Additional file 1: Table S1. of Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis

Yu Zhang (12946)
Yu-Zhong Xu (3456524)
Ning Sun (162468)
Jian-Hong Liu (2486098)
Fang-Fang Chen (112186)
Xiao-Long Guan (3456533)
Ang Li (110963)
Fei Wang (19534)
Qin-Fei Zhao (3456527)
Hai-Yong Wang (3456518)
Shu-Sheng Song (3456521)
Wei Yu (43094)
Jian-Ning Zhao (3456530)
Xiao-Jun Li (1718128)

Open link

Publication date

October 2016

DOI

10.6084/m9.figshare.c.3610154_d4.v1

Abstract

Clinical characteristic of patients with rheumatoid arthritis (RA) and trauma. (DOC 45 kb

Extracted data

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Additional file 1: Table S1. of Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis

Yu Zhang (12946)
Yu-Zhong Xu (3456524)
Ning Sun (162468)
Jian-Hong Liu (2486098)
Fang-Fang Chen (112186)
Xiao-Long Guan (3456533)
Ang Li (110963)
Fei Wang (19534)
Qin-Fei Zhao (3456527)
Hai-Yong Wang (3456518)
Shu-Sheng Song (3456521)
Wei Yu (43094)
Jian-Ning Zhao (3456530)
Xiao-Jun Li (1718128)

Open link

Publication date

October 2016

DOI

10.6084/m9.figshare.c.3610154_d4.v1

Abstract

Clinical characteristic of patients with rheumatoid arthritis (RA) and trauma. (DOC 45 kb

Extracted data

Seiji Nakamura (126240)
Katsuya Suzuki (1786093)
Hiroshi Iijima (3399872)
Yuko Hata (428188)
Chun Lim (3399875)
Yohei Ishizawa (3399869)
Hideto Kameda (3399878)
Koichi Amano (2543410)
Kenichi Matsubara (22850)
Ryo Matoba (1609)
Tsutomu Takeuchi (163145)

July 2016

Illustration of the distribution of patients in this observational study. (PDF 223 kb

Additional file 1: Figure S1. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Correlation of n-cirDNA, m-cirDNA, n-csbDNA, m-csbDNA, ACPA, CRP, and RF between each other and with...

Additional file 1: Table S1. of Dysregulation of RasGRP1 in rheumatoid arthritis and modulation of RasGRP3 as a biomarker of TNFα inhibitors

Marie-Laure Golinski (786439)
Thibault Vandhuick (3441770)
Céline Derambure (786435)
Manuel Fréret (786436)
Matthieu Lecuyer (3441773)
Clément Guillou (786434)
Martine Hiron (3441767)
Olivier Boyer (211211)
Xavier Le Loët (408285)
Olivier Vittecoq (408284)
Thierry Lequerré (786441)

December 2015

Clinical and biological characteristics of rheumatoid arthritis (RA) patients treated with adalimuma...

Additional file 6: Figure S3. of Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis

Yu Zhang (12946)
Yu-Zhong Xu (3456524)
Ning Sun (162468)
Jian-Hong Liu (2486098)
Fang-Fang Chen (112186)
Xiao-Long Guan (3456533)
Ang Li (110963)
Fei Wang (19534)
Qin-Fei Zhao (3456527)
Hai-Yong Wang (3456518)
Shu-Sheng Song (3456521)
Wei Yu (43094)
Jian-Ning Zhao (3456530)
Xiao-Jun Li (1718128)

October 2016

Gene ontology (GO) analysis for down-regulated mRNAs. a Biological process (BP) analysis for down-re...

Additional file 10: Figure S7. of Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis

Yu Zhang (12946)
Yu-Zhong Xu (3456524)
Ning Sun (162468)
Jian-Hong Liu (2486098)
Fang-Fang Chen (112186)
Xiao-Long Guan (3456533)
Ang Li (110963)
Fei Wang (19534)
Qin-Fei Zhao (3456527)
Hai-Yong Wang (3456518)
Shu-Sheng Song (3456521)
Wei Yu (43094)
Jian-Ning Zhao (3456530)
Xiao-Jun Li (1718128)

October 2016

Co-expression network of the differentially expressed lncRNAs and mRNAs. ENST00000452247 was connect...

