Additional file 11: Figure S5. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

Additional file 3: Table S3. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

Muhammad Khalil-Ur-Rehman (3682813)
Long Sun (572625)
Chun-Xia Li (690275)
Muhammad Faheem (1767637)
Wu Wang (2275564)
Jian-Min Tao (3682810)

January 2017

Differentially expressed genes between summer buds vs paradormancy. (XLSX 187Â kb

Additional file 6: Table S6. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

Muhammad Khalil-Ur-Rehman (3682813)
Long Sun (572625)
Chun-Xia Li (690275)
Muhammad Faheem (1767637)
Wu Wang (2275564)
Jian-Min Tao (3682810)

January 2017

Differentially expressed genes involved in KEGG pathway between summer buds vs endo dormancy. (XLSX ...

Additional file 12: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

Ryan Ghan (3402119)
Juli Petereit (3453428)
Richard Tillett (3874717)
Karen Schlauch (3402116)
David Toubiana (175451)
Aaron Fait (175461)
Grant Cramer (3402113)

May 2017

Summary details of all 64 gene modules. Gene module rows are highlighted with different colors to re...

Additional file 6: Figure S3. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

Li Wang (15202)
Xiaoyan Hu (362988)
Chen Jiao (755516)
Zhi Li (72309)
Zhangjun Fei (14143)
Xiaoxiao Yan (188989)
Chonghuai Liu (3488576)
Yuejin Wang (3072678)
Xiping Wang (136332)

November 2016

Gene Ontology classification of differentially expressed genes between seeds of seeded and seedless ...

Additional file 1: Table S1. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

Li Wang (15202)
Xiaoyan Hu (362988)
Chen Jiao (755516)
Zhi Li (72309)
Zhangjun Fei (14143)
Xiaoxiao Yan (188989)
Chonghuai Liu (3488576)
Yuejin Wang (3072678)
Xiping Wang (136332)

November 2016

Number of reads cleaned and mapped with Tophat of RNA-seq samples. ‘S’ represents ‘stage’. (XLS 19 k...

Additional file 2: Table S2. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

Li Wang (15202)
Xiaoyan Hu (362988)
Chen Jiao (755516)
Zhi Li (72309)
Zhangjun Fei (14143)
Xiaoxiao Yan (188989)
Chonghuai Liu (3488576)
Yuejin Wang (3072678)
Xiping Wang (136332)

November 2016

Correlation coefficients of transcriptome profiles among RNA-seq samples. ‘S’ stands for ‘stage’. (X...

Additional file 9: Figure S1. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Claudia Muñoz-Espinoza (3486728)
Alex Di Genova (3486725)
José Correa (734473)
Romina Silva (3486734)
Alejandro Maass (3454730)
Mauricio González-Agüero (3486731)
Ariel Orellana (183582)
Patricio Hinrichsen (745062)

April 2016

A, B, C, D, E. GO enrichment of five clusters identified in hierarchical clustering of 526 DE genes,...

Transcriptome analysis during berry development provides insights into co-regulated and altered gene expression between a seeded wine grape variety and its seedless somatic variant

Nwafor, C.C.
Gribaudo, I.
Schneider, A.
Wehrens, R.
Grando, M.S.
Costantini, L.

January 2014

Background Seedless grapes are greatly appreciated for fresh and dry fruit consumption. Parthenocar...

Additional file 6: Table S6. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Claudia Muñoz-Espinoza (3486728)
Alex Di Genova (3486725)
José Correa (734473)
Romina Silva (3486734)
Alejandro Maass (3454730)
Mauricio González-Agüero (3486731)
Ariel Orellana (183582)
Patricio Hinrichsen (745062)

April 2016

Differentially expressed (DE) genes identified in the comparison between LB and SB segregants, in th...

Additional file 16: Table S10. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Claudia Muñoz-Espinoza (3486728)
Alex Di Genova (3486725)
José Correa (734473)
Romina Silva (3486734)
Alejandro Maass (3454730)
Mauricio González-Agüero (3486731)
Ariel Orellana (183582)
Patricio Hinrichsen (745062)

April 2016

Primers designed for the analysis of the expression level of the seven candidate genes, based on rea...

Additional file 15: Figure S6. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Claudia Muñoz-Espinoza (3486728)
Alex Di Genova (3486725)
José Correa (734473)
Romina Silva (3486734)
Alejandro Maass (3454730)
Mauricio González-Agüero (3486731)
Ariel Orellana (183582)
Patricio Hinrichsen (745062)

April 2016

Network analysis of co-expressed genes among LB and SB segregants. In blue and red are represented D...

