Relationships among 144 accessions of the Daucus carota complex and outgroups from an exhaustive quartet sampling inference using 18,565 SNPs (10Â % missing imputed genotypes) obtained by GBS. Numbers above the branches represent bootstrap values, with only values higher than 70Â % shown. Names given to clades refer to the geographic origin and improvement status of the accessions of the D. carota complex. ME & E refers to Middle East & Europe. Accessions designated by double stars are misplaced relative to the maximum likelihood topology of the Daucus carota complex using the same number of SNPs. The outgroup taxon is D. syrticus. (PDF 1 MB
Supplementary data 1. The 83 accessions of Daucus, and one accession of related genus examined in th...
Genomic location of unique alleles in Ac13, Ac5 and Ac38 on cowpea linkage groups (LGs). Genomic reg...
Figure S1. Workflow of STRUCTURE 2.3.4 software implementation at MCIA cluster nodes. Figure S2. Gen...
Additional file 7: Figure S5. Relationships among 144 accessions of Daucus carota complex and outgro...
Additional file 8: Figure S6. Relationships among 144 accessions of Daucus carota complex and outgro...
Additional file 5: Figure S3. Maximum likelihood reconstruction and structure of the genetic diversi...
Additional file 3: Figure S1. Phylogenomics of Daucus from a maximum likelihood analysis using 164 a...
Additional file 4: Figure S2. Phylogenomics of Daucus from a maximum likelihood analysis using 164 a...
Results: We used GBS to obtain SNPs covering all nine Daucus carota chromosomes from 162 accessions ...
Additional file 9: Figure S7. Species tree of the Daucus carota complex based on a coalescent model ...
Background: The majority of the subspecies of Daucus carota have not yet been discriminated clearly ...
Additional file 6: Figure S4. Bayesian phylogenetic tree of 144 accessions of Daucus carota complex ...
The genus Daucus is widely distributed worldwide, but with a concentration of diversity in the Medit...
•Premise of study: Molecular phylogenetics of genome‐scale data sets (phylogenomics) often produces ...
•Premise of the study: We explored the utility of multiple nuclear orthologs for the taxonomic resol...
Supplementary data 1. The 83 accessions of Daucus, and one accession of related genus examined in th...
Genomic location of unique alleles in Ac13, Ac5 and Ac38 on cowpea linkage groups (LGs). Genomic reg...
Figure S1. Workflow of STRUCTURE 2.3.4 software implementation at MCIA cluster nodes. Figure S2. Gen...
Additional file 7: Figure S5. Relationships among 144 accessions of Daucus carota complex and outgro...
Additional file 8: Figure S6. Relationships among 144 accessions of Daucus carota complex and outgro...
Additional file 5: Figure S3. Maximum likelihood reconstruction and structure of the genetic diversi...
Additional file 3: Figure S1. Phylogenomics of Daucus from a maximum likelihood analysis using 164 a...
Additional file 4: Figure S2. Phylogenomics of Daucus from a maximum likelihood analysis using 164 a...
Results: We used GBS to obtain SNPs covering all nine Daucus carota chromosomes from 162 accessions ...
Additional file 9: Figure S7. Species tree of the Daucus carota complex based on a coalescent model ...
Background: The majority of the subspecies of Daucus carota have not yet been discriminated clearly ...
Additional file 6: Figure S4. Bayesian phylogenetic tree of 144 accessions of Daucus carota complex ...
The genus Daucus is widely distributed worldwide, but with a concentration of diversity in the Medit...
•Premise of study: Molecular phylogenetics of genome‐scale data sets (phylogenomics) often produces ...
•Premise of the study: We explored the utility of multiple nuclear orthologs for the taxonomic resol...
Supplementary data 1. The 83 accessions of Daucus, and one accession of related genus examined in th...
Genomic location of unique alleles in Ac13, Ac5 and Ac38 on cowpea linkage groups (LGs). Genomic reg...
Figure S1. Workflow of STRUCTURE 2.3.4 software implementation at MCIA cluster nodes. Figure S2. Gen...