Additional file 1: Table S1. of Essential amino acid ratios and mTOR affect lipogenic gene networks and miRNA expression in bovine mammary epithelial cells

Additional file 2: of DNA methylation patterns in peripheral blood mononuclear cells from Holstein cattle with variable milk yield

Chad Dechow (5849663)
Wan-Sheng Liu (200939)

October 2018

Table S2. Chromosome, start nucleotide, end nucleotide, length, summit, tags, Log P, and fold enrich...

Additional file 2: of Chi-miR-3031 regulates beta-casein via the PI3K/AKT-mTOR signaling pathway in goat mammary epithelial cells (GMECs)

Kaiwen Chen (4246525)
Jinxing Hou (771646)
Yuxuan Song (725984)
Xiaochuan Zhang (6017048)
Yuhan Liu (5745014)
Gonghai Zhang (3376646)
Kai Wen (261662)
Haidong Ma (4246528)
Guang Li (109360)
Binyun Cao (771649)
Xiaopeng An (725985)

November 2018

Figure S1. GO analysis results based on biological process, cellular component and molecular functio...

Additional file 1: of Chi-miR-3031 regulates beta-casein via the PI3K/AKT-mTOR signaling pathway in goat mammary epithelial cells (GMECs)

Kaiwen Chen (4246525)
Jinxing Hou (771646)
Yuxuan Song (725984)
Xiaochuan Zhang (6017048)
Yuhan Liu (5745014)
Gonghai Zhang (3376646)
Kai Wen (261662)
Haidong Ma (4246528)
Guang Li (109360)
Binyun Cao (771649)
Xiaopeng An (725985)

November 2018

Table S1. The up and down-regulated genes in the chi-miR-3031 mimics VS. negative control groups. (X...

Additional file 1: Table S1. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Full list of DE miRNAs target genes. The table contains the Fold change (FC) of each DE miRNA and th...

Additional file 17: Tables S22, S23, S24 and S25. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules correlated with the int...

Additional file 14: Tables S18, S19, S20 and S21. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules negatively correlated w...

Additional file 4: Table S1. of Effect of differentiation on microRNA expression in bovine skeletal muscle satellite cells by deep sequencing

Wei Zhang (405)
Xiao Sun (72808)
Hui Tong (1420336)
Ya Wang (1202)
Shu Li (136154)
Yun Yan (387870)
Guang Li (109360)

July 2016

Top 10 most frequently detected known miRNA in MDSCs. Suppl. Table S2. The 10 most-enriched GO categ...

Additional file 1: Table S1. of Comparative miRNAome analysis revealed different miRNA expression profiles in bovine sera and exosomes

Ke Zhao (248186)
Guanxiang Liang (544712)
Xu Sun (2149102)
Le Guan (621902)

August 2016

Compilation of evaluated reads data in the process of generating miRNAs. (DOCX 70Â kb

Additional file 1 of The LXRB-SREBP1 network regulates lipogenic homeostasis by controlling the synthesis of polyunsaturated fatty acids in goat mammary epithelial cells

Wenying Zhang (118324)
Changhui Zhang (158716)
Jun Luo (120285)
Huifen Xu (2569435)
Jianxin Liu (422013)
Juan J. Loor (7209389)
Hengbo Shi (14068176)

November 2022

Additional file 1: Table S1. Name, accession number, sequences, amplicon length of primer pairs used...

Additional file 1: of Comprehensive analysis of blood cells and plasma identifies tissue-specific miRNAs as potential novel circulating biomarkers in cattle

Jason Ioannidis (3164142)
F. Xavier Donadeu (3164145)

April 2018

Sequencing miRNA analysis. Normalised miRNA expression levels in bovine blood plasma and cell sample...

Additional file 1: of Innate immune responses induced by lipopolysaccharide and lipoteichoic acid in primary goat mammary epithelial cells

Omar Bulgari (3905251)
Xianwen Dong (3905245)
Alfred Roca (3240255)
Anna Caroli (3905248)
Juan Loor (3454145)

April 2017

Additional materials. RNA extraction, purification, and quality assessment; selection of genes, prim...

Additional file 2: Table S2. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...

Additional file 12: Tables S15 and S16. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Full list of all miRNA modules and module membership (MM) values for each miRNA in dataset: modules ...

