Additional file 3 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Human_Phenotype_Ontology

Daria Doncevic (13270497)

September 2022

All files from the preprocessed Human Phenotype Ontology (HPO). *_annot.csv: Files containing annota...

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

Kohler, S.
Doelken, S.C.
Mungall, C.J.
Bauer, S.
Firth, H.V.
Bailleul-Forestier, I.
Black, G.C.M.
Brown, D.L.
Brudno, M.
Campbell, J.
FitzPatrick, D.R.
Eppig, J.T.
Jackson, A.P.
Freson, K.
Girdea, M.
Helbig, I.
Hurst, J.A.
Jahn, J.
Jackson, L.G.
Kelly, A.M.
Ledbetter, D.H.
Mansour, S.
Martin, C.L.
Moss, C.
Mumford, A.
Ouwehand, W.H.
Park, S.M.
Riggs, E.R.
Scott, R.H.
Sisodiya, S.
Vooren, S. van der
Wapner, R.J.
Wilkie, A.O.
Wright, C.F.
Silfhout, A.T. van
Leeuw, N. de
Vries, B. de
Washingthon, N.L.
Smith, C.L.
Westerfield, M.
Schofield, P.
Ruef, B.J.
Gkoutos, G.V.
Haendel, M.
Smedley, D.
Lewis, S.E.
Robinson, P.N.

January 2014

Contains fulltext : 136954.pdf (publisher's version ) (Open Access)The Human Pheno...

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Köhler, Sebastian
Doelken, Sandra C
Mungall, Christopher J
Bauer, Sebastian
Firth, Helen V
Bailleul-Forestier, Isabelle
Black, Graeme C M
Brown, Danielle L
Brudno, Michael
Campbell, Jennifer
Fitzpatrick, David R
Eppig, Janan T
Jackson, Andrew P
Freson, Kathleen
Girdea, Marta
Helbig, Ingo
Hurst, Jane A
Jähn, Johanna
Jackson, Laird G
Kelly, Anne M
Ledbetter, David H
Mansour, Sahar
Martin, Christa L
Moss, Celia
Mumford, Andrew
Ouwehand, Willem H
Park, Soo-Mi
Riggs, Erin Rooney
Scott, Richard H
Sisodiya, Sanjay
Vooren, Steven Van
Wapner, Ronald J
Wilkie, Andrew O M
Wright, Caroline F
Vulto-van Silfhout, Anneke T
Leeuw, Nicole de
de Vries, Bert B A
Washingthon, Nicole L
Smith, Cynthia
Westerfield, Monte
Schofield, Paul
Ruef, Barbara J
Gkoutos, Georgios V
Haendel, Melissa
Smedley, Damian
Lewis, Suzanna E
Robinson, Peter N

January 2014

The Human Phenotype Ontology (HPO) project, available at http://www.human-phenotype-ontology.org, pr...

Additional file 1 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Robert Hoehndorf (38206)
Mona Alshahrani (3576653)
Georgios Gkoutos (3576641)
George Gosline (3576644)
Quentin Groom (3576635)
Thomas Hamann (1618246)
Jens Kattge (159419)
Sylvia de Oliveira (3576647)
Marco Schmidt (3576638)
Soraya Sierra (452621)
Erik Smets (206615)
Rutger Vos (3504797)
Claus Weiland (3576650)

November 2016

Annotation of Floras 1. The file contains the manual annotation of Salacia erecta, Cucumeropsis mann...

Additional file 2 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Robert Hoehndorf (38206)
Mona Alshahrani (3576653)
Georgios Gkoutos (3576641)
George Gosline (3576644)
Quentin Groom (3576635)
Thomas Hamann (1618246)
Jens Kattge (159419)
Sylvia de Oliveira (3576647)
Marco Schmidt (3576638)
Soraya Sierra (452621)
Erik Smets (206615)
Rutger Vos (3504797)
Claus Weiland (3576650)

November 2016

Annotation of Floras 2. The file contains the manual annotation of Salacia erecta, Andropogon chinen...

Additional file 4 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Robert Hoehndorf (38206)
Mona Alshahrani (3576653)
Georgios Gkoutos (3576641)
George Gosline (3576644)
Quentin Groom (3576635)
Thomas Hamann (1618246)
Jens Kattge (159419)
Sylvia de Oliveira (3576647)
Marco Schmidt (3576638)
Soraya Sierra (452621)
Erik Smets (206615)
Rutger Vos (3504797)
Claus Weiland (3576650)

November 2016

Flora descriptions. The original descriptions of Salacia erecta, Andropogon chinensis, Oxalis, and A...

