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Average LD as a function of inter-marker distance estimated in the panel of 391 accessions.

Filippo Biscarini (3167496)
Paolo Cozzi (2718154)
Laura Casella (3167475)
Paolo Riccardi (3167502)
Alessandra Vattari (3167478)
Gabriele Orasen (3167481)
Rosaria Perrini (3167484)
Gianni Tacconi (3167493)
Alessandro Tondelli (3167490)
Chiara Biselli (114669)
Luigi Cattivelli (114697)
Jennifer Spindel (692704)
Susan McCouch (14331)
Pamela Abbruscato (114690)
Giampiero Valé (3167499)
Pietro Piffanelli (89039)
Raffaella Greco (3167487)

Publication date

May 2016

DOI

10.1371/journal.pone.0155425.g004

Abstract

<p>Average LD as a function of inter-marker distance estimated in the panel of 391 accessions.</p

Extracted data

Related items

Number of markers and average distance between markers on each linkage group in the mungbean linkage map.

Takehisa Isemura (146717)
Akito Kaga (146724)
Satoshi Tabata (50876)
Prakit Somta (146733)
Peerasak Srinives (146740)
Takehiko Shimizu (146744)
Uken Jo (146748)
Duncan A. Vaughan (146751)
Norihiko Tomooka (146754)

August 2012

<p>Number of markers and average distance between markers on each linkage group in the mungbean link...

Estimates of evolutionary distances between genotypes.

Renata Servan de Almeida (144079)
Saliha Hammoumi (52860)
Patricia Gil (52867)
François-Xavier Briand (237282)
Sophie Molia (473796)
Nicolas Gaidet (52859)
Julien Cappelle (52864)
Véronique Chevalier (3122862)
Gilles Balança (144095)
Abdallah Traoré (473797)
Colette Grillet (473798)
Olivier Fridolin Maminiaina (473799)
Samia Guendouz (473800)
Marthin Dakouo (473801)
Kassim Samaké (473802)
Ould El Mamy Bezeid (473803)
Abbas Diarra (473804)
Hassen Chaka (473805)
Flavie Goutard (473806)
Peter Thompson (165468)
Dominique Martinez (229854)
Véronique Jestin (237321)
Emmanuel Albina (237288)

October 2013

<p>Average intergenotype distance: 0.190.</p><p>Average intragenotype distance: 0.038.</p

Estimation of LD between each pair of loci.

Haojie Yang (488653)
Bo Zhang (6559)
Jialin Zhu (488654)
Dan Liu (108669)
Fanglin Guan (488655)
Xijing He (162686)

November 2013

<p>D′-value are shown below the subtraction sign, and r2-value are shown above the subtraction sign....

LD based on r<sup>2</sup>, averaged for map distance classes and germplasm groups based on population structure analysis in the STRUCTURE.

Carolina Font i Forcada (760886)
Nnadozie Oraguzie (760887)
Sebastian Reyes-Chin-Wo (281014)
Maria Teresa Espiau (760888)
Rafael Socias i Company (760889)
Angel Fernández i Martí (760890)

June 2015

<p>* Number of marker pairs included in each class. The analysis of linkage disequilibrium (LD) reve...

Average distance and LD between adjacent markers in different marker sets.

Hongjun Liu (664738)
Huangkai Zhou (765531)
Yongsheng Wu (756180)
Xiao Li (107004)
Jing Zhao (21160)
Tao Zuo (350509)
Xuan Zhang (56049)
Yongzhong Zhang (765532)
Sisi Liu (420299)
Yaou Shen (176530)
Haijian Lin (176545)
Zhiming Zhang (176541)
Kaijian Huang (765533)
Thomas Lübberstedt (34645)
Guangtang Pan (176561)

July 2015

<p><sup>a</sup> Average physical distance (in Mb) between adjacent markers.</p><p><sup>b</sup> Avera...

Average intra-chromosomal LD decay.

