Additional file 1: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

Additional file 3: of Gut microbiome changes in overweight male adults following bowel preparation

Hui-Mei Chen (137029)
Chung-Chu Chen (6167783)
Chien-Chi Chen (20819)
Shen-Chih Wang (6167786)
Chun-Lin Wang (770377)
Chien-Hsun Huang (3839926)
Jong-Shian Liou (6167789)
Ta-Wei Liu (771106)
Hwei-Ling Peng (390336)
Feng-Mao Lin (6133)
Chia-Yuan Liu (350097)
Shun-Long Weng (149130)
Chieh-Jen Cheng (6167792)
Yi-Fang Hung (6167795)
Chii-Cherng Liao (2132848)
Hsien-Da Huang (1748)

January 2019

Figure S1. The differences of microbial diversity between the type 1 and 2 groups. (PDF 331âkb

Additional file 2: Figure S1. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

Camilla Urbaniak (3536546)
Michelle Angelini (3536549)
Gregory Gloor (523264)
Gregor Reid (163342)

January 2016

Five most abundant genera in human milk. Each point on the graph represents a subject, which indicat...

Additional file 7: of Neonatal gut and respiratory microbiota: coordinated development through time and space

Alex Grier (4676719)
Andrew McDavid (393555)
Bokai Wang (5901923)
Xing Qiu (560143)
James Java (5901926)
Sanjukta Bandyopadhyay (4676731)
Hongmei Yang (175776)
Jeanne Holden-Wiltse (440496)
Haeja Kessler (4676707)
Ann Gill (4676734)
Heidie Huyck (4676716)
Ann Falsey (5901929)
David Topham (4847803)
Kristin Scheible (4676704)
Mary Caserta (4676740)
Gloria Pryhuber (4676710)
Steven Gill (392102)

October 2018

Figure S6. Associations between CST membership and post-menstrual age. The posterior probability of ...

Additional file 10: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

Toshitaka Odamaki (630794)
Kumiko Kato (795406)
Hirosuke Sugahara (3455273)
Nanami Hashikura (3455270)
Sachiko Takahashi (796003)
Jin-zhong Xiao (394699)
Fumiaki Abe (2589232)
Ro Osawa (345943)

May 2016

Taxa that are found in more than 50Â % of the subjects in any cluster (shown in Additional file 8) w...

Additional file 4: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

Toshitaka Odamaki (630794)
Kumiko Kato (795406)
Hirosuke Sugahara (3455273)
Nanami Hashikura (3455270)
Sachiko Takahashi (796003)
Jin-zhong Xiao (394699)
Fumiaki Abe (2589232)
Ro Osawa (345943)

May 2016

Definition of bacterial co-abundance groups (CAGs). CAGs were defined by a heat plot showing Kendall...

Additional file 14: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

Toshitaka Odamaki (630794)
Kumiko Kato (795406)
Hirosuke Sugahara (3455273)
Nanami Hashikura (3455270)
Sachiko Takahashi (796003)
Jin-zhong Xiao (394699)
Fumiaki Abe (2589232)
Ro Osawa (345943)

May 2016

Relative abundance of predicted D-Xylose transporter (KEGG module: M00215). The KEGG module M00215 c...

Additional file 6: of The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

Brandon Brooks (3170784)
Matthew Olm (5431706)
Brian Firek (627650)
Robyn Baker (627651)
David Geller-McGrath (5431709)
Sophia Reimer (5431703)
Karina Soenjoyo (5431712)
Jennifer Yip (5166962)
Dylan Dahan (5228936)
Brian Thomas (3179601)
Michael Morowitz (3608423)
Jillian Banfield (4238992)

June 2018

Fecal sample community composition. Plotted in each panel is the community composition of each infan...

Additional file 4: Figure S2. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

Camilla Urbaniak (3536546)
Michelle Angelini (3536549)
Gregory Gloor (523264)
Gregor Reid (163342)

January 2016

Principal coordinate analysis (PCoA) based on generalized UniFrac distances. Each sample, represente...

Additional file 2: of Dichotomous development of the gut microbiome in preterm infants

Thao Ho (5744411)
Maureen Groer (511727)
Bradley Kane (5744420)
Alyson Yee (5744423)
Benjamin Torres (5744426)
Jack Gilbert (139767)
Akhil Maheshwari (777371)

September 2018

Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...

