emily O’Connor (4227856)
Alvaro Sebastian (815856)
Magdalena Migalska (4227874)
Jacek Radwan (460705)
Tadeusz Zając (4227865)
Wojciech Bielański (4227868)
Wojciech Solarz (4227871)
Adam Ćmiel (4227862)
Helena Westerdahl (214373)

July 2017

Schematic overview of the primer design approach. PaDo primers, marked with red arrows, used for amp...

The genomic architecture of the passerine MHC region : high repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena
Mellinger, Samantha
Sigeman, Hanna
Kutschera, Verena E.
Proux-Wéra, Estelle
Lundberg, Max
Weissensteiner, Matthias
Churcher, Allison
Bunikis, Ignas
Hansson, Bengt
Wolf, Jochen B. W.
Strandh, Maria

January 2022

The major histocompatibility complex (MHC) is of central importance to the immune system, and an opt...

The genomic architecture of the passerine MHC region: high repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena

April 2022

The Major Histocompatibility Complex (MHC) is of central importance to the immune system, and an opt...

The genomic architecture of the passerine MHC region : High repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes

Westerdahl, Helena
Mellinger, Samantha
Sigeman, Hanna
Kutschera, Verena E.
Proux-Wera, Estelle
Lundberg, Max
Weissensteiner, Matthias
Churcher, Allison
Bunikis, Ignas
Hansson, Bengt
Wolf, Jochen B. W.
Strandh, Maria

January 2022

The major histocompatibility complex (MHC) is of central importance to the immune system, and an opt...

Additional file 1: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

Abstract

Extracted data

Additional file 1: of New data from basal Australian songbird lineages show that complex structure of MHC class II Î˛ genes has early evolutionary origins within passerines

Abstract

Extracted data

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