Additional file 2: of Technical validation of an RT-qPCR in vitro diagnostic test system for the determination of breast cancer molecular subtypes by quantification of ERBB2, ESR1, PGR and MKI67 mRNA levels from formalin-fixed paraffin-embedded breast tumor specimens

Additional file 1: of Serum erythropoietin levels, breast cancer and breast cancer-initiating cells

Kruttika Bhat (6279818)
Kiri Sandler (6279821)
Sara Duhachek-Muggy (467559)
Claudia Alli (6279827)
Fei Cheng (315348)
Neda Moatamed (6279833)
Clara Magyar (6279836)
Lin Du (311554)
Gang Li (34549)
Susan McCloskey (6279839)
Erina Vlashi (63897)
Frank Pajonk (59951)

January 2019

Primer sequences used in the qRT-PCR. Forward and reverse primers used in real time PCR. (DOCX 12 kb

Additional file 2: of Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

Mahesh Iddawela (3567311)
Oscar Rueda (3933074)
Jenny Eremin (4241659)
Oleg Eremin (2621164)
Jed Cowley (4241656)
Helena Earl (3500252)
Carlos Caldas (1042)

July 2017

Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...

Additional file 2: Figure S2. of Development of novel real-time PCR methodology for quantification of COL11A1 mRNA variants and evaluation in breast cancer tissue specimens

Makrina Karaglani (3503243)
Ioannis Toumpoulis (3503237)
Nikolaos Goutas (330673)
Nikoleta Poumpouridou (3503240)
Dimitrios Vlachodimitropoulos (37232)
Spyridon Vasilaros (3503246)
Ioannis Rizos (719591)
Christos Kroupis (3503234)

October 2015

PCR products from inverted capillaries of positive tumor samples for COL11A1 splice variant A run on...

Additional file 1: of Robustness of biomarker determination in breast cancer by RT-qPCR: impact of tumor cell content, DCIS and non-neoplastic breast tissue

Kerstin Hartmann (5876543)
Kornelia Schlombs (3583691)
Mark Laible (396335)
Claudia GĂźrtler (4018391)
Marcus Schmidt (58563)
Ugur Sahin (133198)
Hans-Anton Lehr (32405)

October 2018

MammatyperÂŽ relative gene expression and Î40-ddCq values are shown for the effect of adipose tissu...

Additional file 4: of Robustness of biomarker determination in breast cancer by RT-qPCR: impact of tumor cell content, DCIS and non-neoplastic breast tissue

Kerstin Hartmann (5876543)
Kornelia Schlombs (3583691)
Mark Laible (396335)
Claudia Gürtler (4018337)
Marcus Schmidt (58563)
Ugur Sahin (133198)
Hans-Anton Lehr (32405)

October 2018

Mammatyper® relative gene expression and Δ40-ddCq values are shown for the effect of DCIS. Tumor cel...

Additional file 2: of Robustness of biomarker determination in breast cancer by RT-qPCR: impact of tumor cell content, DCIS and non-neoplastic breast tissue

Kerstin Hartmann (5876543)
Kornelia Schlombs (3583691)
Mark Laible (396335)
Claudia GĂźrtler (4018391)
Marcus Schmidt (58563)
Ugur Sahin (133198)
Hans-Anton Lehr (32405)

October 2018

MammatyperÂŽ Median Cq values are shown for the effect of adipose tissue. (XLSX 16 kb

Additional file 3: of Robustness of biomarker determination in breast cancer by RT-qPCR: impact of tumor cell content, DCIS and non-neoplastic breast tissue

Kerstin Hartmann (5876543)
Kornelia Schlombs (3583691)
Mark Laible (396335)
Claudia GĂźrtler (4018391)
Marcus Schmidt (58563)
Ugur Sahin (133198)
Hans-Anton Lehr (32405)

October 2018

MammatyperÂŽ relative gene expression and Î40-ddCq values are shown for the effect of TCC. (XLSX 13...