Additional file 1: of Examination of the xanthosine response on gene expression of mammary epithelial cells using RNA-seq technology

Shanti Choudhary (5514620)
Wenli Li (337819)
Derek Bickhart (275943)
Ramneek Verma (5514626)
R. Sethi (2137225)
C. Mukhopadhyay (5514617)
Ratan Choudhary (5514623)

July 2018

Table S1. List of RT-qPCR primers sequences, product length and their annealing temperatures. Table ...

Additional file 1: of DNA methylation patterns in peripheral blood mononuclear cells from Holstein cattle with variable milk yield

Chad Dechow (5849663)
Wan-Sheng Liu (200939)

October 2018

Table S1. Chromosome, start nucleotide, end nucleotide, length, summit, tags, Log P, and fold enrich...

Additional file 2: of DNA methylation patterns in peripheral blood mononuclear cells from Holstein cattle with variable milk yield

Chad Dechow (5849663)
Wan-Sheng Liu (200939)

October 2018

Table S2. Chromosome, start nucleotide, end nucleotide, length, summit, tags, Log P, and fold enrich...

Additional file 2: of Chi-miR-3031 regulates beta-casein via the PI3K/AKT-mTOR signaling pathway in goat mammary epithelial cells (GMECs)

Kaiwen Chen (4246525)
Jinxing Hou (771646)
Yuxuan Song (725984)
Xiaochuan Zhang (6017048)
Yuhan Liu (5745014)
Gonghai Zhang (3376646)
Kai Wen (261662)
Haidong Ma (4246528)
Guang Li (109360)
Binyun Cao (771649)
Xiaopeng An (725985)

November 2018

Figure S1. GO analysis results based on biological process, cellular component and molecular functio...

Additional file 1: of Chi-miR-3031 regulates beta-casein via the PI3K/AKT-mTOR signaling pathway in goat mammary epithelial cells (GMECs)

Kaiwen Chen (4246525)
Jinxing Hou (771646)
Yuxuan Song (725984)
Xiaochuan Zhang (6017048)
Yuhan Liu (5745014)
Gonghai Zhang (3376646)
Kai Wen (261662)
Haidong Ma (4246528)
Guang Li (109360)
Binyun Cao (771649)
Xiaopeng An (725985)

November 2018

Table S1. The up and down-regulated genes in the chi-miR-3031 mimics VS. negative control groups. (X...

Additional file 1: Table S1. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Full list of DE miRNAs target genes. The table contains the Fold change (FC) of each DE miRNA and th...

Additional file 17: Tables S22, S23, S24 and S25. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules correlated with the int...

Additional file 14: Tables S18, S19, S20 and S21. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Gene ontology (GO) enrichment analysis by Cytoscape of genes in mRNA modules negatively correlated w...

Additional file 4: Table S1. of Effect of differentiation on microRNA expression in bovine skeletal muscle satellite cells by deep sequencing

Wei Zhang (405)
Xiao Sun (72808)
Hui Tong (1420336)
Ya Wang (1202)
Shu Li (136154)
Yun Yan (387870)
Guang Li (109360)

July 2016

Top 10 most frequently detected known miRNA in MDSCs. Suppl. Table S2. The 10 most-enriched GO categ...

Additional file 1: Table S1. of Comparative miRNAome analysis revealed different miRNA expression profiles in bovine sera and exosomes

Ke Zhao (248186)
Guanxiang Liang (544712)
Xu Sun (2149102)
Le Guan (621902)

August 2016

Compilation of evaluated reads data in the process of generating miRNAs. (DOCX 70Â kb

Additional file 1 of The LXRB-SREBP1 network regulates lipogenic homeostasis by controlling the synthesis of polyunsaturated fatty acids in goat mammary epithelial cells

Wenying Zhang (118324)
Changhui Zhang (158716)
Jun Luo (120285)
Huifen Xu (2569435)
Jianxin Liu (422013)
Juan J. Loor (7209389)
Hengbo Shi (14068176)

November 2022

Additional file 1: Table S1. Name, accession number, sequences, amplicon length of primer pairs used...

