Additional file 7: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

Open link

Publication date

August 2016

DOI

10.6084/m9.figshare.c.3596228_d15.v1

Abstract

Figure S4. Box plot of genetic diversity for each subgroup at different K values (2, 3, 4, and 6). (PDF 170 kb

Extracted data

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Additional file 7: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

Open link

Publication date

August 2016

DOI

10.6084/m9.figshare.c.3596228_d15.v1

Abstract

Figure S4. Box plot of genetic diversity for each subgroup at different K values (2, 3, 4, and 6). (PDF 170 kb

Extracted data

Sandra Unterseer (2823935)
Saurabh Pophaly (3519638)
Regina Peis (3519632)
Peter Westermeier (3519635)
Manfred Mayer (3319896)
Michael Seidel (715355)
Georg Haberer (15852)
Klaus Mayer (57567)
Bernardo Ordas (3519629)
Hubert Pausch (151770)
Aurélien Tellier (150142)
Eva Bauer (167407)
Chris-Carolin Schön (193958)

July 2016

Gene-wise nucleotide diversity π and F ST for flowering time candidate genes with at least 5 SNPs in...

Additional file 1: of Analysis of genetic differentiation and genomic variation to reveal potential regions of importance during maize improvement

Xun Wu (382798)
Yongxiang Li (116212)
Xin Li (51274)
Chunhui Li (501186)
Yunsu Shi (711297)
Yanchun Song (711298)
Zuping Zheng (3528419)
Yu Li (183836)
Tianyu Wang (397547)

October 2015

Figure S1. Correlation analysis of the first five principal components (PCs) between specific subset...

Additional file 2: Figure S1. of A comprehensive study of the genomic differentiation between temperate Dent and Flint maize

Sandra Unterseer (2823935)
Saurabh Pophaly (3519638)
Regina Peis (3519632)
Peter Westermeier (3519635)
Manfred Mayer (3319896)
Michael Seidel (715355)
Georg Haberer (15852)
Klaus Mayer (57567)
Bernardo Ordas (3519629)
Hubert Pausch (151770)
AurĂŠlien Tellier (3519704)
Eva Bauer (167407)
Chris-Carolin SchĂśn (3519707)

July 2016

Metrics of the selection screens for 136 temperate inbred lines along the ten maize chromosomes base...

Additional file 4: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Figure S2. PCA plot for the Temperate group at different K values according to the result of STRUCTU...

Additional file 9: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Figure S5. Distribution of variant SNPs and the ratio of variant SNPs/total SNPs in Chr 1, 3, 5, 6, ...

Additional file 12: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Table S6. Ten pairs of inbred lines with the lowest pairwise similarity ratios among the entire pane...

Additional file 6: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Table S3. Pairwise kinship matrix of the entire population calculated by VanRaden algorithm. (XLSX 1...

Additional file 15: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Table S9. Ten inbred line pairs with the highest kinship coefficient among the entire panel. (DOCX 1...

Additional file 14: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Table S8. Comparison of GD in different studies. MICN is an abbreviation of Modified introduction in...

Additional file 7: of Genetic characterization of inbred lines from Shaan A and B groups for identifying loci associated with maize grain yield

Ting Li (117885)
Jianzhou Qu (3190362)
Yahui Wang (1305345)
Liguo Chang (5681840)
Kunhui He (5681843)
Dongwei Guo (3190368)
Xinghua Zhang (457188)
Shutu Xu (164868)
Jiquan Xue (3190359)

August 2018

Figure S2. Frequency map of grain yield measured in the samples from Yangling (a) and Yulin (b). (PD...

Additional file 7: of Global status of 47 major wheat loci controlling yield, quality, adaptation and stress resistance selected over the last century

Junjie Zhao (476897)
Zhiwei Wang (120259)
Hongxia Liu (1544371)
Jing Zhao (21160)
Tian Li (194773)
Jian Hou (93442)
Xueyong Zhang (129114)
Chenyang Hao (129091)

January 2019

Figure S6. Genetic diversity and population differentiation of Chinese landraces (CL) and modern Chi...

Additional file 4: of Genetic characterization of inbred lines from Shaan A and B groups for identifying loci associated with maize grain yield

Ting Li (117885)
Jianzhou Qu (3190362)
Yahui Wang (1305345)
Liguo Chang (5681840)
Kunhui He (5681843)
Dongwei Guo (3190368)
Xinghua Zhang (457188)
Shutu Xu (164868)
Jiquan Xue (3190359)

August 2018

Table S3. Pairwise kinship coefficients between AM126 lines calculated with 46,046 SNPs. (XLSX 57 kb

Additional file 4: of Genetic variation and population structure of maize inbred lines adapted to the mid-altitude sub-humid maize agro-ecology of Ethiopia using single nucleotide polymorphic (SNP) markers