Additional file 2: of Assessing breast cancer cell lines as tumour models by comparison of mRNA expression profiles

Krista Vincent (3576728)
Scott Findlay (3576725)
Lynne Postovit (3576731)

August 2015

Top 1 % of differentially expressed genes between tumours and cell lines (with adjusted p values by ...

Additional file 6: of Transcriptomic dynamics of breast cancer progression in the MMTV-PyMT mouse model

Ying Cai (22305)
Ruben Nogales-Cadenas (3502262)
Quanwei Zhang (626046)
Jhih-Rong Lin (3502259)
Wen Zhang (7555)
Kelly OâBrien (3435863)
Cristina Montagna (201365)
Zhengdong Zhang (48217)

February 2017

Figure S5. qPCR verification and validation of gene expression. (A) qPCR verification using the same...

Additional file 3: of Assessing breast cancer cell lines as tumour models by comparison of mRNA expression profiles

Krista Vincent (3576728)
Scott Findlay (3576725)
Lynne Postovit (3576731)

August 2015

Top 1 % of differentially expressed genes between tumours and cell lines after filtering out genes c...

Additional file 2: of Comparison of the types of candidate reference samples for quality control of human epidermal growth factor receptor 2 status detection

Yulong Li (748754)
Rui Zhang (13940)
Yanxi Han (3108240)
Tian Lu (1624171)
Jiansheng Ding (3478367)
Kuo Zhang (337825)
Guigao Lin (128854)
Jiehong Xie (754260)
Jinming Li (128865)

September 2016

The detailed results of HER2 protein expression status evaluated by IHC assay. A-1 to A-4 were secti...

Additional file 2: of Single sample scoring of molecular phenotypes

Momeneh Foroutan (5940173)
Dharmesh Bhuva (5940179)
Ruqian Lyu (5940182)
Kristy Horan (5940188)
Joseph Cursons (3763120)
Melissa Davis (3522224)

November 2018

This includes IDs for 500 of the overlapping samples between the TCGA breast cancer RNA-seq and micr...

Additional file 4: of Assessing breast cancer cell lines as tumour models by comparison of mRNA expression profiles

Krista Vincent (3576728)
Scott Findlay (3576725)
Lynne Postovit (3576731)

August 2015

Comparison of the frequency of select mutational events in breast cancer tumours versus cell lines. ...

Additional file 1: Table S1. of Comparing gene expression data from formalin-fixed, paraffin embedded tissues and qPCR with that from snap-frozen tissue and microarrays for modeling outcomes of patients with ovarian carcinoma

William Bradley (3548348)
Kevin Eng (745773)
Min Le (3548351)
A. Mackinnon (3548354)
Christina Kendziorski (42423)
Janet Rader (547447)

September 2015

Gene list. Table S2. Pathway list and genes in the pathway. Table S3. Scale and center data used for...

Additional file 1: Table S1. of Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples

Sofia Waldemarson (1287219)
Emila Kurbasic (3417746)
Morten Krogh (26886)
Paolo Cifani (1575613)
Tord BerggĂĽrd (3417749)
Ăke Borg (3417743)
Peter James (348853)

June 2016

The clinical parameters of the tumors used in the 2D-DIGE analysis are given in this table: Sex, tum...

Additional file 1: of Serum erythropoietin levels, breast cancer and breast cancer-initiating cells

Kruttika Bhat (6279818)
Kiri Sandler (6279821)
Sara Duhachek-Muggy (467559)
Claudia Alli (6279827)
Fei Cheng (315348)
Neda Moatamed (6279833)
Clara Magyar (6279836)
Lin Du (311554)
Gang Li (34549)
Susan McCloskey (6279839)
Erina Vlashi (63897)
Frank Pajonk (59951)

January 2019

Primer sequences used in the qRT-PCR. Forward and reverse primers used in real time PCR. (DOCX 12 kb

Additional file 2: of Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

Mahesh Iddawela (3567311)
Oscar Rueda (3933074)
Jenny Eremin (4241659)
Oleg Eremin (2621164)
Jed Cowley (4241656)
Helena Earl (3500252)
Carlos Caldas (1042)

July 2017

Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...