Additional file 1: of Gene expression analysis of vascular pathophysiology related to anti-TNF treatment in rheumatoid arthritis

Szilárd Póliska (3165450)
Timea Besenyei (6590546)
Edit Végh (6590549)
Attila Hamar (6590552)
Anita Pusztai (6590555)
Andrea Váncsa (6590558)
Nóra Bodnár (6590561)
Szilvia Szamosi (4799160)
Mária Csumita (6590564)
György Kerekes (6590570)
Zoltán Szabó (211818)
Zoltán Nagy (2668840)
Gabriella Szűcs (6590573)
Sándor Szántó (38675)
Gábor Zahuczky (215986)
László Nagy (2717482)
Zoltán Szekanecz (38677)

April 2019

Table S1. Association of gene expression profiles with vascular pathophysiology in biologic-naïve RA...

Additional file 1: of Higher expression of TNFα-induced genes in the synovium of patients with early rheumatoid arthritis correlates with disease activity, and predicts absence of response to first line therapy

Aurélie De Groof (3581453)
Julie Ducreux (732980)
Frances Humby (84694)
Adrien Nzeusseu Toukap (732984)
Valérie Badot (3581456)
Costantino Pitzalis (23531)
Frédéric Houssiau (3581450)
Patrick Durez (11540)
Bernard Lauwerys (3462587)

January 2016

Patients’ characteristics (immunohistochemistry studies on needle arthroscopic biopsies). Characteri...

Additional file 2: of Higher expression of TNFα-induced genes in the synovium of patients with early rheumatoid arthritis correlates with disease activity, and predicts absence of response to first line therapy

Aurélie De Groof (3581453)
Julie Ducreux (732980)
Frances Humby (84694)
Adrien Nzeusseu Toukap (732984)
Valérie Badot (3581456)
Costantino Pitzalis (23531)
Frédéric Houssiau (3581450)
Patrick Durez (11540)
Bernard Lauwerys (3462587)

January 2016

Patients’ characteristics (immunohistochemistry studies on ultrasound (US)-guided biopsies). Charact...

Additional file 1: Table S1. of Discordant inflammation and pain in early and established rheumatoid arthritis: Latent Class Analysis of Early Rheumatoid Arthritis Network and British Society for Rheumatology Biologics Register data

Daniel McWilliams (3410672)
Eamonn Ferguson (407495)
Adam Young (498861)
Patrick Kiely (3412427)
David Walsh (84863)

December 2016

Baseline characteristics of each latent class (including data from TableÂ 4). (DOCX 18 kb

Additional file 2: of RNA sequencing of mesenchymal stem cells reveals a blocking of differentiation and immunomodulatory activities under inflammatory conditions in rheumatoid arthritis patients

Jose Lamas (6670403)
Benjamin Fernandez-Gutierrez (6670406)
Arkaitz Mucientes (793599)
Fernando Marco (793601)
Yaiza Lopiz (6670409)
Juan Jover (6670412)
Lydia Abasolo (6670415)
Luis RodrĂguez-RodrĂguez (6670418)

May 2019

Table S2. Demographic and clinical characteristics of the rheumatoid arthritis patients included in ...

Additional file 3: Table S1. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Comparison of cir-nDNA, m-cirDNA, n-csbDNA, and m-csbDNA concentration in the blood from patients wi...