Additional file 1: Table S1. of Potential and active functions in the gut microbiota of a healthy human cohort

Alessandro Tanca (494538)
Marcello Abbondio (3706183)
Antonio Palomba (494539)
Cristina Fraumene (374294)
Valeria Manghina (3498188)
Francesco Cucca (145742)
Edoardo Fiorillo (518797)
Sergio Uzzau (186221)

July 2017

Gender, age, and BMI of the human subjects selected for the study. Table S2. Metrics of metagenome a...

Additional file 2: of Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study

Martin Mortensen (3465659)
Betina Hebbelstrup Jensen (6114572)
Jeanne Williams (3994580)
Asker Brejnrod (3465656)
Lee O’Brien Andersen (6114575)
Dennis Röser (6114578)
Bente Andreassen (6114581)
Andreas Petersen (433641)
Christen Stensvold (4265683)
Søren Sørensen (222728)
Karen Krogfelt (3419096)

December 2018

Figure S2. Abundance of Core microbiota in each sample, by sample number, grouped by child. Barplot ...

Additional file 2: of Gut microbiome changes in overweight male adults following bowel preparation

Hui-Mei Chen (137029)
Chung-Chu Chen (6167783)
Chien-Chi Chen (20819)
Shen-Chih Wang (6167786)
Chun-Lin Wang (770377)
Chien-Hsun Huang (3839926)
Jong-Shian Liou (6167789)
Ta-Wei Liu (771106)
Hwei-Ling Peng (390336)
Feng-Mao Lin (6133)
Chia-Yuan Liu (350097)
Shun-Long Weng (149130)
Chieh-Jen Cheng (6167792)
Yi-Fang Hung (6167795)
Chii-Cherng Liao (2132848)
Hsien-Da Huang (1748)

January 2019

Table S2. Percentage of fecal samples and mean relative abundances of the 131 genera. (XLSX 27âkb

Additional file 2: of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

Alex Grier (4676719)
Xing Qiu (560143)
Sanjukta Bandyopadhyay (4676731)
Jeanne Holden-Wiltse (440496)
Haeja Kessler (4676707)
Ann Gill (4676734)
Brooke Hamilton (659412)
Heidie Huyck (4676716)
Sara Misra (4676737)
Thomas Mariani (4676728)
Rita Ryan (4676722)
Lori Scholer (4676725)
Kristin Scheible (4676704)
Yi-Horng Lee (4676713)
Mary Caserta (4676740)
Gloria Pryhuber (4676710)
Steven Gill (392102)

December 2017

Figure S1. Composition bar charts by subject and sampling method. Figure S2. Alpha diversity by subj...

Additional file 2: of Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial

Erica Plummer (5961608)
Dieter Bulach (368712)
Gerald Murray (4876939)
Susan Jacobs (5961611)
Sepehr Tabrizi (3638359)
Suzanne Garland (398522)

November 2018

Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...

Additional file 1: of Estrogen-mediated gut microbiome alterations influence sexual dimorphism in metabolic syndrome in mice

Kanakaraju Kaliannan (5280266)
Ruairi Robertson (5280272)
Kiera Murphy (214473)
Catherine Stanton (223943)
Chao Kang (487155)
Bin Wang (30851)
Lei Hao (5961590)
Atul Bhan (5961593)
Jing Kang (251503)

November 2018

Figure S1. Sexual dimorphism in the MS and ME and LGCI. Figure S2. Hierarchical clustering and predi...

Additional file 3: of Gut microbiome changes in overweight male adults following bowel preparation

Hui-Mei Chen (137029)
Chung-Chu Chen (6167783)
Chien-Chi Chen (20819)
Shen-Chih Wang (6167786)
Chun-Lin Wang (770377)
Chien-Hsun Huang (3839926)
Jong-Shian Liou (6167789)
Ta-Wei Liu (771106)
Hwei-Ling Peng (390336)
Feng-Mao Lin (6133)
Chia-Yuan Liu (350097)
Shun-Long Weng (149130)
Chieh-Jen Cheng (6167792)
Yi-Fang Hung (6167795)
Chii-Cherng Liao (2132848)
Hsien-Da Huang (1748)

January 2019

Figure S1. The differences of microbial diversity between the type 1 and 2 groups. (PDF 331âkb

Additional file 2: Figure S1. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

Camilla Urbaniak (3536546)
Michelle Angelini (3536549)
Gregory Gloor (523264)
Gregor Reid (163342)

January 2016

Five most abundant genera in human milk. Each point on the graph represents a subject, which indicat...