Andrea Bellucci (3841825)
Alessandro Tondelli (3167490)
Jonatan U. Fangel (1635247)
Anna Maria Torp (3841828)
Xin Xu (11989)
William G. T. Willats (167347)
Andrew Flavell (532393)
Luigi Cattivelli (114697)
Søren K. Rasmussen (290396)

March 2017

<p>r<sup>2</sup> values of LD are plotted as a function of the distance between pairs of markers con...

Average LD decay distance(cM) in different chromosomes in the total panel, G1 and G2 groups for locus pairs with <i>r</i><sup>2</sup>>0.1 at P<0.05.

Yunlei Zhao (513275)
Hongmei Wang (190581)
Wei Chen (23863)
Yunhai Li (513276)

January 2014

a<p>The total panel for the 158 cotton lines</p>b<p>The short horizontal line means that only a few ...

Relationship of the difference between observed and simulated LD against genetic distance of 790 SNP markers across all chromosomes.

Nick Fradgley (6411878)
Keith A. Gardner (5480831)
James Cockram (44385)
James Elderfield (6411881)
John M. Hickey (539463)
Phil Howell (6411884)
Robert Jackson (296471)
Ian J. Mackay (5480843)

March 2019

The horizontal dashed line indicates the average linkage between markers on different chromosomes. L...

LD decay as a function of bps distance.

Salvatore Mastrangelo (4590580)
Filippo Biscarini (3167496)
Marco Tolone (4590574)
Barbara Auzino (4747725)
Marco Ragatzu (4747731)
Andrea Spaterna (4747728)
Roberta Ciampolini (4374967)

December 2018

Per-breed LD decay (measured as r2) as a function of inter-marker distance in bps. The thicker line ...

Mean pairwise linkage disequilibrium (LD) estimates for different inter-SNP distance intervals.

Carina Visser (3172191)
Simon F. Lashmar (3172194)
Este Van Marle-Köster (3172200)
Mario A. Poli (3172197)
Daniel Allain (335082)

May 2016

<p>Mean pairwise linkage disequilibrium (LD) estimates for different inter-SNP distance intervals.</...

Average pair wise genetic distances within and between green anole populations.

Marc Tollis (159485)
Gavriel Ausubel (159489)
Dhruba Ghimire (159494)
Stéphane Boissinot (159500)

June 2012

<p>Main Diagonal (bold): Top entry is average p-distance within the population calculated from nDNA....

Nei’s distance (d) and average number of pairwise differences within and between populations.

Caitlin J. Curry (838069)
Paula A. White (693481)
James N. Derr (108531)

December 2015

<p>Nei’s distance (d) and average number of pairwise differences within and between populations.</p

Average linkage disequilibrium (LD) between any two SNPs within 0.2 Mb distance across the genome.

Jian Zeng (182624)
Dorian Garrick (3572441)
Jack Dekkers (3439892)
Rohan Fernando (433181)

March 2018

<p>The shaded areas indicate one standard deviation departures from the average. The average distanc...

Average inter- and intraspecific pairwise distances for each section using the chloroplast combination data.

An-Pei Zhou (5949821)
Dan Zong (5949824)
Pei-Hua Gan (5949827)
Xin-Lian Zou (5949830)
Yao Zhang (134381)
Li Dan (588357)
Cheng-Zhong He (5949833)

November 2018

Average inter- and intraspecific pairwise distances for each section using the chloroplast combinati...

Extent of LD (predicted r<sup>2</sup>) as a function of inter-SNP distance between Chinese and Western pigs and within each population.

Huashui Ai (136679)
Lusheng Huang (110011)
Jun Ren (110002)

February 2013

<p>Extent of LD (predicted r<sup>2</sup>) as a function of inter-SNP distance between Chinese and We...

Number of markers and average distance between markers on each linkage group in the mungbean linkage map.

Takehisa Isemura (146717)
Akito Kaga (146724)
Satoshi Tabata (50876)
Prakit Somta (146733)
Peerasak Srinives (146740)
Takehiko Shimizu (146744)
Uken Jo (146748)
Duncan A. Vaughan (146751)
Norihiko Tomooka (146754)

August 2012

<p>Number of markers and average distance between markers on each linkage group in the mungbean link...