Additional file 1: Table S1. of Plasma miRNA expression profiles in rheumatoid arthritis associated interstitial lung disease

Shomi Oka (290181)
Hiroshi Furukawa (290179)
Kota Shimada (152649)
Atsushi Hashimoto (290186)
Akiko Komiya (290188)
Naoshi Fukui (86346)
Naoyuki Tsuchiya (290203)
Shigeto Tohma (290204)

January 2017

miRNA expression ratios in plasmas from the RA patients with or without ILD. *Undifined CŃvalues we...

Additional file 1: Table S1. of Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis

Klementy Shchetynsky (3710995)
Lina-Marcella Diaz-Gallo (3710998)
Lasse Folkersen (109487)
Aase Hensvold (3505412)
Anca Catrina (246690)
Louise Berg (54461)
Lars Klareskog (4149)
Leonid Padyukov (39206)

February 2017

Clinical features of studied groups of patients with RA and healthy controls. Table S2 The expressio...

Additional file 3: of RNA sequencing of mesenchymal stem cells reveals a blocking of differentiation and immunomodulatory activities under inflammatory conditions in rheumatoid arthritis patients

Jose Lamas (6670403)
Benjamin Fernandez-Gutierrez (6670406)
Arkaitz Mucientes (793599)
Fernando Marco (793601)
Yaiza Lopiz (6670409)
Juan Jover (6670412)
Lydia Abasolo (6670415)
Luis Rodríguez-Rodríguez (3070101)

May 2019

Table S3. Number of reads successfully mapped and assigned to the metafeature “gene” per sample. (XL...

Additional file 4: of Higher expression of TNFα-induced genes in the synovium of patients with early rheumatoid arthritis correlates with disease activity, and predicts absence of response to first line therapy

Aurélie De Groof (3581453)
Julie Ducreux (732980)
Frances Humby (84694)
Adrien Nzeusseu Toukap (732984)
Valérie Badot (3581456)
Costantino Pitzalis (23531)
Frédéric Houssiau (3581450)
Patrick Durez (11540)
Bernard Lauwerys (3462587)

January 2016

Genes over-expressed in poor responders to therapy at baseline. Lists of probe sets differentially e...

Additional file 1: of Identification of baseline gene expression signatures predicting therapeutic responses to three biologic agents in rheumatoid arthritis: a retrospective observational study

Seiji Nakamura (126240)
Katsuya Suzuki (1786093)
Hiroshi Iijima (3399872)
Yuko Hata (428188)
Chun Lim (3399875)
Yohei Ishizawa (3399869)
Hideto Kameda (3399878)
Koichi Amano (2543410)
Kenichi Matsubara (22850)
Ryo Matoba (1609)
Tsutomu Takeuchi (163145)

July 2016

Illustration of the distribution of patients in this observational study. (PDF 223 kb

Additional file 1: Figure S1. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Correlation of n-cirDNA, m-cirDNA, n-csbDNA, m-csbDNA, ACPA, CRP, and RF between each other and with...

Additional file 1: Table S1. of Dysregulation of RasGRP1 in rheumatoid arthritis and modulation of RasGRP3 as a biomarker of TNFα inhibitors

Marie-Laure Golinski (786439)
Thibault Vandhuick (3441770)
Céline Derambure (786435)
Manuel Fréret (786436)
Matthieu Lecuyer (3441773)
Clément Guillou (786434)
Martine Hiron (3441767)
Olivier Boyer (211211)
Xavier Le Loët (408285)
Olivier Vittecoq (408284)
Thierry Lequerré (786441)

December 2015

Clinical and biological characteristics of rheumatoid arthritis (RA) patients treated with adalimuma...

Additional file 6: Figure S3. of Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis

Yu Zhang (12946)
Yu-Zhong Xu (3456524)
Ning Sun (162468)
Jian-Hong Liu (2486098)
Fang-Fang Chen (112186)
Xiao-Long Guan (3456533)
Ang Li (110963)
Fei Wang (19534)
Qin-Fei Zhao (3456527)
Hai-Yong Wang (3456518)
Shu-Sheng Song (3456521)
Wei Yu (43094)
Jian-Ning Zhao (3456530)
Xiao-Jun Li (1718128)

October 2016

Gene ontology (GO) analysis for down-regulated mRNAs. a Biological process (BP) analysis for down-re...

