Additional file 3: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Additional file 1: of Community characteristics of the gut microbiomes of competitive cyclists

Lauren Petersen (4349455)
Eddy Bautista (4349467)
Hoan Nguyen (4349461)
Blake Hanson (4349458)
Lei Chen (54296)
Sai Lek (4349464)
Erica Sodergren (48852)
George Weinstock (26435)

August 2017

Table showing the average read depths for mWGS sequencing, 16S rRNA gene sequencing, and RNA-Seq. (X...

Additional file 3: of Marker genes as predictors of shared genomic function

Joseph Sevigny (6557141)
Derek Rothenheber (6557144)
Krystalle Diaz (6557147)
Ying Zhang (40767)
Kristin Agustsson (6557150)
R. Bergeron (6557153)
W. Thomas (6557156)

April 2019

Table S3. A list showing the ratio of shared genes for each bacterial genome comparison. Data is inc...

Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Estaki, Mehrbod
Pither, Jason
Baumeister, Peter
Little, Jonathan P
Gill, Sandeep K
Ghosh, Sanjoy
Ahmadi-Vand, Zahra
Marsden, Katelyn R
Gibson, Deanna L

August 2016

Background: Reduced microbial diversity in human intestines has been implicated in ...

Additional file 9: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Mehrbod Estaki (284755)
Jason Pither (3274305)
Peter Baumeister (260277)
Jonathan Little (3455462)
Sandeep Gill (3455456)
Sanjoy Ghosh (284750)
Zahra Ahmadi-Vand (781456)
Katelyn Marsden (3455459)
Deanna Gibson (3455465)

August 2016

Ordination of predicted metagenomic functions data. PCA plot of centered functional category abundan...

Additional file 7: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Mehrbod Estaki (284755)
Jason Pither (3274305)
Peter Baumeister (260277)
Jonathan Little (3455462)
Sandeep Gill (3455456)
Sanjoy Ghosh (284750)
Zahra Ahmadi-Vand (781456)
Katelyn Marsden (3455459)
Deanna Gibson (3455465)

August 2016

Beta diversity amongst fitness groups. Three dimensional PCoA plots of genus abundance data transfor...

Additional file 4: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Mehrbod Estaki (284755)
Jason Pither (3274305)
Peter Baumeister (260277)
Jonathan Little (3455462)
Sandeep Gill (3455456)
Sanjoy Ghosh (284750)
Zahra Ahmadi-Vand (781456)
Katelyn Marsden (3455459)
Deanna Gibson (3455465)

August 2016

Predictor variables included in the RDA models. A manual pre-screening of dietary variables based on...

Additional file 1: of Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study

Martin Mortensen (3465659)
Betina Hebbelstrup Jensen (6114572)
Jeanne Williams (3994580)
Asker Brejnrod (3465656)
Lee O’Brien Andersen (6114575)
Dennis Röser (6114578)
Bente Andreassen (6114581)
Andreas Petersen (433641)
Christen Stensvold (4265683)
Søren Sørensen (222728)
Karen Krogfelt (3419096)

December 2018

Figure S1. Rarefaction analysis of the species richness. Rarefaction curves showed a trend of an inc...

Additional file 8: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Mehrbod Estaki (284755)
Jason Pither (3274305)
Peter Baumeister (260277)
Jonathan Little (3455462)
Sandeep Gill (3455456)
Sanjoy Ghosh (284750)
Zahra Ahmadi-Vand (781456)
Katelyn Marsden (3455459)
Deanna Gibson (3455465)

August 2016

Optimal clustering selection of bacterial data. The number of optimal clustering of all data was det...

Additional file 2: of Moderate-intensity aerobic and resistance exercise is safe and favorably influences body composition in patients with quiescent Inflammatory Bowel Disease: a randomized controlled cross-over trial

Owen Cronin (6329231)
Wiley Barton (6329234)
Carthage Moran (6329237)
Donal Sheehan (5696432)
Ronan Whiston (6329240)
Helena Nugent (6329243)
Yvonne McCarthy (109070)
Catherine Molloy (6329246)
Orla OâSullivan (3406223)
Paul Cotter (802473)
Michael Molloy (6329249)
Fergus Shanahan (297960)

February 2019

Figure S1. Î˛-diversity of taxonomic profiles. A & B: Non-metric multidimensional scaling (NMDS) of ...