Additional file 4: of Comparative RNA-Seq profiling of berry development between table grape ‘Kyoho’ and its early-ripening mutant ’Fengzao’

Da-Long Guo (3512159)
Fei-Fei Xi (3512162)
Yi-He Yu (3512156)
Xiao-Yu Zhang (738362)
Guo-Hai Zhang (1637623)
Gan-Yuan Zhong (433794)

October 2016

Expression clusters, annotation, and functional categories and distribution of 20,804 genes expresse...

The Grapevine Expression Atlas Reveals a Deep Transcriptome Shift Driving the Entire Plant into a Maturation Program

M. Fasoli
S. Dal Santo
S. Zenoni
G.B. Tornielli
Lorenzo Farina
A. Zamboni
A. Porceddu
L. Venturini
M. Bicego
V. Murino
A. Ferrarini
M. Delledonne
M. Pezzotti

January 2012

We developed a genome-wide transcriptomic atlas of grapevine (Vitis vinifera) based on 54 samples re...

Additional file 4: of Changes in transcription of cytokinin metabolism and signalling genes in grape (Vitis vinifera L.) berries are associated with the ripening-related increase in isopentenyladenine

Christine Böttcher (321819)
Crista Burbidge (3414122)
Paul Boss (3414119)
Christopher Davies (67862)

September 2015

Phylogenetic relationship of RR coding sequences from grapevine and Arabidopsis. The unrooted tree w...

Genetic investigation of seed development in grapevine

Nwafor, C.C.

January 2015

In a comprehensive attempt to understand the molecular and cellular processes driving seedlessness i...

Additional file 3: Table S3. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

Muhammad Khalil-Ur-Rehman (3682813)
Long Sun (572625)
Chun-Xia Li (690275)
Muhammad Faheem (1767637)
Wu Wang (2275564)
Jian-Min Tao (3682810)

January 2017

Differentially expressed genes between summer buds vs paradormancy. (XLSX 187Â kb

Additional file 6: Table S6. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

Muhammad Khalil-Ur-Rehman (3682813)
Long Sun (572625)
Chun-Xia Li (690275)
Muhammad Faheem (1767637)
Wu Wang (2275564)
Jian-Min Tao (3682810)

January 2017

Differentially expressed genes involved in KEGG pathway between summer buds vs endo dormancy. (XLSX ...

Additional file 12: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

Ryan Ghan (3402119)
Juli Petereit (3453428)
Richard Tillett (3874717)
Karen Schlauch (3402116)
David Toubiana (175451)
Aaron Fait (175461)
Grant Cramer (3402113)

May 2017

Summary details of all 64 gene modules. Gene module rows are highlighted with different colors to re...

Additional file 6: Figure S3. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

Li Wang (15202)
Xiaoyan Hu (362988)
Chen Jiao (755516)
Zhi Li (72309)
Zhangjun Fei (14143)
Xiaoxiao Yan (188989)
Chonghuai Liu (3488576)
Yuejin Wang (3072678)
Xiping Wang (136332)

November 2016

Gene Ontology classification of differentially expressed genes between seeds of seeded and seedless ...

Additional file 1: Table S1. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

Li Wang (15202)
Xiaoyan Hu (362988)
Chen Jiao (755516)
Zhi Li (72309)
Zhangjun Fei (14143)
Xiaoxiao Yan (188989)
Chonghuai Liu (3488576)
Yuejin Wang (3072678)
Xiping Wang (136332)

November 2016

Number of reads cleaned and mapped with Tophat of RNA-seq samples. ‘S’ represents ‘stage’. (XLS 19 k...

Additional file 2: Table S2. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

Li Wang (15202)
Xiaoyan Hu (362988)
Chen Jiao (755516)
Zhi Li (72309)
Zhangjun Fei (14143)
Xiaoxiao Yan (188989)
Chonghuai Liu (3488576)
Yuejin Wang (3072678)
Xiping Wang (136332)

November 2016

Correlation coefficients of transcriptome profiles among RNA-seq samples. ‘S’ stands for ‘stage’. (X...

Additional file 9: Figure S1. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Claudia Muñoz-Espinoza (3486728)
Alex Di Genova (3486725)
José Correa (734473)
Romina Silva (3486734)
Alejandro Maass (3454730)
Mauricio González-Agüero (3486731)
Ariel Orellana (183582)
Patricio Hinrichsen (745062)

April 2016

A, B, C, D, E. GO enrichment of five clusters identified in hierarchical clustering of 526 DE genes,...

