Highly translated genes identified by ligation-free ribosome profiling are shifted to heavier polysomes. qPCR was performed with five probes on fractions isolated from a polysome profile from left frontal lobe brain tissue. a Genes found to be highly translated in ribosome profiling data, Snap-25 and Syt1, were found to be shifted to heavier polysomes; fractions 8 and 9. Genes found to be lowly translated, Tgfb1, Trpv6, and Pkd-1, were found to be most concentrated in lighter polysomes, fractions 4 and 5. b The polysome profile denotes from which portion of the profile fractions were obtained. (PDF 509 kb
Figure S3. (A–C) Correlation of the transcript levels between the housekeeping genes in unfixed and ...
Neuronal differentiation APA. This tab-delimited file contains the QAPA-estimated PAU and Sailfish T...
Transformed ribosome profiling, RNA-seq, and quantitative mass spectrometry data for genes that are ...
False discovery rate (FDR)-corrected p values for pairwise comparisons of each cell type at each TE ...
Visualization of the results of differential expression analysis for four pairs of brain regions wit...
Average expression of invariable genes in 4 GTEx brains. Shows the variation of 200 invariable genes...
Confirmation of expression levels by qRTPCR. qRTPCR was performed to correlate the FPKM of 3 invaria...
Table S1. Sequencing and mapping statistics. Listed are the sequencing details and mapping statistic...
Figure S1. Ribosome profiling of HeLa cells. Figure S2. Biophysical characterization of the rG4 moti...
Figure S1. Gene sets with significantly downregulated or upregulated mRNA transcripts in RA-Diff cel...
Comparison of NRXN3 isoform representation between OSU and GTEx brains. The ratio of the blue and or...
Distribution of sequencing reads mapping with 0, 1, 2, 3, 4, or 5 mismatches to the reference genome...
Table S2. Analysis of mRNA sequencing and Ribosome Profiling. All mRNA, RPF, and TE changes are list...
ZFAS1 is associated with actively translating ribosomes. (A) Polysome distribution of MDA-MB-468 cel...
Plot of AEI ratio versus read depth across SNP. Displays the average magnitude of the allelic expres...
Figure S3. (A–C) Correlation of the transcript levels between the housekeeping genes in unfixed and ...
Neuronal differentiation APA. This tab-delimited file contains the QAPA-estimated PAU and Sailfish T...
Transformed ribosome profiling, RNA-seq, and quantitative mass spectrometry data for genes that are ...
False discovery rate (FDR)-corrected p values for pairwise comparisons of each cell type at each TE ...
Visualization of the results of differential expression analysis for four pairs of brain regions wit...
Average expression of invariable genes in 4 GTEx brains. Shows the variation of 200 invariable genes...
Confirmation of expression levels by qRTPCR. qRTPCR was performed to correlate the FPKM of 3 invaria...
Table S1. Sequencing and mapping statistics. Listed are the sequencing details and mapping statistic...
Figure S1. Ribosome profiling of HeLa cells. Figure S2. Biophysical characterization of the rG4 moti...
Figure S1. Gene sets with significantly downregulated or upregulated mRNA transcripts in RA-Diff cel...
Comparison of NRXN3 isoform representation between OSU and GTEx brains. The ratio of the blue and or...
Distribution of sequencing reads mapping with 0, 1, 2, 3, 4, or 5 mismatches to the reference genome...
Table S2. Analysis of mRNA sequencing and Ribosome Profiling. All mRNA, RPF, and TE changes are list...
ZFAS1 is associated with actively translating ribosomes. (A) Polysome distribution of MDA-MB-468 cel...
Plot of AEI ratio versus read depth across SNP. Displays the average magnitude of the allelic expres...
Figure S3. (A–C) Correlation of the transcript levels between the housekeeping genes in unfixed and ...
Neuronal differentiation APA. This tab-delimited file contains the QAPA-estimated PAU and Sailfish T...
Transformed ribosome profiling, RNA-seq, and quantitative mass spectrometry data for genes that are ...