Additional file 7: of A metagenome-wide association study of gut microbiota in asthma in UK adults

Qi Wang (22418)
Fei Li (143236)
Bishan Liang (633594)
Yuhu Liang (5744372)
Sijie Chen (1622476)
Xiaodong Mo (5744378)
Yanmei Ju (5744381)
Hui Zhao (7395)
Huijue Jia (4889923)
Timothy Spector (348486)
Hailiang Xie (5744384)
Ruijin Guo (5744390)

September 2018

Figure S4. Reduced gut microbial richness in only one twin sample. (a-f) Richness and alpha-diversit...

Additional file 4: of Heritable components of the human fecal microbiome are associated with visceral fat

Michelle Beaumont (779428)
Julia Goodrich (3454907)
Matthew Jackson (2553886)
Idil Yet (2609974)
Emily Davenport (3454901)
Sara Vieira-Silva (185473)
Justine Debelius (3501431)
Tess Pallister (779429)
Massimo Mangino (87550)
Jeroen Raes (6041)
Rob Knight (11635)
Andrew Clark (377028)
Ruth Ley (3454904)
Tim Spector (153290)
Jordana Bell (667256)

September 2016

Comparison of alpha diversity and human adiposity phenotypes. Alpha diversity is measured using the ...

Additional file 1: of Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers

Zhenwei Dai (5090993)
Olabisi Coker (5090996)
Geicho Nakatsu (5090990)
William Wu (271535)
Liuyang Zhao (318320)
Zigui Chen (153298)
Francis Chan (221848)
Karsten Kristiansen (175581)
Joseph Sung (5090999)
Sunny Wong (3578861)
Jun Yu (5904)

April 2018

Figure S1. (A) Shannon diversities of control and CRC samples in each cohort. (B) Combining the norm...

Additional file 2: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

Frédéric Raymond (51256)
Maurice Boissinot (59036)
Amin Ouameur (6561317)
Maxime Déraspe (3480068)
Pier-Luc Plante (604214)
Sewagnouin Kpanou (6561320)
Ève Bérubé (6561323)
Ann Huletsky (2418028)
Paul Roy (6561326)
Marc Ouellette (51263)
Michel Bergeron (6561329)
Jacques Corbeil (51262)

April 2019

Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...

Additional file 2: of Estimating bacteria diversity in different organs of nine species of mosquito by next generation sequencing

M Mancini (5821076)
C Damiani (5821079)
A Accoti (5821082)
M Tallarita (5821085)
E Nunzi (5821088)
A Cappelli (5821091)
J Bozic (5821094)
R Catanzani (5821097)
P Rossi (5821100)
M Valzano (5821103)
A Serrao (5821106)
I Ricci (5821109)
R Spaccapelo (5821112)
G Favia (5821115)

October 2018

Figure S2. Rarefaction curves. Rarefaction curves calculated for each sample based on the OTU comput...

Additional file 3: of Moderate-intensity aerobic and resistance exercise is safe and favorably influences body composition in patients with quiescent Inflammatory Bowel Disease: a randomized controlled cross-over trial

Owen Cronin (6329231)
Wiley Barton (6329234)
Carthage Moran (6329237)
Donal Sheehan (5696432)
Ronan Whiston (6329240)
Helena Nugent (6329243)
Yvonne McCarthy (109070)
Catherine Molloy (6329246)
Orla OâSullivan (3406223)
Paul Cotter (802473)
Michael Molloy (6329249)
Fergus Shanahan (297960)

February 2019

Figure S2. Îą-diversity of metabolic pathways. A to D: Shannon Îą-diversity H-index of general and s...

Additional file 1: of Community characteristics of the gut microbiomes of competitive cyclists

Lauren Petersen (4349455)
Eddy Bautista (4349467)
Hoan Nguyen (4349461)
Blake Hanson (4349458)
Lei Chen (54296)
Sai Lek (4349464)
Erica Sodergren (48852)
George Weinstock (26435)

August 2017

Table showing the average read depths for mWGS sequencing, 16S rRNA gene sequencing, and RNA-Seq. (X...

Additional file 3: of Marker genes as predictors of shared genomic function

Joseph Sevigny (6557141)
Derek Rothenheber (6557144)
Krystalle Diaz (6557147)
Ying Zhang (40767)
Kristin Agustsson (6557150)
R. Bergeron (6557153)
W. Thomas (6557156)

April 2019

Table S3. A list showing the ratio of shared genes for each bacterial genome comparison. Data is inc...

Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Estaki, Mehrbod
Pither, Jason
Baumeister, Peter
Little, Jonathan P
Gill, Sandeep K
Ghosh, Sanjoy
Ahmadi-Vand, Zahra
Marsden, Katelyn R
Gibson, Deanna L

August 2016

Background: Reduced microbial diversity in human intestines has been implicated in ...

Additional file 9: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Mehrbod Estaki (284755)
Jason Pither (3274305)
Peter Baumeister (260277)
Jonathan Little (3455462)
Sandeep Gill (3455456)
Sanjoy Ghosh (284750)
Zahra Ahmadi-Vand (781456)
Katelyn Marsden (3455459)
Deanna Gibson (3455465)

August 2016

Ordination of predicted metagenomic functions data. PCA plot of centered functional category abundan...

Additional file 7: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Mehrbod Estaki (284755)
Jason Pither (3274305)
Peter Baumeister (260277)
Jonathan Little (3455462)
Sandeep Gill (3455456)
Sanjoy Ghosh (284750)
Zahra Ahmadi-Vand (781456)
Katelyn Marsden (3455459)
Deanna Gibson (3455465)

August 2016

Beta diversity amongst fitness groups. Three dimensional PCoA plots of genus abundance data transfor...

Additional file 4: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Mehrbod Estaki (284755)
Jason Pither (3274305)
Peter Baumeister (260277)
Jonathan Little (3455462)
Sandeep Gill (3455456)
Sanjoy Ghosh (284750)
Zahra Ahmadi-Vand (781456)
Katelyn Marsden (3455459)
Deanna Gibson (3455465)

August 2016

Predictor variables included in the RDA models. A manual pre-screening of dietary variables based on...

Additional file 1: of Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study

Martin Mortensen (3465659)
Betina Hebbelstrup Jensen (6114572)
Jeanne Williams (3994580)
Asker Brejnrod (3465656)
Lee O’Brien Andersen (6114575)
Dennis Röser (6114578)
Bente Andreassen (6114581)
Andreas Petersen (433641)
Christen Stensvold (4265683)
Søren Sørensen (222728)
Karen Krogfelt (3419096)

December 2018

Figure S1. Rarefaction analysis of the species richness. Rarefaction curves showed a trend of an inc...

Additional file 8: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Mehrbod Estaki (284755)
Jason Pither (3274305)
Peter Baumeister (260277)
Jonathan Little (3455462)
Sandeep Gill (3455456)
Sanjoy Ghosh (284750)
Zahra Ahmadi-Vand (781456)
Katelyn Marsden (3455459)
Deanna Gibson (3455465)

August 2016

Optimal clustering selection of bacterial data. The number of optimal clustering of all data was det...

Additional file 2: of Moderate-intensity aerobic and resistance exercise is safe and favorably influences body composition in patients with quiescent Inflammatory Bowel Disease: a randomized controlled cross-over trial

Owen Cronin (6329231)
Wiley Barton (6329234)
Carthage Moran (6329237)
Donal Sheehan (5696432)
Ronan Whiston (6329240)
Helena Nugent (6329243)
Yvonne McCarthy (109070)
Catherine Molloy (6329246)
Orla OâSullivan (3406223)
Paul Cotter (802473)
Michael Molloy (6329249)
Fergus Shanahan (297960)

February 2019

Figure S1. Î˛-diversity of taxonomic profiles. A & B: Non-metric multidimensional scaling (NMDS) of ...

Additional file 7: of A metagenome-wide association study of gut microbiota in asthma in UK adults

Qi Wang (22418)
Fei Li (143236)
Bishan Liang (633594)
Yuhu Liang (5744372)
Sijie Chen (1622476)
Xiaodong Mo (5744378)
Yanmei Ju (5744381)
Hui Zhao (7395)
Huijue Jia (4889923)
Timothy Spector (348486)
Hailiang Xie (5744384)
Ruijin Guo (5744390)

September 2018

Figure S4. Reduced gut microbial richness in only one twin sample. (a-f) Richness and alpha-diversit...