Berhanu Ertiro (3548366)
Kassa Semagn (2935962)
Biswanath Das (1406314)
Michael Olsen (582064)
Maryke Labuschagne (3548357)
Mosisa Worku (3548360)
Dagne Wegary (4511074)
Girum Azmach (4511080)
Veronica Ogugo (3548363)
Tolera Keno (4511083)
Beyene Abebe (4511077)
Temesgen Chibsa (4511071)
Abebe Menkir (4511086)

October 2017

Heat map of the 265 inbred lines based on relative kinship matrix estimated from 220,878 polymorphic...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 5: of Genetic characterization of inbred lines from Shaan A and B groups for identifying loci associated with maize grain yield

Ting Li (117885)
Jianzhou Qu (3190362)
Yahui Wang (1305345)
Liguo Chang (5681840)
Kunhui He (5681843)
Dongwei Guo (3190368)
Xinghua Zhang (457188)
Shutu Xu (164868)
Jiquan Xue (3190359)

August 2018

Figure S1. Heatmap of AM126 based on the kinship matrix computed using 46,046 SNPs. (PDF 135 kb

Additional file 6: Table S8. of A comprehensive study of the genomic differentiation between temperate Dent and Flint maize

Sandra Unterseer (2823935)
Saurabh Pophaly (3519638)
Regina Peis (3519632)
Peter Westermeier (3519635)
Manfred Mayer (3319896)
Michael Seidel (715355)
Georg Haberer (15852)
Klaus Mayer (57567)
Bernardo Ordas (3519629)
Hubert Pausch (151770)
Aurélien Tellier (150142)
Eva Bauer (167407)
Chris-Carolin Schön (193958)

July 2016

Gene-wise nucleotide diversity π and F ST for flowering time candidate genes with at least 5 SNPs in...

Additional file 1: of Analysis of genetic differentiation and genomic variation to reveal potential regions of importance during maize improvement

Xun Wu (382798)
Yongxiang Li (116212)
Xin Li (51274)
Chunhui Li (501186)
Yunsu Shi (711297)
Yanchun Song (711298)
Zuping Zheng (3528419)
Yu Li (183836)
Tianyu Wang (397547)

October 2015

Figure S1. Correlation analysis of the first five principal components (PCs) between specific subset...

Additional file 2: Figure S1. of A comprehensive study of the genomic differentiation between temperate Dent and Flint maize

Sandra Unterseer (2823935)
Saurabh Pophaly (3519638)
Regina Peis (3519632)
Peter Westermeier (3519635)
Manfred Mayer (3319896)
Michael Seidel (715355)
Georg Haberer (15852)
Klaus Mayer (57567)
Bernardo Ordas (3519629)
Hubert Pausch (151770)
AurĂŠlien Tellier (3519704)
Eva Bauer (167407)
Chris-Carolin SchĂśn (3519707)

July 2016

Metrics of the selection screens for 136 temperate inbred lines along the ten maize chromosomes base...

Additional file 4: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Figure S2. PCA plot for the Temperate group at different K values according to the result of STRUCTU...

Additional file 9: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Figure S5. Distribution of variant SNPs and the ratio of variant SNPs/total SNPs in Chr 1, 3, 5, 6, ...

Additional file 12: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Table S6. Ten pairs of inbred lines with the lowest pairwise similarity ratios among the entire pane...

Additional file 6: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Table S3. Pairwise kinship matrix of the entire population calculated by VanRaden algorithm. (XLSX 1...

Additional file 15: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Table S9. Ten inbred line pairs with the highest kinship coefficient among the entire panel. (DOCX 1...

Additional file 14: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Xiao Zhang (152326)
Hua Zhang (12549)
Lujiang Li (3400964)
Hai Lan (561378)
Zhiyong Ren (2017543)
Dan Liu (108669)
Ling Wu (151826)
Hailan Liu (176549)
Jennifer Jaqueth (839067)
Bailin Li (162934)
Guangtang Pan (176561)
Shibin Gao (164894)

August 2016

Table S8. Comparison of GD in different studies. MICN is an abbreviation of Modified introduction in...

Additional file 7: of Genetic characterization of inbred lines from Shaan A and B groups for identifying loci associated with maize grain yield

Ting Li (117885)
Jianzhou Qu (3190362)
Yahui Wang (1305345)
Liguo Chang (5681840)
Kunhui He (5681843)
Dongwei Guo (3190368)
Xinghua Zhang (457188)
Shutu Xu (164868)
Jiquan Xue (3190359)

August 2018

Figure S2. Frequency map of grain yield measured in the samples from Yangling (a) and Yulin (b). (PD...

