<p>Phylogenetic analysis of PIF protein subfamily in Viridiplantae performed with 112 sequences from 13 species. Accession numbers of all sequences are detailed in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0165929#pone.0165929.s010" target="_blank">S1 Table</a>. Compacted clades encompassing more than one sequence are indicated by black triangles. <i>Arabidopsis thaliana</i> and <i>Solanum lycopersicum</i> sequences are indicated with green and red circles, respectively. PIF clades are highlighted with colored squares. Numbers at nodes represent bootstrap/approximate likelihood-ratio test (aLRT) values.</p
<p>The complete data set includes transposase sequences with indels or stop codons. The best ML tree...
<p>Phylogenetic analyses are summarized by a BI (CAT-Poisson model) consensus tree with branch suppo...
<p>The phylogenetic tree of deduced amino acid sequences was generated with the neighbor-joining met...
(A) Relationships between PIFs in wheat, Oryza sativa, Arabidopsis, B. distachyon, and Zea mays. The...
(A) Schematic representation of Viridiplantae evolution and relative position of the species used in...
Phylogenetic analysis of PIFs in wheat and four other plant species clustered the proteins into five...
<p>Maximum likelihood phylogeny derived by the full-protein sequences identified in both plants (gre...
<p>The four ADF subclasses are highlighted in boxes. Species designations are as follows: At, <i>Ara...
Multiple sequence alignment of PIF proteins in Arabidopsis, rice, maize, Brachypodium distachyon, an...
<p>The phylogeny was constructed using neighbor joining method with 1,000 bootstrap replicates. a) P...
<p>The amino acid sequences of the AP2 domain were aligned using Muscle, and the phylogenetic tree w...
<p>(A) Consensus distribution of motifs in all Viridiplantae sequences. (B) Distribution of motifs a...
<p>A) Phylogenetic reconstruction of the RAP2.4 subgroup of the group I AP2/ERF TFs. B) Phylogenetic...
<p>For Arabidopsis, the AGI symbol is presented, while for other species, the first two letters of e...
<p>Molecular phylogenetic analysis by maximum likelihood (ML) method implemented in MEGA6 [<a href="...
<p>The complete data set includes transposase sequences with indels or stop codons. The best ML tree...
<p>Phylogenetic analyses are summarized by a BI (CAT-Poisson model) consensus tree with branch suppo...
<p>The phylogenetic tree of deduced amino acid sequences was generated with the neighbor-joining met...
(A) Relationships between PIFs in wheat, Oryza sativa, Arabidopsis, B. distachyon, and Zea mays. The...
(A) Schematic representation of Viridiplantae evolution and relative position of the species used in...
Phylogenetic analysis of PIFs in wheat and four other plant species clustered the proteins into five...
<p>Maximum likelihood phylogeny derived by the full-protein sequences identified in both plants (gre...
<p>The four ADF subclasses are highlighted in boxes. Species designations are as follows: At, <i>Ara...
Multiple sequence alignment of PIF proteins in Arabidopsis, rice, maize, Brachypodium distachyon, an...
<p>The phylogeny was constructed using neighbor joining method with 1,000 bootstrap replicates. a) P...
<p>The amino acid sequences of the AP2 domain were aligned using Muscle, and the phylogenetic tree w...
<p>(A) Consensus distribution of motifs in all Viridiplantae sequences. (B) Distribution of motifs a...
<p>A) Phylogenetic reconstruction of the RAP2.4 subgroup of the group I AP2/ERF TFs. B) Phylogenetic...
<p>For Arabidopsis, the AGI symbol is presented, while for other species, the first two letters of e...
<p>Molecular phylogenetic analysis by maximum likelihood (ML) method implemented in MEGA6 [<a href="...
<p>The complete data set includes transposase sequences with indels or stop codons. The best ML tree...
<p>Phylogenetic analyses are summarized by a BI (CAT-Poisson model) consensus tree with branch suppo...
<p>The phylogenetic tree of deduced amino acid sequences was generated with the neighbor-joining met...