Estimates of evolutionary distances between genotypes.

Renata Servan de Almeida (144079)
Saliha Hammoumi (52860)
Patricia Gil (52867)
François-Xavier Briand (237282)
Sophie Molia (473796)
Nicolas Gaidet (52859)
Julien Cappelle (52864)
Véronique Chevalier (3122862)
Gilles Balança (144095)
Abdallah Traoré (473797)
Colette Grillet (473798)
Olivier Fridolin Maminiaina (473799)
Samia Guendouz (473800)
Marthin Dakouo (473801)
Kassim Samaké (473802)
Ould El Mamy Bezeid (473803)
Abbas Diarra (473804)
Hassen Chaka (473805)
Flavie Goutard (473806)
Peter Thompson (165468)
Dominique Martinez (229854)
Véronique Jestin (237321)
Emmanuel Albina (237288)

October 2013

<p>Average intergenotype distance: 0.190.</p><p>Average intragenotype distance: 0.038.</p

Estimation of LD between each pair of loci.

Haojie Yang (488653)
Bo Zhang (6559)
Jialin Zhu (488654)
Dan Liu (108669)
Fanglin Guan (488655)
Xijing He (162686)

November 2013

<p>D′-value are shown below the subtraction sign, and r2-value are shown above the subtraction sign....

LD based on r<sup>2</sup>, averaged for map distance classes and germplasm groups based on population structure analysis in the STRUCTURE.

Carolina Font i Forcada (760886)
Nnadozie Oraguzie (760887)
Sebastian Reyes-Chin-Wo (281014)
Maria Teresa Espiau (760888)
Rafael Socias i Company (760889)
Angel Fernández i Martí (760890)

June 2015

<p>* Number of marker pairs included in each class. The analysis of linkage disequilibrium (LD) reve...

Average distance and LD between adjacent markers in different marker sets.

Hongjun Liu (664738)
Huangkai Zhou (765531)
Yongsheng Wu (756180)
Xiao Li (107004)
Jing Zhao (21160)
Tao Zuo (350509)
Xuan Zhang (56049)
Yongzhong Zhang (765532)
Sisi Liu (420299)
Yaou Shen (176530)
Haijian Lin (176545)
Zhiming Zhang (176541)
Kaijian Huang (765533)
Thomas Lübberstedt (34645)
Guangtang Pan (176561)

July 2015

<p><sup>a</sup> Average physical distance (in Mb) between adjacent markers.</p><p><sup>b</sup> Avera...

Average intra-chromosomal LD decay.

Andrea Bellucci (3841825)
Alessandro Tondelli (3167490)
Jonatan U. Fangel (1635247)
Anna Maria Torp (3841828)
Xin Xu (11989)
William G. T. Willats (167347)
Andrew Flavell (532393)
Luigi Cattivelli (114697)
Søren K. Rasmussen (290396)

March 2017

<p>r<sup>2</sup> values of LD are plotted as a function of the distance between pairs of markers con...

Average LD decay distance(cM) in different chromosomes in the total panel, G1 and G2 groups for locus pairs with <i>r</i><sup>2</sup>>0.1 at P<0.05.

Yunlei Zhao (513275)
Hongmei Wang (190581)
Wei Chen (23863)
Yunhai Li (513276)

January 2014

a<p>The total panel for the 158 cotton lines</p>b<p>The short horizontal line means that only a few ...

Relationship of the difference between observed and simulated LD against genetic distance of 790 SNP markers across all chromosomes.

Nick Fradgley (6411878)
Keith A. Gardner (5480831)
James Cockram (44385)
James Elderfield (6411881)
John M. Hickey (539463)
Phil Howell (6411884)
Robert Jackson (296471)
Ian J. Mackay (5480843)

March 2019

The horizontal dashed line indicates the average linkage between markers on different chromosomes. L...

LD decay as a function of bps distance.

