Correlations between the CPC values obtained from different RNA kinetic datasets in S. cerevisiae (“Cramer (1),” “Cramer (2),” and “Gresham”) (A-C) and S. pombe (“Mata (5)” and “Gagneur”) as well as those obtained from the RNAPII ChIP data in S. pombe (“Bahler”) (D-F) [55]. Spearman's ρ and P value are shown. The circles and cross signs represent optimal and non-optimal codons, respectively. (PDF 36 kb
Figure in Powerpoint format (ppt) showing the average CAI (A) and tAI (B) values of sRNA-intercating...
The coefficient of variation (CV) of FCs. (a) The coefficient of variation (CV) of FCs in the three ...
Abstract Background Evidence in diverse organisms suggests that codon optimality is a major determin...
Codon optimality and mRNA synthesis rates are significantly associated in S. cerevisiae. (A) The CPC...
Correlations between optimal codon content and mRNA half-lives in S. cerevisiae and S. pombe. (A) Sc...
Comparison of mRNA synthesis rates with ChIP intensity signals for RNAPII in S. pombe. (A-G) Scatter...
Comparison of mRNA half-life measurements in S. cerevisiae. The pairwise scatterplots compare mRNA h...
Spearman's correlation coefficients and Spearman's partial correlations controlling for mRNA abundan...
tAIg values, percent optimal codons, mRNA half-lives, synthesis rates, and abundance in S. pombe. (X...
tAIg values, percent optimal codons, mRNA half-lives synthesis rates, and abundance in S. cerevisiae...
Test for association of the out-of-frame inhibitory codon pairs with mRNA decay rate, protein abunda...
An illustration of various macro-molecules interacting with the mRNA transcript and regulatory signa...
a show frequencies of tetranucleotide occurrences (in percentages) in terms of “Py,Pu” in H. sapiens...
Properties of 61 nonstop codons. Shown are corresponding amino acids, relative adaptiveness values f...
Figure S1. Fungal CCR effectors are conserved within the zinc finger DNA binding domain. Figure S2. ...
Figure in Powerpoint format (ppt) showing the average CAI (A) and tAI (B) values of sRNA-intercating...
The coefficient of variation (CV) of FCs. (a) The coefficient of variation (CV) of FCs in the three ...
Abstract Background Evidence in diverse organisms suggests that codon optimality is a major determin...
Codon optimality and mRNA synthesis rates are significantly associated in S. cerevisiae. (A) The CPC...
Correlations between optimal codon content and mRNA half-lives in S. cerevisiae and S. pombe. (A) Sc...
Comparison of mRNA synthesis rates with ChIP intensity signals for RNAPII in S. pombe. (A-G) Scatter...
Comparison of mRNA half-life measurements in S. cerevisiae. The pairwise scatterplots compare mRNA h...
Spearman's correlation coefficients and Spearman's partial correlations controlling for mRNA abundan...
tAIg values, percent optimal codons, mRNA half-lives, synthesis rates, and abundance in S. pombe. (X...
tAIg values, percent optimal codons, mRNA half-lives synthesis rates, and abundance in S. cerevisiae...
Test for association of the out-of-frame inhibitory codon pairs with mRNA decay rate, protein abunda...
An illustration of various macro-molecules interacting with the mRNA transcript and regulatory signa...
a show frequencies of tetranucleotide occurrences (in percentages) in terms of “Py,Pu” in H. sapiens...
Properties of 61 nonstop codons. Shown are corresponding amino acids, relative adaptiveness values f...
Figure S1. Fungal CCR effectors are conserved within the zinc finger DNA binding domain. Figure S2. ...
Figure in Powerpoint format (ppt) showing the average CAI (A) and tAI (B) values of sRNA-intercating...
The coefficient of variation (CV) of FCs. (a) The coefficient of variation (CV) of FCs in the three ...
Abstract Background Evidence in diverse organisms suggests that codon optimality is a major determin...