The alignments for 500 single copy, orthologous, nuclear genes across 21 representatives of the eupulmonates. Orthology was assessed through manual curation and gene tree assessment. Each alignment contains a mask, 'x' denotes regions that were masked out (i.e. remove from further analyses). The alignments contain dummy sequences for missing taxa
This folder contains all the original alignments for each one of the 26 genes prior to exclusion of ...
351 single-gene alignments used in phylogenomic analyses, aligned with MAFFT L-INS-I, untrimmed. Thi...
Alignments for 253 loci targeted by capture sequencing. Each file represents one locus, and can cons...
The alignments for 500 single copy, orthologous, nuclear genes across 21 representatives of the eupu...
The alignments representing a subset of the output of Agalma, run on 21 eupulmonate transcriptomes. ...
Trimmed alignments for each of 1,161 orthologous groups recovered from OrhtologID analyses of gene m...
All 1554 single gene alignments with all taxa. Data were concatenated and columns with > 50% missin...
Zip Archive containing 4-species alignments for a set of 1038 orthologs. Nucleotide alignments are i...
Trimmed alignments for 255 genes and 38 taxa as used for the phylogenomic analysis (see Figure 2A an...
This file contains the alignments for the 500 manually curated genes seperated out into alignments p...
All 1554 single gene alignments with only eukaryotic taxa. Data were concatenated and columns with ...
MAFFT gene alignments for 89 putatively single copy nuclear genes, with a concatenated file in both ...
ALIGNED_BEST_FIRST_15000_ORTHOLOGS folder: “Best” ortholog amino acid and nucleotide alignments. The...
The original alignments of the 84 orthologous genes in fasta format. Notice that gaps and continuous...
Alignment and phylogenetic tree of the concatenated 1,101 exon DNA alignment from 15 louse taxa. Ge...
This folder contains all the original alignments for each one of the 26 genes prior to exclusion of ...
351 single-gene alignments used in phylogenomic analyses, aligned with MAFFT L-INS-I, untrimmed. Thi...
Alignments for 253 loci targeted by capture sequencing. Each file represents one locus, and can cons...
The alignments for 500 single copy, orthologous, nuclear genes across 21 representatives of the eupu...
The alignments representing a subset of the output of Agalma, run on 21 eupulmonate transcriptomes. ...
Trimmed alignments for each of 1,161 orthologous groups recovered from OrhtologID analyses of gene m...
All 1554 single gene alignments with all taxa. Data were concatenated and columns with > 50% missin...
Zip Archive containing 4-species alignments for a set of 1038 orthologs. Nucleotide alignments are i...
Trimmed alignments for 255 genes and 38 taxa as used for the phylogenomic analysis (see Figure 2A an...
This file contains the alignments for the 500 manually curated genes seperated out into alignments p...
All 1554 single gene alignments with only eukaryotic taxa. Data were concatenated and columns with ...
MAFFT gene alignments for 89 putatively single copy nuclear genes, with a concatenated file in both ...
ALIGNED_BEST_FIRST_15000_ORTHOLOGS folder: “Best” ortholog amino acid and nucleotide alignments. The...
The original alignments of the 84 orthologous genes in fasta format. Notice that gaps and continuous...
Alignment and phylogenetic tree of the concatenated 1,101 exon DNA alignment from 15 louse taxa. Ge...
This folder contains all the original alignments for each one of the 26 genes prior to exclusion of ...
351 single-gene alignments used in phylogenomic analyses, aligned with MAFFT L-INS-I, untrimmed. Thi...
Alignments for 253 loci targeted by capture sequencing. Each file represents one locus, and can cons...