Additional file 24: Figure S11. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence
- Sebastian Eves-van den Akker (515790)
- Dominik Laetsch (3247056)
- Peter Thorpe (3247047)
- Catherine Lilley (3247038)
- Etienne Danchin (2912072)
- Martine Da Rocha (115956)
- Corinne Rancurel (47753)
- Nancy Holroyd (192338)
- James Cotton (27635)
- Amir Szitenberg (3247062)
- Eric Grenier (260386)
- Josselin Montarry (169779)
- Benjamin Mimee (3246378)
- Marc-Olivier Duceppe (3246375)
- Ian Boyes (3247044)
- Jessica Marvin (3247032)
- Laura Jones (365447)
- Hazijah Yusup (3247035)
- JoĂŤl Lafond-Lapalme (3490211)
- Magali Esquibet (3247041)
- Michael Sabeh (3247026)
- Michael Rott (3247053)
- Hein Overmars (3247029)
- Anna Finkers-Tomczak (673072)
- Geert Smant (260398)
- Georgios Koutsovoulos (556628)
- Vivian Blok (691091)
- Sophie Mantelin (415091)
- Peter Cock (533886)
- Wendy Phillips (3247050)
- Bernard Henrissat (31550)
- Peter Urwin (3247059)
- Mark Blaxter (50235)
- John Jones (2102023)
Publication date
June 2016
DOIAbstract
Blob plots. A. Blob plot of the initial G. rostochiensis assembly, displaying some minor contamination from Actinobacteria and Ascomycota. Each scaffold is drawn as a circle based on its GC content (X-axis) and log-coverage (Y-axis), with a diameter proportional to its length and coloured by its taxonomic annotation at the phylum-level. In the legend, colours of phyla are listed together with scaffold-count, scaffold span and scaffold N50. The histograms above and to the right of the main scatter plot sum contig spans for GC proportion bins and log-coverage bins, respectively. B. Blob plot of the G. rostochiensis assembly after removal of contaminant scaffolds. (PDF 8314 kb
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