Additional file 7: of Neonatal gut and respiratory microbiota: coordinated development through time and space

Alex Grier (4676719)
Andrew McDavid (393555)
Bokai Wang (5901923)
Xing Qiu (560143)
James Java (5901926)
Sanjukta Bandyopadhyay (4676731)
Hongmei Yang (175776)
Jeanne Holden-Wiltse (440496)
Haeja Kessler (4676707)
Ann Gill (4676734)
Heidie Huyck (4676716)
Ann Falsey (5901929)
David Topham (4847803)
Kristin Scheible (4676704)
Mary Caserta (4676740)
Gloria Pryhuber (4676710)
Steven Gill (392102)

October 2018

Figure S6. Associations between CST membership and post-menstrual age. The posterior probability of ...

Additional file 10: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

Toshitaka Odamaki (630794)
Kumiko Kato (795406)
Hirosuke Sugahara (3455273)
Nanami Hashikura (3455270)
Sachiko Takahashi (796003)
Jin-zhong Xiao (394699)
Fumiaki Abe (2589232)
Ro Osawa (345943)

May 2016

Taxa that are found in more than 50Â % of the subjects in any cluster (shown in Additional file 8) w...

Additional file 4: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

Toshitaka Odamaki (630794)
Kumiko Kato (795406)
Hirosuke Sugahara (3455273)
Nanami Hashikura (3455270)
Sachiko Takahashi (796003)
Jin-zhong Xiao (394699)
Fumiaki Abe (2589232)
Ro Osawa (345943)

May 2016

Definition of bacterial co-abundance groups (CAGs). CAGs were defined by a heat plot showing Kendall...

Additional file 14: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

Toshitaka Odamaki (630794)
Kumiko Kato (795406)
Hirosuke Sugahara (3455273)
Nanami Hashikura (3455270)
Sachiko Takahashi (796003)
Jin-zhong Xiao (394699)
Fumiaki Abe (2589232)
Ro Osawa (345943)

May 2016

Relative abundance of predicted D-Xylose transporter (KEGG module: M00215). The KEGG module M00215 c...

Additional file 6: of The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms

Brandon Brooks (3170784)
Matthew Olm (5431706)
Brian Firek (627650)
Robyn Baker (627651)
David Geller-McGrath (5431709)
Sophia Reimer (5431703)
Karina Soenjoyo (5431712)
Jennifer Yip (5166962)
Dylan Dahan (5228936)
Brian Thomas (3179601)
Michael Morowitz (3608423)
Jillian Banfield (4238992)

June 2018

Fecal sample community composition. Plotted in each panel is the community composition of each infan...

Additional file 4: Figure S2. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

Camilla Urbaniak (3536546)
Michelle Angelini (3536549)
Gregory Gloor (523264)
Gregor Reid (163342)

January 2016

Principal coordinate analysis (PCoA) based on generalized UniFrac distances. Each sample, represente...

Additional file 2: of Dichotomous development of the gut microbiome in preterm infants

Thao Ho (5744411)
Maureen Groer (511727)
Bradley Kane (5744420)
Alyson Yee (5744423)
Benjamin Torres (5744426)
Jack Gilbert (139767)
Akhil Maheshwari (777371)

September 2018

Table S1. Temporal changes in alpha-diversity. Table S2. Temporal changes in bacterial phyla. Table ...

Additional file 1: Table S1. of Potential and active functions in the gut microbiota of a healthy human cohort

Alessandro Tanca (494538)
Marcello Abbondio (3706183)
Antonio Palomba (494539)
Cristina Fraumene (374294)
Valeria Manghina (3498188)
Francesco Cucca (145742)
Edoardo Fiorillo (518797)
Sergio Uzzau (186221)

July 2017

Gender, age, and BMI of the human subjects selected for the study. Table S2. Metrics of metagenome a...

Additional file 2: of Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study

Martin Mortensen (3465659)
Betina Hebbelstrup Jensen (6114572)
Jeanne Williams (3994580)
Asker Brejnrod (3465656)
Lee O’Brien Andersen (6114575)
Dennis Röser (6114578)
Bente Andreassen (6114581)
Andreas Petersen (433641)
Christen Stensvold (4265683)
Søren Sørensen (222728)
Karen Krogfelt (3419096)

December 2018

Figure S2. Abundance of Core microbiota in each sample, by sample number, grouped by child. Barplot ...