Additional file 1: of Comprehensive analysis of blood cells and plasma identifies tissue-specific miRNAs as potential novel circulating biomarkers in cattle

Jason Ioannidis (3164142)
F. Xavier Donadeu (3164145)

April 2018

Sequencing miRNA analysis. Normalised miRNA expression levels in bovine blood plasma and cell sample...

Additional file 1: of Innate immune responses induced by lipopolysaccharide and lipoteichoic acid in primary goat mammary epithelial cells

Omar Bulgari (3905251)
Xianwen Dong (3905245)
Alfred Roca (3240255)
Anna Caroli (3905248)
Juan Loor (3454145)

April 2017

Additional materials. RNA extraction, purification, and quality assessment; selection of genes, prim...

Additional file 2: Table S2. of Functional development of the adult ovine mammary glandâinsights from gene expression profiling

Amy Paten (3474197)
Elizabeth Duncan (810980)
Sarah Pain (3474200)
Sam Peterson (3474194)
Paul Kenyon (3474206)
Hugh Blair (3474203)
Peter Dearden (65392)

October 2015

RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes...

Additional file 12: Tables S15 and S16. of Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle

Gabriella Oliveira (4837605)
Luciana Regitano (3407810)
Aline Cesar (3508628)
James Reecy (3561878)
Karina Degaki (4837602)
Mirele Poleti (3583997)
Andrezza Felício (3584003)
James Koltes (3570086)
Luiz Coutinho (3508640)

February 2018

Full list of all miRNA modules and module membership (MM) values for each miRNA in dataset: modules ...

Additional file 1: of Examination of the xanthosine response on gene expression of mammary epithelial cells using RNA-seq technology

Shanti Choudhary (5514620)
Wenli Li (337819)
Derek Bickhart (275943)
Ramneek Verma (5514626)
R. Sethi (2137225)
C. Mukhopadhyay (5514617)
Ratan Choudhary (5514623)

July 2018

Table S1. List of RT-qPCR primers sequences, product length and their annealing temperatures. Table ...

Additional file 1: of DNA methylation patterns in peripheral blood mononuclear cells from Holstein cattle with variable milk yield

Chad Dechow (5849663)
Wan-Sheng Liu (200939)

October 2018

Table S1. Chromosome, start nucleotide, end nucleotide, length, summit, tags, Log P, and fold enrich...

Additional file 2: of DNA methylation patterns in peripheral blood mononuclear cells from Holstein cattle with variable milk yield

Chad Dechow (5849663)
Wan-Sheng Liu (200939)

October 2018

Table S2. Chromosome, start nucleotide, end nucleotide, length, summit, tags, Log P, and fold enrich...

Additional file 2: of Chi-miR-3031 regulates beta-casein via the PI3K/AKT-mTOR signaling pathway in goat mammary epithelial cells (GMECs)

Kaiwen Chen (4246525)
Jinxing Hou (771646)
Yuxuan Song (725984)
Xiaochuan Zhang (6017048)
Yuhan Liu (5745014)
Gonghai Zhang (3376646)
Kai Wen (261662)
Haidong Ma (4246528)
Guang Li (109360)
Binyun Cao (771649)
Xiaopeng An (725985)

November 2018

Figure S1. GO analysis results based on biological process, cellular component and molecular functio...

Additional file 1: of Chi-miR-3031 regulates beta-casein via the PI3K/AKT-mTOR signaling pathway in goat mammary epithelial cells (GMECs)

Kaiwen Chen (4246525)
Jinxing Hou (771646)
Yuxuan Song (725984)
Xiaochuan Zhang (6017048)
Yuhan Liu (5745014)
Gonghai Zhang (3376646)
Kai Wen (261662)
Haidong Ma (4246528)
Guang Li (109360)
Binyun Cao (771649)
Xiaopeng An (725985)

November 2018

Table S1. The up and down-regulated genes in the chi-miR-3031 mimics VS. negative control groups. (X...

Additional file 1: Table S1. of Essential amino acid ratios and mTOR affect lipogenic gene networks and miRNA expression in bovine mammary epithelial cells

Abstract

Extracted data

Additional file 1: Table S1. of Essential amino acid ratios and mTOR affect lipogenic gene networks and miRNA expression in bovine mammary epithelial cells

Abstract

Extracted data

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