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Hoehndorf, Robert
Alshahrani, Mona
Gkoutos, Georgios V.
Gosline, George
Groom, Quentin
Hamann, Thomas
Kattge, Jens
Mota de Oliveira, Sylvia
Schmidt, Marco
Sierra, Soraya
Smets, Erik
Vos, Rutger A.
Weiland, Claus

January 2016

BACKGROUND: The systematic analysis of a large number of comparable plant trait data can support inv...

The flora phenotype ontology (FLOPO) : tool for integrating morphological traits and phenotypes of vascular plants

Hoehndorf, Robert
Alshahran, Mona
Gkoutos, Georgios V.
Gosline, George
Groom, Quentin
Hamann, Thomas
Kattge, Jens
Mota de Oliveira, Sylvia
Schmidt, Marco
Sierra, Soraya
Smets, Erik
Vos, Rutger Aldo
Weiland, Claus

November 2017

Background: The systematic analysis of a large number of comparable plant trait data can support inv...

The flora phenotype ontology (FLOPO):tool for integrating morphological traits and phenotypes of vascular plants

Hoehndorf, Robert
Alshahrani, Mona
Gkoutos, Georgios
Gosline, George
Groom, Quentin
Hamann, Thomas
Kattge, Jens
Mota de Oliveria, Sylvia
Schmidt, Marco
Sierra, Soraya
Smets, Erik
Vos, Rutger A.
Weiland, Claus

November 2016

BackgroundThe systematic analysis of a large number of comparable plant trait data can support inves...

Dryad Supplementary File 15. Genera dropped from the vascular plant ML phylogeny.

Matthew P. Nelsen (564738)
Richard H. Ree (173236)
Corrie S. Moreau (111971)

November 2018

Dryad Supplementary File 15. Genera dropped from the vascular plant ML phylogeny

Dryad Supplementary File 11. Higher-level taxonomy of vascular plant genera used in analyses.

Nelsen, Matthew P.
Ree, Richard H.
Moreau, Corrie S.

November 2018

Dryad Supplementary File 11. Higher-level taxonomy of vascular plant genera used in analyses

RARGE II: An integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary. Plant Cell Physiol

Kenji Akiyama
Atsushi Kurotani
Kei Iida
Takashi Kuromori
Kazuo Shinozaki
Tetsuya Sakurai

August 2016

Arabidopsis thaliana is one of the most popular experimental plants. However, only 40 % of its genes...

RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary. Plant Cell Physiol

Kenji Akiyama
Atsushi Kurotani
Kei Iida
Takashi Kuromori
Kazuo Shinozaki
Tetsuya Sakurai

January 2014

Arabidopsis thaliana is one of the most popular experimental plants. However, only 40 % of its genes...

Dryad Supplementary File 16. Constrained ML phylogeny of vascular plants after genera in file genera removed.

Matthew P. Nelsen (564738)
Richard H. Ree (173236)
Corrie S. Moreau (111971)

November 2018

Dryad Supplementary File 16. Constrained ML phylogeny of vascular plants after genera in file genera...

Phenotype Ontologies Traversing All the Organisms (POTATO) workshop: 2nd edition.

Matentzoglu, N
Balhoff, J.P.
Bello, S.M.
Bradford, Y.M.
Carmody, L.C.
Cooper, L.D.
Laporte, M-A.

January 2020

The central purpose of this workshop was to bring together users and developers of phenotype ontolog...

Human_Phenotype_Ontology

Daria Doncevic (13270497)

September 2022

All files from the preprocessed Human Phenotype Ontology (HPO). *_annot.csv: Files containing annota...

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

Kohler, S.
Doelken, S.C.
Mungall, C.J.
Bauer, S.
Firth, H.V.
Bailleul-Forestier, I.
Black, G.C.M.
Brown, D.L.
Brudno, M.
Campbell, J.
FitzPatrick, D.R.
Eppig, J.T.
Jackson, A.P.
Freson, K.
Girdea, M.
Helbig, I.
Hurst, J.A.
Jahn, J.
Jackson, L.G.
Kelly, A.M.
Ledbetter, D.H.
Mansour, S.
Martin, C.L.
Moss, C.
Mumford, A.
Ouwehand, W.H.
Park, S.M.
Riggs, E.R.
Scott, R.H.
Sisodiya, S.
Vooren, S. van der
Wapner, R.J.
Wilkie, A.O.
Wright, C.F.
Silfhout, A.T. van
Leeuw, N. de
Vries, B. de
Washingthon, N.L.
Smith, C.L.
Westerfield, M.
Schofield, P.
Ruef, B.J.
Gkoutos, G.V.
Haendel, M.
Smedley, D.
Lewis, S.E.
Robinson, P.N.

