<p>Accuracy of GBS SNP data derived from Illumina platform using different bioinformatics pipeline.</p
Current microarray technologies are able to assay thousands of samples over million of SNPs simultan...
<p>Mean number of SNPs per sample obtained for different types of DNA preparations and bioinformatic...
<p>Except the two libraries, SRR090701 and SRR017680, all libraries are PE reads.</p>†<p>The informa...
<p>Accuracy of SNP data derived using Ion Torrent reads and two different bioinformatics pipelines</...
<p>* Includes both genotypes originally called by GBS and following imputation</p><p>** 301soybean l...
<p>Call rate refers to the percentage of called genotypes while the accuracy is computed as the numb...
<p>Columns report: library/lane identity (population A or B, estimation of sequencing depth per indi...
<p>The Illumina data are first processed to remove low quality reads. The reference sequences are ge...
<p>SNP data from a SNP array (SoySNP50K) or whole-genome resequencing (WGS) were used as a reference...
SNP calls in HapMap format with basic filtering on missingness and allele frequency for 95 Junco sam...
(A) The proportion of reads from single-species libraries that were incorrectly mapped to the wrong ...
<p>Plots comparing SNP genotyping algorithms for each microarray platform are tested. The vertical a...
<p>The paternal and maternal genomes differes in 1% SNPs. The mean insert size is 250bp with 25bp st...
<p>The prediction accuracy of the identified gene combinations on TCGA microarray data.</p
<p>% indicates the percentage of genes and nucleotides predicted exactly. There were no SN or SP val...
Current microarray technologies are able to assay thousands of samples over million of SNPs simultan...
<p>Mean number of SNPs per sample obtained for different types of DNA preparations and bioinformatic...
<p>Except the two libraries, SRR090701 and SRR017680, all libraries are PE reads.</p>†<p>The informa...
<p>Accuracy of SNP data derived using Ion Torrent reads and two different bioinformatics pipelines</...
<p>* Includes both genotypes originally called by GBS and following imputation</p><p>** 301soybean l...
<p>Call rate refers to the percentage of called genotypes while the accuracy is computed as the numb...
<p>Columns report: library/lane identity (population A or B, estimation of sequencing depth per indi...
<p>The Illumina data are first processed to remove low quality reads. The reference sequences are ge...
<p>SNP data from a SNP array (SoySNP50K) or whole-genome resequencing (WGS) were used as a reference...
SNP calls in HapMap format with basic filtering on missingness and allele frequency for 95 Junco sam...
(A) The proportion of reads from single-species libraries that were incorrectly mapped to the wrong ...
<p>Plots comparing SNP genotyping algorithms for each microarray platform are tested. The vertical a...
<p>The paternal and maternal genomes differes in 1% SNPs. The mean insert size is 250bp with 25bp st...
<p>The prediction accuracy of the identified gene combinations on TCGA microarray data.</p
<p>% indicates the percentage of genes and nucleotides predicted exactly. There were no SN or SP val...
Current microarray technologies are able to assay thousands of samples over million of SNPs simultan...
<p>Mean number of SNPs per sample obtained for different types of DNA preparations and bioinformatic...
<p>Except the two libraries, SRR090701 and SRR017680, all libraries are PE reads.</p>†<p>The informa...
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