Additional file 2: of Gut microbiome changes in overweight male adults following bowel preparation

Hui-Mei Chen (137029)
Chung-Chu Chen (6167783)
Chien-Chi Chen (20819)
Shen-Chih Wang (6167786)
Chun-Lin Wang (770377)
Chien-Hsun Huang (3839926)
Jong-Shian Liou (6167789)
Ta-Wei Liu (771106)
Hwei-Ling Peng (390336)
Feng-Mao Lin (6133)
Chia-Yuan Liu (350097)
Shun-Long Weng (149130)
Chieh-Jen Cheng (6167792)
Yi-Fang Hung (6167795)
Chii-Cherng Liao (2132848)
Hsien-Da Huang (1748)

January 2019

Table S2. Percentage of fecal samples and mean relative abundances of the 131 genera. (XLSX 27âkb

Additional file 2: of Impact of prematurity and nutrition on the developing gut microbiome and preterm infant growth

Alex Grier (4676719)
Xing Qiu (560143)
Sanjukta Bandyopadhyay (4676731)
Jeanne Holden-Wiltse (440496)
Haeja Kessler (4676707)
Ann Gill (4676734)
Brooke Hamilton (659412)
Heidie Huyck (4676716)
Sara Misra (4676737)
Thomas Mariani (4676728)
Rita Ryan (4676722)
Lori Scholer (4676725)
Kristin Scheible (4676704)
Yi-Horng Lee (4676713)
Mary Caserta (4676740)
Gloria Pryhuber (4676710)
Steven Gill (392102)

December 2017

Figure S1. Composition bar charts by subject and sampling method. Figure S2. Alpha diversity by subj...

Additional file 2: of Gut microbiota of preterm infants supplemented with probiotics: sub-study of the ProPrems trial

Erica Plummer (5961608)
Dieter Bulach (368712)
Gerald Murray (4876939)
Susan Jacobs (5961611)
Sepehr Tabrizi (3638359)
Suzanne Garland (398522)

November 2018

Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...

Additional file 1: of Estrogen-mediated gut microbiome alterations influence sexual dimorphism in metabolic syndrome in mice

Kanakaraju Kaliannan (5280266)
Ruairi Robertson (5280272)
Kiera Murphy (214473)
Catherine Stanton (223943)
Chao Kang (487155)
Bin Wang (30851)
Lei Hao (5961590)
Atul Bhan (5961593)
Jing Kang (251503)

November 2018

Figure S1. Sexual dimorphism in the MS and ME and LGCI. Figure S2. Hierarchical clustering and predi...

Additional file 3: of Gut microbiome changes in overweight male adults following bowel preparation

Hui-Mei Chen (137029)
Chung-Chu Chen (6167783)
Chien-Chi Chen (20819)
Shen-Chih Wang (6167786)
Chun-Lin Wang (770377)
Chien-Hsun Huang (3839926)
Jong-Shian Liou (6167789)
Ta-Wei Liu (771106)
Hwei-Ling Peng (390336)
Feng-Mao Lin (6133)
Chia-Yuan Liu (350097)
Shun-Long Weng (149130)
Chieh-Jen Cheng (6167792)
Yi-Fang Hung (6167795)
Chii-Cherng Liao (2132848)
Hsien-Da Huang (1748)

January 2019

Figure S1. The differences of microbial diversity between the type 1 and 2 groups. (PDF 331âkb

Additional file 2: Figure S1. of Human milk microbiota profiles in relation to birthing method, gestation and infant gender

Camilla Urbaniak (3536546)
Michelle Angelini (3536549)
Gregory Gloor (523264)
Gregor Reid (163342)

January 2016

Five most abundant genera in human milk. Each point on the graph represents a subject, which indicat...

Additional file 7: of Neonatal gut and respiratory microbiota: coordinated development through time and space

Alex Grier (4676719)
Andrew McDavid (393555)
Bokai Wang (5901923)
Xing Qiu (560143)
James Java (5901926)
Sanjukta Bandyopadhyay (4676731)
Hongmei Yang (175776)
Jeanne Holden-Wiltse (440496)
Haeja Kessler (4676707)
Ann Gill (4676734)
Heidie Huyck (4676716)
Ann Falsey (5901929)
David Topham (4847803)
Kristin Scheible (4676704)
Mary Caserta (4676740)
Gloria Pryhuber (4676710)
Steven Gill (392102)

October 2018

Figure S6. Associations between CST membership and post-menstrual age. The posterior probability of ...

Additional file 1: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

Abstract

Extracted data

Additional file 1: of Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study

Abstract

Extracted data

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