Additional file 3: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Central metabolic network map displaying selected mass isotopomer distributions of the central metabolites measured by LC-MS of M. extorquens AM1 growth upon co-consumption with 13C (>99%) methanol and natural abundance (1.1% 13C) succinate.

Rémi Peyraud (124021)
Patrick Kiefer (17817)
Philipp Christen (85893)
Jean-Charles Portais (17821)
Julia A. Vorholt (124029)

November 2012

The precursors of the amino acids measured in the central metabolism and directly measured metabo...

MOESM1 of Metabolome analysis-based design and engineering of a metabolic pathway in Corynebacterium glutamicum to match rates of simultaneous utilization of d-glucose and l-arabinose

Hideo Kawaguchi (755933)
Kumiko Yoshihara (845848)
Kiyotaka Hara (3535955)
Tomohisa Hasunuma (667009)
Chiaki Ogino (163485)
Akihiko Kondo (163500)

May 2018

Additional file 1: Table S1. Specific growth rates and specific sugar consumption rates by recombina...

Additional file 3: of Genome-scale metabolic model of Rhodococcus jostii RHA1 (iMT1174) to study the accumulation of storage compounds during nitrogen-limited condition

Mohammad Tajparast (3585758)
Dominic Frigon (1606528)

August 2015

Unique reactions and metabolites, along with their properties, that are involved in the i MT1174Â ne...

Additional file 2: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Yanfen Fu (3528884)
David Beck (3411203)
Mary Lidstrom (3411206)

July 2016

Central carbon metabolism model for M. extorquens AM1 and list of metabolites with full name. (XLSX ...

Additional file 5: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Yanfen Fu (3528884)
David Beck (3411203)
Mary Lidstrom (3411206)

July 2016

Detailed table for simulated flux distribution with relative values to specific methanol uptake rate...

Additional file 1: of Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes

Suzanne Kosina (3469994)
Annette Greiner (1890286)
Rebecca Lau (3664084)
Stefan Jenkins (3690490)
Richard Baran (1898434)
Benjamin Bowen (740647)
Trent Northen (3569411)

November 2018

Experimental considerations for exometabolomics. Metabolite identification considerations. Methods f...

Additional file 1: of Development and validation of an updated computational model of Streptomyces coelicolor primary and secondary metabolism

Adam Amara (5482952)
Eriko Takano (50986)
Rainer Breitling (4371)

July 2018

Containing the Table S3. Summary table of the updates and new features added to the iAA1259 model co...

Additional file 1: Figure S1. of Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis

Christopher Garay (3565379)
Jonathan Dreyfuss (3565376)
James Galagan (185365)

September 2015

Distribution of maximum flux capacities for all model metabolites. Histogram of MFC values for all m...

Additional file 3: of The potential for non-adaptive origins of evolutionary innovations in central carbon metabolism

Sayed-Rzgar Hosseini (781424)
Andreas Wagner (3323)

October 2016

Metabolisms viable on a given carbon source vary widely in their exaptation potential. Histogram of ...

MOESM1 of Diversity of flux distribution in central carbon metabolism of S. cerevisiae strains from diverse environments

Thibault Nidelet (3240648)
Pascale Brial (205201)
Carole Camarasa (205193)
Sylvie Dequin (205208)

April 2016

Additional file 1. Table S1: Strains' origin and experimental data. Table S2: Modelâs metabolites ...

Additional file 1 of A novel strategy for D-psicose and lipase co-production using a co-culture system of engineered Bacillus subtilis and Escherichia coli and bioprocess analysis using metabolomics

Jun Zhang (11303562)
Wen Luo (513300)
Zhiyuan Wang (535663)
Xiaoyan Chen (146508)
Pengmei Lv (4116553)
Jingliang Xu (11303565)

August 2021

Additional file 1. Table S1. Groups information of metabolomics samples. Table S2. PCA and OPLS-DA m...

AdditionalÂ fileÂ 7:

Itai Opatovsky (3284916)
Diego Santos-Garcia (192520)
Zhepu Ruan (5290991)
Tamar Lahav (266531)
Shany Ofaim (5290988)
Laurence Mouton (349454)
ValĂŠrie Barbe (3467588)
Jiandong Jiang (429653)
Einat Zchori-Fein (349455)
Shiri Freilich (24423)

May 2018

Illustration of the model used to simulate growth, calculate metabolic overlap, and estimate the eff...