Additional file 7: of Global status of 47 major wheat loci controlling yield, quality, adaptation and stress resistance selected over the last century

Junjie Zhao (476897)
Zhiwei Wang (120259)
Hongxia Liu (1544371)
Jing Zhao (21160)
Tian Li (194773)
Jian Hou (93442)
Xueyong Zhang (129114)
Chenyang Hao (129091)

January 2019

Figure S6. Genetic diversity and population differentiation of Chinese landraces (CL) and modern Chi...

Additional file 4: of Genetic characterization of inbred lines from Shaan A and B groups for identifying loci associated with maize grain yield

Ting Li (117885)
Jianzhou Qu (3190362)
Yahui Wang (1305345)
Liguo Chang (5681840)
Kunhui He (5681843)
Dongwei Guo (3190368)
Xinghua Zhang (457188)
Shutu Xu (164868)
Jiquan Xue (3190359)

August 2018

Table S3. Pairwise kinship coefficients between AM126 lines calculated with 46,046 SNPs. (XLSX 57 kb

Berhanu Ertiro (3548366)
Kassa Semagn (2935962)
Biswanath Das (1406314)
Michael Olsen (582064)
Maryke Labuschagne (3548357)
Mosisa Worku (3548360)
Dagne Wegary (4511074)
Girum Azmach (4511080)
Veronica Ogugo (3548363)
Tolera Keno (4511083)
Beyene Abebe (4511077)
Temesgen Chibsa (4511071)
Abebe Menkir (4511086)

October 2017

Heat map of the 265 inbred lines based on relative kinship matrix estimated from 220,878 polymorphic...

Additional file 4: of Genome-wide association analysis of stalk biomass and anatomical traits in maize

Mona Mazaheri (3995609)
Marlies Heckwolf (3995618)
Brieanne Vaillancourt (108028)
Joseph Gage (3879919)
Brett Burdo (6286337)
Sven Heckwolf (6286340)
Kerrie Barry (276529)
Anna Lipzen (194340)
Camila Ribeiro (6286343)
Thomas Kono (448008)
Heidi Kaeppler (3995606)
Edgar Spalding (3879922)
Candice Hirsch (6286346)
C. Robin Buell (108039)
Natalia Leon (3995600)
Shawn Kaeppler (524084)

February 2019

LD plots of genomic regions containing significant SNPs and adjacent candidate genes. Significant SN...

Additional file 5: of Genetic characterization of inbred lines from Shaan A and B groups for identifying loci associated with maize grain yield

Ting Li (117885)
Jianzhou Qu (3190362)
Yahui Wang (1305345)
Liguo Chang (5681840)
Kunhui He (5681843)
Dongwei Guo (3190368)
Xinghua Zhang (457188)
Shutu Xu (164868)
Jiquan Xue (3190359)

August 2018

Figure S1. Heatmap of AM126 based on the kinship matrix computed using 46,046 SNPs. (PDF 135 kb

Additional file 6: Table S8. of A comprehensive study of the genomic differentiation between temperate Dent and Flint maize

Sandra Unterseer (2823935)
Saurabh Pophaly (3519638)
Regina Peis (3519632)
Peter Westermeier (3519635)
Manfred Mayer (3319896)
Michael Seidel (715355)
Georg Haberer (15852)
Klaus Mayer (57567)
Bernardo Ordas (3519629)
Hubert Pausch (151770)
Aurélien Tellier (150142)
Eva Bauer (167407)
Chris-Carolin Schön (193958)

July 2016

Gene-wise nucleotide diversity π and F ST for flowering time candidate genes with at least 5 SNPs in...

Additional file 1: of Analysis of genetic differentiation and genomic variation to reveal potential regions of importance during maize improvement

Xun Wu (382798)
Yongxiang Li (116212)
Xin Li (51274)
Chunhui Li (501186)
Yunsu Shi (711297)
Yanchun Song (711298)
Zuping Zheng (3528419)
Yu Li (183836)
Tianyu Wang (397547)

October 2015

Figure S1. Correlation analysis of the first five principal components (PCs) between specific subset...

Additional file 2: Figure S1. of A comprehensive study of the genomic differentiation between temperate Dent and Flint maize

Sandra Unterseer (2823935)
Saurabh Pophaly (3519638)
Regina Peis (3519632)
Peter Westermeier (3519635)
Manfred Mayer (3319896)
Michael Seidel (715355)
Georg Haberer (15852)
Klaus Mayer (57567)
Bernardo Ordas (3519629)
Hubert Pausch (151770)
AurĂŠlien Tellier (3519704)
Eva Bauer (167407)
Chris-Carolin SchĂśn (3519707)

July 2016

Metrics of the selection screens for 136 temperate inbred lines along the ten maize chromosomes base...

Additional file 7: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Abstract

Extracted data

Additional file 7: of Characterizing the population structure and genetic diversity of maize breeding germplasm in Southwest China using genome-wide SNP markers

Abstract

Extracted data

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