Additional file 4: of Heritable components of the human fecal microbiome are associated with visceral fat

Michelle Beaumont (779428)
Julia Goodrich (3454907)
Matthew Jackson (2553886)
Idil Yet (2609974)
Emily Davenport (3454901)
Sara Vieira-Silva (185473)
Justine Debelius (3501431)
Tess Pallister (779429)
Massimo Mangino (87550)
Jeroen Raes (6041)
Rob Knight (11635)
Andrew Clark (377028)
Ruth Ley (3454904)
Tim Spector (153290)
Jordana Bell (667256)

September 2016

Comparison of alpha diversity and human adiposity phenotypes. Alpha diversity is measured using the ...

Additional file 1: of Multi-cohort analysis of colorectal cancer metagenome identified altered bacteria across populations and universal bacterial markers

Zhenwei Dai (5090993)
Olabisi Coker (5090996)
Geicho Nakatsu (5090990)
William Wu (271535)
Liuyang Zhao (318320)
Zigui Chen (153298)
Francis Chan (221848)
Karsten Kristiansen (175581)
Joseph Sung (5090999)
Sunny Wong (3578861)
Jun Yu (5904)

April 2018

Figure S1. (A) Shannon diversities of control and CRC samples in each cohort. (B) Combining the norm...

Additional file 2: of Culture-enriched human gut microbiomes reveal core and accessory resistance genes

Frédéric Raymond (51256)
Maurice Boissinot (59036)
Amin Ouameur (6561317)
Maxime Déraspe (3480068)
Pier-Luc Plante (604214)
Sewagnouin Kpanou (6561320)
Ève Bérubé (6561323)
Ann Huletsky (2418028)
Paul Roy (6561326)
Marc Ouellette (51263)
Michel Bergeron (6561329)
Jacques Corbeil (51262)

April 2019

Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...

Additional file 2: of Estimating bacteria diversity in different organs of nine species of mosquito by next generation sequencing

M Mancini (5821076)
C Damiani (5821079)
A Accoti (5821082)
M Tallarita (5821085)
E Nunzi (5821088)
A Cappelli (5821091)
J Bozic (5821094)
R Catanzani (5821097)
P Rossi (5821100)
M Valzano (5821103)
A Serrao (5821106)
I Ricci (5821109)
R Spaccapelo (5821112)
G Favia (5821115)

October 2018

Figure S2. Rarefaction curves. Rarefaction curves calculated for each sample based on the OTU comput...

Additional file 3: of Moderate-intensity aerobic and resistance exercise is safe and favorably influences body composition in patients with quiescent Inflammatory Bowel Disease: a randomized controlled cross-over trial

Owen Cronin (6329231)
Wiley Barton (6329234)
Carthage Moran (6329237)
Donal Sheehan (5696432)
Ronan Whiston (6329240)
Helena Nugent (6329243)
Yvonne McCarthy (109070)
Catherine Molloy (6329246)
Orla OâSullivan (3406223)
Paul Cotter (802473)
Michael Molloy (6329249)
Fergus Shanahan (297960)

February 2019

Figure S2. Îą-diversity of metabolic pathways. A to D: Shannon Îą-diversity H-index of general and s...

Additional file 1: of Community characteristics of the gut microbiomes of competitive cyclists

Lauren Petersen (4349455)
Eddy Bautista (4349467)
Hoan Nguyen (4349461)
Blake Hanson (4349458)
Lei Chen (54296)
Sai Lek (4349464)
Erica Sodergren (48852)
George Weinstock (26435)

August 2017

Table showing the average read depths for mWGS sequencing, 16S rRNA gene sequencing, and RNA-Seq. (X...

Additional file 3: of Marker genes as predictors of shared genomic function

Joseph Sevigny (6557141)
Derek Rothenheber (6557144)
Krystalle Diaz (6557147)
Ying Zhang (40767)
Kristin Agustsson (6557150)
R. Bergeron (6557153)
W. Thomas (6557156)

April 2019

Table S3. A list showing the ratio of shared genes for each bacterial genome comparison. Data is inc...

Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Estaki, Mehrbod
Pither, Jason
Baumeister, Peter
Little, Jonathan P
Gill, Sandeep K
Ghosh, Sanjoy
Ahmadi-Vand, Zahra
Marsden, Katelyn R
Gibson, Deanna L

August 2016

Background: Reduced microbial diversity in human intestines has been implicated in ...

Additional file 3: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Abstract

Extracted data

Additional file 3: of Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions

Abstract

Extracted data

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