Additional file 2: Figure S2. of Development of novel real-time PCR methodology for quantification of COL11A1 mRNA variants and evaluation in breast cancer tissue specimens

Makrina Karaglani (3503243)
Ioannis Toumpoulis (3503237)
Nikolaos Goutas (330673)
Nikoleta Poumpouridou (3503240)
Dimitrios Vlachodimitropoulos (37232)
Spyridon Vasilaros (3503246)
Ioannis Rizos (719591)
Christos Kroupis (3503234)

October 2015

PCR products from inverted capillaries of positive tumor samples for COL11A1 splice variant A run on...

Additional file 1: of Robustness of biomarker determination in breast cancer by RT-qPCR: impact of tumor cell content, DCIS and non-neoplastic breast tissue

Kerstin Hartmann (5876543)
Kornelia Schlombs (3583691)
Mark Laible (396335)
Claudia GĂźrtler (4018391)
Marcus Schmidt (58563)
Ugur Sahin (133198)
Hans-Anton Lehr (32405)

October 2018

MammatyperÂŽ relative gene expression and Î40-ddCq values are shown for the effect of adipose tissu...

Additional file 4: of Robustness of biomarker determination in breast cancer by RT-qPCR: impact of tumor cell content, DCIS and non-neoplastic breast tissue

Kerstin Hartmann (5876543)
Kornelia Schlombs (3583691)
Mark Laible (396335)
Claudia Gürtler (4018337)
Marcus Schmidt (58563)
Ugur Sahin (133198)
Hans-Anton Lehr (32405)

October 2018

Mammatyper® relative gene expression and Δ40-ddCq values are shown for the effect of DCIS. Tumor cel...

Additional file 2: of Robustness of biomarker determination in breast cancer by RT-qPCR: impact of tumor cell content, DCIS and non-neoplastic breast tissue

Kerstin Hartmann (5876543)
Kornelia Schlombs (3583691)
Mark Laible (396335)
Claudia GĂźrtler (4018391)
Marcus Schmidt (58563)
Ugur Sahin (133198)
Hans-Anton Lehr (32405)

October 2018

MammatyperÂŽ Median Cq values are shown for the effect of adipose tissue. (XLSX 16 kb

Additional file 3: of Robustness of biomarker determination in breast cancer by RT-qPCR: impact of tumor cell content, DCIS and non-neoplastic breast tissue

Kerstin Hartmann (5876543)
Kornelia Schlombs (3583691)
Mark Laible (396335)
Claudia GĂźrtler (4018391)
Marcus Schmidt (58563)
Ugur Sahin (133198)
Hans-Anton Lehr (32405)

October 2018

MammatyperÂŽ relative gene expression and Î40-ddCq values are shown for the effect of TCC. (XLSX 13...

Additional file 2: of Assessing breast cancer cell lines as tumour models by comparison of mRNA expression profiles

Krista Vincent (3576728)
Scott Findlay (3576725)
Lynne Postovit (3576731)

August 2015

Top 1 % of differentially expressed genes between tumours and cell lines (with adjusted p values by ...

Additional file 6: of Transcriptomic dynamics of breast cancer progression in the MMTV-PyMT mouse model

Ying Cai (22305)
Ruben Nogales-Cadenas (3502262)
Quanwei Zhang (626046)
Jhih-Rong Lin (3502259)
Wen Zhang (7555)
Kelly OâBrien (3435863)
Cristina Montagna (201365)
Zhengdong Zhang (48217)

February 2017

Figure S5. qPCR verification and validation of gene expression. (A) qPCR verification using the same...

Additional file 3: of Assessing breast cancer cell lines as tumour models by comparison of mRNA expression profiles

Krista Vincent (3576728)
Scott Findlay (3576725)
Lynne Postovit (3576731)

August 2015

Top 1 % of differentially expressed genes between tumours and cell lines after filtering out genes c...

Additional file 2: of Comparison of the types of candidate reference samples for quality control of human epidermal growth factor receptor 2 status detection

Yulong Li (748754)
Rui Zhang (13940)
Yanxi Han (3108240)
Tian Lu (1624171)
Jiansheng Ding (3478367)
Kuo Zhang (337825)
Guigao Lin (128854)
Jiehong Xie (754260)
Jinming Li (128865)

September 2016

The detailed results of HER2 protein expression status evaluated by IHC assay. A-1 to A-4 were secti...

