Additional file 3: Table S2. Description of the genes in the 249 and 110 clusters. A. List of 249 innate immunity genes that were had high expression in primary cells and low or absent expression in cell lines. B. List of 110 innate immunity genes that with low expression in resting CD4+ T cells and high expression in cell lines. The DESeq2 results of the differential expression analysis between primary CD4+ T cells and cell lines are indicated
Additional file 6. Table S9: Genes differentially expressed between HIV-1-infected compared to seron...
Additional file 5: Table S2. Comparison of gene expression between latency inducing and non-inducin...
Additional file 2. Table S3: Genes upregulated in each cluster in scRNA-seq total PBMC
Additional file 17: File S3. List of the 249-cluster used as input in Supplemental File 1
Additional file 8: Figure 6. Interferon (IFN) gamma signaling pathway. Representation of the IFN gam...
Additional file 11: Figure S8. IFN-γ-induced phosphorylation of Stat1. (A) T cell lines (CEM, Jurkat...
Additional file 3: Supplementary references to Table 1. Included is the literature documenting the a...
Background: Primary CD4+ T cells and cell lines differ in their permissiveness to HIV infection. Imp...
Additional file 14: Table S6. Table describing RNA-seq libraries that is used as an input for DESeq2...
Additional file 13: Table S5. RPKMs of the RNA-seq libraries sequenced in this work
Additional file 4: Figure S2. Differential gene expression assessed by microarray analysis between l...
Additional file 3: Studies used in a meta-analysis of differential expression during HIV infection. ...
Additional file 2: Analysis of Gene Ontology categories associated with differential expression duri...
Primary CD4+ T cells and cell lines differ in their permissiveness to HIV infection. Impaired innate...
Additional file 3. Table S4: Genes differentially expressed between HIV-1-infected compared to seron...
Additional file 6. Table S9: Genes differentially expressed between HIV-1-infected compared to seron...
Additional file 5: Table S2. Comparison of gene expression between latency inducing and non-inducin...
Additional file 2. Table S3: Genes upregulated in each cluster in scRNA-seq total PBMC
Additional file 17: File S3. List of the 249-cluster used as input in Supplemental File 1
Additional file 8: Figure 6. Interferon (IFN) gamma signaling pathway. Representation of the IFN gam...
Additional file 11: Figure S8. IFN-γ-induced phosphorylation of Stat1. (A) T cell lines (CEM, Jurkat...
Additional file 3: Supplementary references to Table 1. Included is the literature documenting the a...
Background: Primary CD4+ T cells and cell lines differ in their permissiveness to HIV infection. Imp...
Additional file 14: Table S6. Table describing RNA-seq libraries that is used as an input for DESeq2...
Additional file 13: Table S5. RPKMs of the RNA-seq libraries sequenced in this work
Additional file 4: Figure S2. Differential gene expression assessed by microarray analysis between l...
Additional file 3: Studies used in a meta-analysis of differential expression during HIV infection. ...
Additional file 2: Analysis of Gene Ontology categories associated with differential expression duri...
Primary CD4+ T cells and cell lines differ in their permissiveness to HIV infection. Impaired innate...
Additional file 3. Table S4: Genes differentially expressed between HIV-1-infected compared to seron...
Additional file 6. Table S9: Genes differentially expressed between HIV-1-infected compared to seron...
Additional file 5: Table S2. Comparison of gene expression between latency inducing and non-inducin...
Additional file 2. Table S3: Genes upregulated in each cluster in scRNA-seq total PBMC