Additional file 10: Figure S7. of Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis

Yu Zhang (12946)
Yu-Zhong Xu (3456524)
Ning Sun (162468)
Jian-Hong Liu (2486098)
Fang-Fang Chen (112186)
Xiao-Long Guan (3456533)
Ang Li (110963)
Fei Wang (19534)
Qin-Fei Zhao (3456527)
Hai-Yong Wang (3456518)
Shu-Sheng Song (3456521)
Wei Yu (43094)
Jian-Ning Zhao (3456530)
Xiao-Jun Li (1718128)

October 2016

Co-expression network of the differentially expressed lncRNAs and mRNAs. ENST00000452247 was connect...

Additional file 1: of Gene expression analysis of vascular pathophysiology related to anti-TNF treatment in rheumatoid arthritis

Szilárd Póliska (3165450)
Timea Besenyei (6590546)
Edit Végh (6590549)
Attila Hamar (6590552)
Anita Pusztai (6590555)
Andrea Váncsa (6590558)
Nóra Bodnár (6590561)
Szilvia Szamosi (4799160)
Mária Csumita (6590564)
György Kerekes (6590570)
Zoltán Szabó (211818)
Zoltán Nagy (2668840)
Gabriella Szűcs (6590573)
Sándor Szántó (38675)
Gábor Zahuczky (215986)
László Nagy (2717482)
Zoltán Szekanecz (38677)

April 2019

Table S1. Association of gene expression profiles with vascular pathophysiology in biologic-naïve RA...

Aurélie De Groof (3581453)
Julie Ducreux (732980)
Frances Humby (84694)
Adrien Nzeusseu Toukap (732984)
Valérie Badot (3581456)
Costantino Pitzalis (23531)
Frédéric Houssiau (3581450)
Patrick Durez (11540)
Bernard Lauwerys (3462587)

January 2016

Patients’ characteristics (immunohistochemistry studies on needle arthroscopic biopsies). Characteri...

Aurélie De Groof (3581453)
Julie Ducreux (732980)
Frances Humby (84694)
Adrien Nzeusseu Toukap (732984)
Valérie Badot (3581456)
Costantino Pitzalis (23531)
Frédéric Houssiau (3581450)
Patrick Durez (11540)
Bernard Lauwerys (3462587)

January 2016

Patients’ characteristics (immunohistochemistry studies on ultrasound (US)-guided biopsies). Charact...

Daniel McWilliams (3410672)
Eamonn Ferguson (407495)
Adam Young (498861)
Patrick Kiely (3412427)
David Walsh (84863)

December 2016

Baseline characteristics of each latent class (including data from TableÂ 4). (DOCX 18 kb

Additional file 2: of RNA sequencing of mesenchymal stem cells reveals a blocking of differentiation and immunomodulatory activities under inflammatory conditions in rheumatoid arthritis patients

Jose Lamas (6670403)
Benjamin Fernandez-Gutierrez (6670406)
Arkaitz Mucientes (793599)
Fernando Marco (793601)
Yaiza Lopiz (6670409)
Juan Jover (6670412)
Lydia Abasolo (6670415)
Luis RodrĂguez-RodrĂguez (6670418)

May 2019

Table S2. Demographic and clinical characteristics of the rheumatoid arthritis patients included in ...

Additional file 3: Table S1. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Comparison of cir-nDNA, m-cirDNA, n-csbDNA, and m-csbDNA concentration in the blood from patients wi...

Additional file 1: Table S1. of Plasma miRNA expression profiles in rheumatoid arthritis associated interstitial lung disease

Shomi Oka (290181)
Hiroshi Furukawa (290179)
Kota Shimada (152649)
Atsushi Hashimoto (290186)
Akiko Komiya (290188)
Naoshi Fukui (86346)
Naoyuki Tsuchiya (290203)
Shigeto Tohma (290204)

January 2017

miRNA expression ratios in plasmas from the RA patients with or without ILD. *Undifined CŃvalues we...