Transcriptome analysis during berry development provides insights into co-regulated and altered gene expression between a seeded wine grape variety and its seedless somatic variant

Nwafor, C.C.
Gribaudo, I.
Schneider, A.
Wehrens, R.
Grando, M.S.
Costantini, L.

January 2014

Background Seedless grapes are greatly appreciated for fresh and dry fruit consumption. Parthenocar...

Additional file 6: Table S6. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Claudia Muñoz-Espinoza (3486728)
Alex Di Genova (3486725)
José Correa (734473)
Romina Silva (3486734)
Alejandro Maass (3454730)
Mauricio González-Agüero (3486731)
Ariel Orellana (183582)
Patricio Hinrichsen (745062)

April 2016

Differentially expressed (DE) genes identified in the comparison between LB and SB segregants, in th...

Additional file 16: Table S10. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Claudia Muñoz-Espinoza (3486728)
Alex Di Genova (3486725)
José Correa (734473)
Romina Silva (3486734)
Alejandro Maass (3454730)
Mauricio González-Agüero (3486731)
Ariel Orellana (183582)
Patricio Hinrichsen (745062)

April 2016

Primers designed for the analysis of the expression level of the seven candidate genes, based on rea...

Additional file 15: Figure S6. of Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight

Claudia Muñoz-Espinoza (3486728)
Alex Di Genova (3486725)
José Correa (734473)
Romina Silva (3486734)
Alejandro Maass (3454730)
Mauricio González-Agüero (3486731)
Ariel Orellana (183582)
Patricio Hinrichsen (745062)

April 2016

Network analysis of co-expressed genes among LB and SB segregants. In blue and red are represented D...

Additional file 4: of Comparative RNA-Seq profiling of berry development between table grape ‘Kyoho’ and its early-ripening mutant ’Fengzao’

Da-Long Guo (3512159)
Fei-Fei Xi (3512162)
Yi-He Yu (3512156)
Xiao-Yu Zhang (738362)
Guo-Hai Zhang (1637623)
Gan-Yuan Zhong (433794)

October 2016

Expression clusters, annotation, and functional categories and distribution of 20,804 genes expresse...

The Grapevine Expression Atlas Reveals a Deep Transcriptome Shift Driving the Entire Plant into a Maturation Program

M. Fasoli
S. Dal Santo
S. Zenoni
G.B. Tornielli
Lorenzo Farina
A. Zamboni
A. Porceddu
L. Venturini
M. Bicego
V. Murino
A. Ferrarini
M. Delledonne
M. Pezzotti

January 2012

We developed a genome-wide transcriptomic atlas of grapevine (Vitis vinifera) based on 54 samples re...

Additional file 4: of Changes in transcription of cytokinin metabolism and signalling genes in grape (Vitis vinifera L.) berries are associated with the ripening-related increase in isopentenyladenine

Christine Böttcher (321819)
Crista Burbidge (3414122)
Paul Boss (3414119)
Christopher Davies (67862)

September 2015

Phylogenetic relationship of RR coding sequences from grapevine and Arabidopsis. The unrooted tree w...

Genetic investigation of seed development in grapevine

Nwafor, C.C.

January 2015

In a comprehensive attempt to understand the molecular and cellular processes driving seedlessness i...

Additional file 3: Table S3. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

Muhammad Khalil-Ur-Rehman (3682813)
Long Sun (572625)
Chun-Xia Li (690275)
Muhammad Faheem (1767637)
Wu Wang (2275564)
Jian-Min Tao (3682810)

January 2017

Differentially expressed genes between summer buds vs paradormancy. (XLSX 187Â kb

Additional file 6: Table S6. of Comparative RNA-seq based transcriptomic analysis of bud dormancy in grape

Muhammad Khalil-Ur-Rehman (3682813)
Long Sun (572625)
Chun-Xia Li (690275)
Muhammad Faheem (1767637)
Wu Wang (2275564)
Jian-Min Tao (3682810)

January 2017

Differentially expressed genes involved in KEGG pathway between summer buds vs endo dormancy. (XLSX ...

Additional file 12: of The common transcriptional subnetworks of the grape berry skin in the late stages of ripening

Ryan Ghan (3402119)
Juli Petereit (3453428)
Richard Tillett (3874717)
Karen Schlauch (3402116)
David Toubiana (175451)
Aaron Fait (175461)
Grant Cramer (3402113)

May 2017

Summary details of all 64 gene modules. Gene module rows are highlighted with different colors to re...

Additional file 11: Figure S5. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

Abstract

Extracted data

Additional file 11: Figure S5. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

Abstract

Extracted data

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