Additional file 7: Table S3. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

Additional file 12: Table S5. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

List of analyzed Oryza spp. samples with genetic characterization data. (CSV 74 kb

Additional file 5: Table S4. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Arlequin software estimates of Population pairwise differences (Fst) among the four genetic groups e...

Additional file 10: Table S7. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Genotypes of 177 rice accessions with 261 SSR markers on 12 chromosomes. (XLSX 244Â kb

Additional file 8: Table S4 of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

Number of accessions included in RC extended haplotype analysis (ORSC N = 81; O. sativa N = 405) (XL...

Additional file 5: Figure S4. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

The relationship between geographical and genetic distance of the ORSC. (PDF 892Â kb

Additional file 1: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Figure S1. The proportion of the 696 Philippine pigmented rice accessions that fell within each vari...

Additional file 2: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S1. The 307 unique Philippine pigmented rice accessions used to assess genetic diversity. Tabl...

Additional file 3: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S9. Philippine pigmented rice accessions allocated to redefined geographical regions. Table S1...

Additional file 11: Figure S7. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina Villafañe (3933272)
José Bocanegra (3933269)
Rodrigo Moreno (2938173)

April 2017

Details of panicles (top), ligules and auricles (bottom) of (A) Oryza latifolia with flower size sma...

Additional file 2: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

Peter Civáň (491043)
Terence Brown (5132765)

April 2018

Supporting figures. Figure S1. Schematic summary of the data processing and analysis pipeline. Figur...

Additional file 6: Figure S2. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Neighbour joining tree of 217 rice accessions. Accessions names are shown. (PDF 1227 kb

Additional file 3: of Association Mapping of Yield and Yield-related Traits Under Reproductive Stage Drought Stress in Rice (Oryza sativa L.)

B. Swamy (3473741)
Noraziyah Shamsudin (4035344)
Site Rahman (4035347)
Ramil Mauleon (276292)
Wickneswari Ratnam (3933176)
Ma. Sta. Cruz (4035341)
Arvind Kumar (227201)

May 2017

Table S1. Various population parameters measured in the germplasm. Table S2. Subpopulation-specific ...

Additional file 6: of Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India

Somnath Roy (754329)
B. Marndi (3539735)
B. Mawkhlieng (3539744)
A. Banerjee (3539741)
R. Yadav (3539738)
A. Misra (1571932)
K. Bansal (3539732)

July 2016

Determination of the best K value(s) based on mean LnP(D) over five runs for each K value, and rate ...

Additional file 3: Table S2. of Genetic and root phenotype diversity in Sri Lankan rice landraces may be related to drought resistance

Mayuri Munasinghe (729901)
Adam Price (729908)

May 2016

Genotype of 326 SNPs for 135 Sri Lankan landraces plus 18 OryzaSNP accessions (the last 18 entries)....

Additional file 3: Figure S1. of Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing

Wei Tong (6537)
Tae-Sung Kim (78359)
Yong-Jin Park (391031)

October 2016

Overall Ts/Tv (Transition/ Transversion ratio) in 1kb bins of the whole collection and different gro...

Additional file 12: Table S5. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

List of analyzed Oryza spp. samples with genetic characterization data. (CSV 74 kb

Additional file 5: Table S4. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Arlequin software estimates of Population pairwise differences (Fst) among the four genetic groups e...

Additional file 10: Table S7. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Genotypes of 177 rice accessions with 261 SSR markers on 12 chromosomes. (XLSX 244Â kb

Additional file 8: Table S4 of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

Number of accessions included in RC extended haplotype analysis (ORSC N = 81; O. sativa N = 405) (XL...

Additional file 5: Figure S4. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

HyunJung Kim (3446192)
Janelle Jung (3446189)
Namrata Singh (1971532)
Anthony Greenberg (3446195)
Jeff Doyle (3446183)
Wricha Tyagi (248597)
Jong-Wook Chung (3446180)
Jennifer Kimball (76861)
Ruaraidh Hamilton (3446186)
Susan McCouch (14331)

October 2016

The relationship between geographical and genetic distance of the ORSC. (PDF 892Â kb

Additional file 1: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Figure S1. The proportion of the 696 Philippine pigmented rice accessions that fell within each vari...

Additional file 2: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S1. The 307 unique Philippine pigmented rice accessions used to assess genetic diversity. Tabl...

Additional file 3: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S9. Philippine pigmented rice accessions allocated to redefined geographical regions. Table S1...

Additional file 11: Figure S7. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina Villafañe (3933272)
José Bocanegra (3933269)
Rodrigo Moreno (2938173)

April 2017

Details of panicles (top), ligules and auricles (bottom) of (A) Oryza latifolia with flower size sma...

Additional file 2: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

Peter Civáň (491043)
Terence Brown (5132765)

April 2018

Supporting figures. Figure S1. Schematic summary of the data processing and analysis pipeline. Figur...

Additional file 6: Figure S2. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Neighbour joining tree of 217 rice accessions. Accessions names are shown. (PDF 1227 kb

Additional file 3: of Association Mapping of Yield and Yield-related Traits Under Reproductive Stage Drought Stress in Rice (Oryza sativa L.)

B. Swamy (3473741)
Noraziyah Shamsudin (4035344)
Site Rahman (4035347)
Ramil Mauleon (276292)
Wickneswari Ratnam (3933176)
Ma. Sta. Cruz (4035341)
Arvind Kumar (227201)

May 2017

Table S1. Various population parameters measured in the germplasm. Table S2. Subpopulation-specific ...

Additional file 6: of Genetic diversity and structure in hill rice (Oryza sativa L.) landraces from the North-Eastern Himalayas of India

Somnath Roy (754329)
B. Marndi (3539735)
B. Mawkhlieng (3539744)
A. Banerjee (3539741)
R. Yadav (3539738)
A. Misra (1571932)
K. Bansal (3539732)

July 2016

Determination of the best K value(s) based on mean LnP(D) over five runs for each K value, and rate ...

Additional file 3: Table S2. of Genetic and root phenotype diversity in Sri Lankan rice landraces may be related to drought resistance

Mayuri Munasinghe (729901)
Adam Price (729908)

May 2016

Genotype of 326 SNPs for 135 Sri Lankan landraces plus 18 OryzaSNP accessions (the last 18 entries)....

Additional file 3: Figure S1. of Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing

Wei Tong (6537)
Tae-Sung Kim (78359)
Yong-Jin Park (391031)

October 2016

Overall Ts/Tv (Transition/ Transversion ratio) in 1kb bins of the whole collection and different gro...

Additional file 12: Table S5. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Evert Thomas (42369)
Eduardo Tovar (3933245)
Carolina VillafaĂąe (3933248)
JosĂŠ Bocanegra (3933242)
Rodrigo Moreno (2938173)

April 2017

List of analyzed Oryza spp. samples with genetic characterization data. (CSV 74 kb

Additional file 5: Table S4. of Genetic Diversity and Population Structure of Rice Varieties Cultivated in Temperate Regions

Juan Reig-Valiente (3435071)
Juan Viruel (641207)
Ester Sales (3435077)
Luis Marqués (3435083)
Javier Terol (68570)
Marta Gut (203324)
Sophia Derdak (642670)
Manuel Talón (52294)
Concha Domingo (3435080)

October 2016

Arlequin software estimates of Population pairwise differences (Fst) among the four genetic groups e...

Additional file 10: Table S7. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Genotypes of 177 rice accessions with 261 SSR markers on 12 chromosomes. (XLSX 244Â kb

Additional file 7: Table S3. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

Abstract

Extracted data

Additional file 7: Table S3. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

Abstract

Extracted data

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