Additional file 2: of Single sample scoring of molecular phenotypes

Momeneh Foroutan (5940173)
Dharmesh Bhuva (5940179)
Ruqian Lyu (5940182)
Kristy Horan (5940188)
Joseph Cursons (3763120)
Melissa Davis (3522224)

November 2018

This includes IDs for 500 of the overlapping samples between the TCGA breast cancer RNA-seq and micr...

Additional file 4: of Assessing breast cancer cell lines as tumour models by comparison of mRNA expression profiles

Krista Vincent (3576728)
Scott Findlay (3576725)
Lynne Postovit (3576731)

August 2015

Comparison of the frequency of select mutational events in breast cancer tumours versus cell lines. ...

Additional file 1: Table S1. of Comparing gene expression data from formalin-fixed, paraffin embedded tissues and qPCR with that from snap-frozen tissue and microarrays for modeling outcomes of patients with ovarian carcinoma

William Bradley (3548348)
Kevin Eng (745773)
Min Le (3548351)
A. Mackinnon (3548354)
Christina Kendziorski (42423)
Janet Rader (547447)

September 2015

Gene list. Table S2. Pathway list and genes in the pathway. Table S3. Scale and center data used for...

Additional file 1: Table S1. of Proteomic analysis of breast tumors confirms the mRNA intrinsic molecular subtypes using different classifiers: a large-scale analysis of fresh frozen tissue samples

Sofia Waldemarson (1287219)
Emila Kurbasic (3417746)
Morten Krogh (26886)
Paolo Cifani (1575613)
Tord BerggĂĽrd (3417749)
Ăke Borg (3417743)
Peter James (348853)

June 2016

The clinical parameters of the tumors used in the 2D-DIGE analysis are given in this table: Sex, tum...

Additional file 1: of Serum erythropoietin levels, breast cancer and breast cancer-initiating cells

Kruttika Bhat (6279818)
Kiri Sandler (6279821)
Sara Duhachek-Muggy (467559)
Claudia Alli (6279827)
Fei Cheng (315348)
Neda Moatamed (6279833)
Clara Magyar (6279836)
Lin Du (311554)
Gang Li (34549)
Susan McCloskey (6279839)
Erina Vlashi (63897)
Frank Pajonk (59951)

January 2019

Primer sequences used in the qRT-PCR. Forward and reverse primers used in real time PCR. (DOCX 12 kb

Additional file 2: of Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

Mahesh Iddawela (3567311)
Oscar Rueda (3933074)
Jenny Eremin (4241659)
Oleg Eremin (2621164)
Jed Cowley (4241656)
Helena Earl (3500252)
Carlos Caldas (1042)

July 2017

Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...

Additional file 2: Figure S2. of Development of novel real-time PCR methodology for quantification of COL11A1 mRNA variants and evaluation in breast cancer tissue specimens

Makrina Karaglani (3503243)
Ioannis Toumpoulis (3503237)
Nikolaos Goutas (330673)
Nikoleta Poumpouridou (3503240)
Dimitrios Vlachodimitropoulos (37232)
Spyridon Vasilaros (3503246)
Ioannis Rizos (719591)
Christos Kroupis (3503234)

October 2015

PCR products from inverted capillaries of positive tumor samples for COL11A1 splice variant A run on...

Additional file 2: of Technical validation of an RT-qPCR in vitro diagnostic test system for the determination of breast cancer molecular subtypes by quantification of ERBB2, ESR1, PGR and MKI67 mRNA levels from formalin-fixed paraffin-embedded breast tumor specimens

Abstract

Extracted data

Additional file 2: of Technical validation of an RT-qPCR in vitro diagnostic test system for the determination of breast cancer molecular subtypes by quantification of ERBB2, ESR1, PGR and MKI67 mRNA levels from formalin-fixed paraffin-embedded breast tumor specimens

Abstract

Extracted data

Related items

Related items