Additional file 1: Table S1. of Discovery of new candidate genes for rheumatoid arthritis through integration of genetic association data with expression pathway analysis

Klementy Shchetynsky (3710995)
Lina-Marcella Diaz-Gallo (3710998)
Lasse Folkersen (109487)
Aase Hensvold (3505412)
Anca Catrina (246690)
Louise Berg (54461)
Lars Klareskog (4149)
Leonid Padyukov (39206)

February 2017

Clinical features of studied groups of patients with RA and healthy controls. Table S2 The expressio...

Additional file 3: of RNA sequencing of mesenchymal stem cells reveals a blocking of differentiation and immunomodulatory activities under inflammatory conditions in rheumatoid arthritis patients

Jose Lamas (6670403)
Benjamin Fernandez-Gutierrez (6670406)
Arkaitz Mucientes (793599)
Fernando Marco (793601)
Yaiza Lopiz (6670409)
Juan Jover (6670412)
Lydia Abasolo (6670415)
Luis Rodríguez-Rodríguez (3070101)

May 2019

Table S3. Number of reads successfully mapped and assigned to the metafeature “gene” per sample. (XL...

Aurélie De Groof (3581453)
Julie Ducreux (732980)
Frances Humby (84694)
Adrien Nzeusseu Toukap (732984)
Valérie Badot (3581456)
Costantino Pitzalis (23531)
Frédéric Houssiau (3581450)
Patrick Durez (11540)
Bernard Lauwerys (3462587)

January 2016

Genes over-expressed in poor responders to therapy at baseline. Lists of probe sets differentially e...

Additional file 1: of Identification of baseline gene expression signatures predicting therapeutic responses to three biologic agents in rheumatoid arthritis: a retrospective observational study

Seiji Nakamura (126240)
Katsuya Suzuki (1786093)
Hiroshi Iijima (3399872)
Yuko Hata (428188)
Chun Lim (3399875)
Yohei Ishizawa (3399869)
Hideto Kameda (3399878)
Koichi Amano (2543410)
Kenichi Matsubara (22850)
Ryo Matoba (1609)
Tsutomu Takeuchi (163145)

July 2016

Illustration of the distribution of patients in this observational study. (PDF 223 kb

Additional file 1: Figure S1. of Circulating DNA in rheumatoid arthritis: pathological changes and association with clinically used serological markers

Elena Rykova (1298229)
Aleksey Sizikov (3994805)
Dirk Roggenbuck (407723)
Oksana Antonenko (3994799)
Leonid Bryzgalov (3601136)
Evgeniy Morozkin (3994796)
Kseniya Skvortsova (3994790)
Valentin Vlassov (503649)
Pavel Laktionov (3994793)
Vladimir Kozlov (3994802)

May 2017

Correlation of n-cirDNA, m-cirDNA, n-csbDNA, m-csbDNA, ACPA, CRP, and RF between each other and with...

Additional file 1: Table S1. of Dysregulation of RasGRP1 in rheumatoid arthritis and modulation of RasGRP3 as a biomarker of TNFα inhibitors

Marie-Laure Golinski (786439)
Thibault Vandhuick (3441770)
Céline Derambure (786435)
Manuel Fréret (786436)
Matthieu Lecuyer (3441773)
Clément Guillou (786434)
Martine Hiron (3441767)
Olivier Boyer (211211)
Xavier Le Loët (408285)
Olivier Vittecoq (408284)
Thierry Lequerré (786441)

December 2015

Clinical and biological characteristics of rheumatoid arthritis (RA) patients treated with adalimuma...

Additional file 1: Table S1. of Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis

Abstract

Extracted data

Additional file 1: Table S1. of Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis

Abstract

Extracted data

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