<p><i>lacZ</i> fusions to RNA encoding the 5’-uORF (A) or to the coding sequence (CDS) of the downstream gene (B-D). The 5’-uAUG is either maintained as AUG (CDS), mutated to AUC (KO) or contains a premature stop codon (StartStop). The arrow indicates the in-frame AUG start codon defining the ORF providing expression of the <i>lacZ</i> reporter gene.</p
<p>A. Validation of the fusion genes from BT-474 and MCF-7 on the cDNA level by RT-PCR. B. Genomic D...
<p>(A) Schematics of the engineered L1 constructs. The L1 5′UTR (gray rectangle), ORF1 (yellow recta...
<p>(A) 5′ RACE was performed on cells transduced with <i>eGFP</i>←D4Z4 lentivirus using primers base...
Numbers of codons in u-ORF are shown above each panel. SD represents the SD sequence (5’-AGGA-3’). U...
Numbers of codons in u-ORF are shown above each panel. SD represents the SD sequence (5’-AGGA-3’). A...
<p>Expression levels from downstream CDS fusions to <i>lacZ</i> that contain an intact 5’-uAUG (CDS)...
<p><b>A</b>. Diagram depicting the in vitro generated L 5′-UTR GFP mRNA reporter constructs with per...
<p>Representations of the <i>nadA</i> (<b>A</b>), <i>farR</i> (<b>B</b>), and <i>mtrR</i> (<b>C</b>)...
<p>The region of the <i>P. chlororaphis</i> 30–84 chromosome that contains the promoter of the phena...
E. coli LJ14 cells harboring plasmids were grown at 28°C to a cell density of ~0.13 as described in ...
Nucleotide sequence and the distance (D and d) between AUG and UAA at the junction regions are indic...
Numbers in square brackets shown above each panel represent the reading frame of d-ORF counting from...
<p>In these primer sets, the forward and reverse primers contain <i>Eco</i>RI and <i>Xho</i>I recogn...
<p><b>A</b>. L 5′-UTR GFP mRNA reporter constructs were generated such that the uORF is fused in fra...
Anscriptional start sites (TSSs). The sequences are represented by solid grey rectangles. Cotranscri...
<p>A. Validation of the fusion genes from BT-474 and MCF-7 on the cDNA level by RT-PCR. B. Genomic D...
<p>(A) Schematics of the engineered L1 constructs. The L1 5′UTR (gray rectangle), ORF1 (yellow recta...
<p>(A) 5′ RACE was performed on cells transduced with <i>eGFP</i>←D4Z4 lentivirus using primers base...
Numbers of codons in u-ORF are shown above each panel. SD represents the SD sequence (5’-AGGA-3’). U...
Numbers of codons in u-ORF are shown above each panel. SD represents the SD sequence (5’-AGGA-3’). A...
<p>Expression levels from downstream CDS fusions to <i>lacZ</i> that contain an intact 5’-uAUG (CDS)...
<p><b>A</b>. Diagram depicting the in vitro generated L 5′-UTR GFP mRNA reporter constructs with per...
<p>Representations of the <i>nadA</i> (<b>A</b>), <i>farR</i> (<b>B</b>), and <i>mtrR</i> (<b>C</b>)...
<p>The region of the <i>P. chlororaphis</i> 30–84 chromosome that contains the promoter of the phena...
E. coli LJ14 cells harboring plasmids were grown at 28°C to a cell density of ~0.13 as described in ...
Nucleotide sequence and the distance (D and d) between AUG and UAA at the junction regions are indic...
Numbers in square brackets shown above each panel represent the reading frame of d-ORF counting from...
<p>In these primer sets, the forward and reverse primers contain <i>Eco</i>RI and <i>Xho</i>I recogn...
<p><b>A</b>. L 5′-UTR GFP mRNA reporter constructs were generated such that the uORF is fused in fra...
Anscriptional start sites (TSSs). The sequences are represented by solid grey rectangles. Cotranscri...
<p>A. Validation of the fusion genes from BT-474 and MCF-7 on the cDNA level by RT-PCR. B. Genomic D...
<p>(A) Schematics of the engineered L1 constructs. The L1 5′UTR (gray rectangle), ORF1 (yellow recta...
<p>(A) 5′ RACE was performed on cells transduced with <i>eGFP</i>←D4Z4 lentivirus using primers base...