Salvatore Mastrangelo (4590580)
Filippo Biscarini (3167496)
Marco Tolone (4590574)
Barbara Auzino (4747725)
Marco Ragatzu (4747731)
Andrea Spaterna (4747728)
Roberta Ciampolini (4374967)

December 2018

Per-breed LD decay (measured as r2) as a function of inter-marker distance in bps. The thicker line ...

Mean pairwise linkage disequilibrium (LD) estimates for different inter-SNP distance intervals.

Carina Visser (3172191)
Simon F. Lashmar (3172194)
Este Van Marle-Köster (3172200)
Mario A. Poli (3172197)
Daniel Allain (335082)

May 2016

<p>Mean pairwise linkage disequilibrium (LD) estimates for different inter-SNP distance intervals.</...

Average pair wise genetic distances within and between green anole populations.

Marc Tollis (159485)
Gavriel Ausubel (159489)
Dhruba Ghimire (159494)
Stéphane Boissinot (159500)

June 2012

<p>Main Diagonal (bold): Top entry is average p-distance within the population calculated from nDNA....

Nei’s distance (d) and average number of pairwise differences within and between populations.

Caitlin J. Curry (838069)
Paula A. White (693481)
James N. Derr (108531)

December 2015

<p>Nei’s distance (d) and average number of pairwise differences within and between populations.</p

Average linkage disequilibrium (LD) between any two SNPs within 0.2 Mb distance across the genome.

Jian Zeng (182624)
Dorian Garrick (3572441)
Jack Dekkers (3439892)
Rohan Fernando (433181)

March 2018

<p>The shaded areas indicate one standard deviation departures from the average. The average distanc...

Average inter- and intraspecific pairwise distances for each section using the chloroplast combination data.

An-Pei Zhou (5949821)
Dan Zong (5949824)
Pei-Hua Gan (5949827)
Xin-Lian Zou (5949830)
Yao Zhang (134381)
Li Dan (588357)
Cheng-Zhong He (5949833)

November 2018

Average inter- and intraspecific pairwise distances for each section using the chloroplast combinati...

Extent of LD (predicted r<sup>2</sup>) as a function of inter-SNP distance between Chinese and Western pigs and within each population.

Huashui Ai (136679)
Lusheng Huang (110011)
Jun Ren (110002)

February 2013

<p>Extent of LD (predicted r<sup>2</sup>) as a function of inter-SNP distance between Chinese and We...

Number of markers and average distance between markers on each linkage group in the mungbean linkage map.

Takehisa Isemura (146717)
Akito Kaga (146724)
Satoshi Tabata (50876)
Prakit Somta (146733)
Peerasak Srinives (146740)
Takehiko Shimizu (146744)
Uken Jo (146748)
Duncan A. Vaughan (146751)
Norihiko Tomooka (146754)

August 2012

<p>Number of markers and average distance between markers on each linkage group in the mungbean link...

Estimates of evolutionary distances between genotypes.

Renata Servan de Almeida (144079)
Saliha Hammoumi (52860)
Patricia Gil (52867)
François-Xavier Briand (237282)
Sophie Molia (473796)
Nicolas Gaidet (52859)
Julien Cappelle (52864)
Véronique Chevalier (3122862)
Gilles Balança (144095)
Abdallah Traoré (473797)
Colette Grillet (473798)
Olivier Fridolin Maminiaina (473799)
Samia Guendouz (473800)
Marthin Dakouo (473801)
Kassim Samaké (473802)
Ould El Mamy Bezeid (473803)
Abbas Diarra (473804)
Hassen Chaka (473805)
Flavie Goutard (473806)
Peter Thompson (165468)
Dominique Martinez (229854)
Véronique Jestin (237321)
Emmanuel Albina (237288)

October 2013

<p>Average intergenotype distance: 0.190.</p><p>Average intragenotype distance: 0.038.</p

Estimation of LD between each pair of loci.

Haojie Yang (488653)
Bo Zhang (6559)
Jialin Zhu (488654)
Dan Liu (108669)
Fanglin Guan (488655)
Xijing He (162686)

November 2013

<p>D′-value are shown below the subtraction sign, and r2-value are shown above the subtraction sign....