Additional file 4 of Towards in vivo estimation of reaction kinetics using high-throughput metabolomics data: a maximum likelihood approach

Weiruo Zhang (3480806)
Ritesh Kolte (3480803)
David Dill (3480800)

October 2015

Standard Gibbs Free Energy of Formation MetaCyc. This file provides standard Gibbs Free Energy of Fo...

Additional file 17: of The potential for non-adaptive origins of evolutionary innovations in central carbon metabolism

Sayed-Rzgar Hosseini (781424)
Andreas Wagner (3323)

October 2016

Larger metabolisms have higher biomass yield. Mean of biomass yield among metabolisms of a given siz...

MOESM3 of Metabolome- and genome-scale model analyses for engineering of Aureobasidium pullulans to enhance polymalic acid and malic acid production from sugarcane molasses

Jun Feng (116162)
Jing Yang (13969)
Wenwen Yang (428612)
Jie Chen (5892)
Min Jiang (56794)
Xiang Zou (706903)

April 2018

Additional file 3: Figure S1. The statistical numbers of differential metabolites between groups. Re...

Central metabolic network map displaying selected mass isotopomer distributions of the central metabolites measured by LC-MS of M. extorquens AM1 growth upon co-consumption with 13C (>99%) methanol and natural abundance (1.1% 13C) succinate.

Rémi Peyraud (124021)
Patrick Kiefer (17817)
Philipp Christen (85893)
Jean-Charles Portais (17821)
Julia A. Vorholt (124029)

November 2012

The precursors of the amino acids measured in the central metabolism and directly measured metabo...

MOESM1 of Metabolome analysis-based design and engineering of a metabolic pathway in Corynebacterium glutamicum to match rates of simultaneous utilization of d-glucose and l-arabinose

Hideo Kawaguchi (755933)
Kumiko Yoshihara (845848)
Kiyotaka Hara (3535955)
Tomohisa Hasunuma (667009)
Chiaki Ogino (163485)
Akihiko Kondo (163500)

May 2018

Additional file 1: Table S1. Specific growth rates and specific sugar consumption rates by recombina...

Additional file 3: of Genome-scale metabolic model of Rhodococcus jostii RHA1 (iMT1174) to study the accumulation of storage compounds during nitrogen-limited condition

Mohammad Tajparast (3585758)
Dominic Frigon (1606528)

August 2015

Unique reactions and metabolites, along with their properties, that are involved in the i MT1174Â ne...

Additional file 2: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Yanfen Fu (3528884)
David Beck (3411203)
Mary Lidstrom (3411206)

July 2016

Central carbon metabolism model for M. extorquens AM1 and list of metabolites with full name. (XLSX ...

Additional file 5: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Yanfen Fu (3528884)
David Beck (3411203)
Mary Lidstrom (3411206)

July 2016

Detailed table for simulated flux distribution with relative values to specific methanol uptake rate...

Additional file 1: of Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes

Suzanne Kosina (3469994)
Annette Greiner (1890286)
Rebecca Lau (3664084)
Stefan Jenkins (3690490)
Richard Baran (1898434)
Benjamin Bowen (740647)
Trent Northen (3569411)

November 2018

Experimental considerations for exometabolomics. Metabolite identification considerations. Methods f...

Additional file 1: of Development and validation of an updated computational model of Streptomyces coelicolor primary and secondary metabolism

Adam Amara (5482952)
Eriko Takano (50986)
Rainer Breitling (4371)

July 2018

Containing the Table S3. Summary table of the updates and new features added to the iAA1259 model co...

Additional file 1: Figure S1. of Metabolic modeling predicts metabolite changes in Mycobacterium tuberculosis

Christopher Garay (3565379)
Jonathan Dreyfuss (3565376)
James Galagan (185365)

September 2015

Distribution of maximum flux capacities for all model metabolites. Histogram of MFC values for all m...

Additional file 3: of The potential for non-adaptive origins of evolutionary innovations in central carbon metabolism

Sayed-Rzgar Hosseini (781424)
Andreas Wagner (3323)

October 2016

Metabolisms viable on a given carbon source vary widely in their exaptation potential. Histogram of ...

MOESM1 of Diversity of flux distribution in central carbon metabolism of S. cerevisiae strains from diverse environments

Thibault Nidelet (3240648)
Pascale Brial (205201)
Carole Camarasa (205193)
Sylvie Dequin (205208)

April 2016

Additional file 1. Table S1: Strains' origin and experimental data. Table S2: Modelâs metabolites ...

Additional file 1 of A novel strategy for D-psicose and lipase co-production using a co-culture system of engineered Bacillus subtilis and Escherichia coli and bioprocess analysis using metabolomics

Jun Zhang (11303562)
Wen Luo (513300)
Zhiyuan Wang (535663)
Xiaoyan Chen (146508)
Pengmei Lv (4116553)
Jingliang Xu (11303565)

August 2021

Additional file 1. Table S1. Groups information of metabolomics samples. Table S2. PCA and OPLS-DA m...

AdditionalÂ fileÂ 7:

Itai Opatovsky (3284916)
Diego Santos-Garcia (192520)
Zhepu Ruan (5290991)
Tamar Lahav (266531)
Shany Ofaim (5290988)
Laurence Mouton (349454)
ValĂŠrie Barbe (3467588)
Jiandong Jiang (429653)
Einat Zchori-Fein (349455)
Shiri Freilich (24423)

May 2018

Illustration of the model used to simulate growth, calculate metabolic overlap, and estimate the eff...

Additional file 4 of Towards in vivo estimation of reaction kinetics using high-throughput metabolomics data: a maximum likelihood approach

Weiruo Zhang (3480806)
Ritesh Kolte (3480803)
David Dill (3480800)

October 2015

Standard Gibbs Free Energy of Formation MetaCyc. This file provides standard Gibbs Free Energy of Fo...

Additional file 17: of The potential for non-adaptive origins of evolutionary innovations in central carbon metabolism

Sayed-Rzgar Hosseini (781424)
Andreas Wagner (3323)

October 2016

Larger metabolisms have higher biomass yield. Mean of biomass yield among metabolisms of a given siz...

MOESM3 of Metabolome- and genome-scale model analyses for engineering of Aureobasidium pullulans to enhance polymalic acid and malic acid production from sugarcane molasses

Jun Feng (116162)
Jing Yang (13969)
Wenwen Yang (428612)
Jie Chen (5892)
Min Jiang (56794)
Xiang Zou (706903)

April 2018

Additional file 3: Figure S1. The statistical numbers of differential metabolites between groups. Re...

Central metabolic network map displaying selected mass isotopomer distributions of the central metabolites measured by LC-MS of M. extorquens AM1 growth upon co-consumption with 13C (>99%) methanol and natural abundance (1.1% 13C) succinate.

Rémi Peyraud (124021)
Patrick Kiefer (17817)
Philipp Christen (85893)
Jean-Charles Portais (17821)
Julia A. Vorholt (124029)

November 2012

The precursors of the amino acids measured in the central metabolism and directly measured metabo...

MOESM1 of Metabolome analysis-based design and engineering of a metabolic pathway in Corynebacterium glutamicum to match rates of simultaneous utilization of d-glucose and l-arabinose

Hideo Kawaguchi (755933)
Kumiko Yoshihara (845848)
Kiyotaka Hara (3535955)
Tomohisa Hasunuma (667009)
Chiaki Ogino (163485)
Akihiko Kondo (163500)

May 2018

Additional file 1: Table S1. Specific growth rates and specific sugar consumption rates by recombina...

Additional file 3: of Genome-scale metabolic model of Rhodococcus jostii RHA1 (iMT1174) to study the accumulation of storage compounds during nitrogen-limited condition

Mohammad Tajparast (3585758)
Dominic Frigon (1606528)

August 2015

Unique reactions and metabolites, along with their properties, that are involved in the i MT1174Â ne...

Additional file 3: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Abstract

Extracted data

Additional file 3: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Abstract

Extracted data

Topics

Related items

Topics

Related items

Additional file 3: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Abstract

Extracted data

Additional file 3: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Abstract

Extracted data

Topics

Related items

Topics

Related items

Additional file 3: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1

Additional file 3: of Difference in C3âC4 metabolism underlies tradeoff between growth rate and biomass yield in Methylobacterium extorquens AM1