January 2014

Contains fulltext : 136954.pdf (publisher's version ) (Open Access)The Human Pheno...

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Köhler, Sebastian
Doelken, Sandra C
Mungall, Christopher J
Bauer, Sebastian
Firth, Helen V
Bailleul-Forestier, Isabelle
Black, Graeme C M
Brown, Danielle L
Brudno, Michael
Campbell, Jennifer
Fitzpatrick, David R
Eppig, Janan T
Jackson, Andrew P
Freson, Kathleen
Girdea, Marta
Helbig, Ingo
Hurst, Jane A
Jähn, Johanna
Jackson, Laird G
Kelly, Anne M
Ledbetter, David H
Mansour, Sahar
Martin, Christa L
Moss, Celia
Mumford, Andrew
Ouwehand, Willem H
Park, Soo-Mi
Riggs, Erin Rooney
Scott, Richard H
Sisodiya, Sanjay
Vooren, Steven Van
Wapner, Ronald J
Wilkie, Andrew O M
Wright, Caroline F
Vulto-van Silfhout, Anneke T
Leeuw, Nicole de
de Vries, Bert B A
Washingthon, Nicole L
Smith, Cynthia
Westerfield, Monte
Schofield, Paul
Ruef, Barbara J
Gkoutos, Georgios V
Haendel, Melissa
Smedley, Damian
Lewis, Suzanna E
Robinson, Peter N

January 2014

The Human Phenotype Ontology (HPO) project, available at http://www.human-phenotype-ontology.org, pr...

Additional file 1 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Robert Hoehndorf (38206)
Mona Alshahrani (3576653)
Georgios Gkoutos (3576641)
George Gosline (3576644)
Quentin Groom (3576635)
Thomas Hamann (1618246)
Jens Kattge (159419)
Sylvia de Oliveira (3576647)
Marco Schmidt (3576638)
Soraya Sierra (452621)
Erik Smets (206615)
Rutger Vos (3504797)
Claus Weiland (3576650)

November 2016

Annotation of Floras 1. The file contains the manual annotation of Salacia erecta, Cucumeropsis mann...

Additional file 2 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Robert Hoehndorf (38206)
Mona Alshahrani (3576653)
Georgios Gkoutos (3576641)
George Gosline (3576644)
Quentin Groom (3576635)
Thomas Hamann (1618246)
Jens Kattge (159419)
Sylvia de Oliveira (3576647)
Marco Schmidt (3576638)
Soraya Sierra (452621)
Erik Smets (206615)
Rutger Vos (3504797)
Claus Weiland (3576650)

November 2016

Annotation of Floras 2. The file contains the manual annotation of Salacia erecta, Andropogon chinen...

Additional file 4 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Robert Hoehndorf (38206)
Mona Alshahrani (3576653)
Georgios Gkoutos (3576641)
George Gosline (3576644)
Quentin Groom (3576635)
Thomas Hamann (1618246)
Jens Kattge (159419)
Sylvia de Oliveira (3576647)
Marco Schmidt (3576638)
Soraya Sierra (452621)
Erik Smets (206615)
Rutger Vos (3504797)
Claus Weiland (3576650)

November 2016

Flora descriptions. The original descriptions of Salacia erecta, Andropogon chinensis, Oxalis, and A...

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Hoehndorf, Robert
Alshahrani, Mona
Gkoutos, Georgios V.
Gosline, George
Groom, Quentin
Hamann, Thomas
Kattge, Jens
Mota de Oliveira, Sylvia
Schmidt, Marco
Sierra, Soraya
Smets, Erik
Vos, Rutger A.
Weiland, Claus

January 2016

BACKGROUND: The systematic analysis of a large number of comparable plant trait data can support inv...

The flora phenotype ontology (FLOPO) : tool for integrating morphological traits and phenotypes of vascular plants

Hoehndorf, Robert
Alshahran, Mona
Gkoutos, Georgios V.
Gosline, George
Groom, Quentin
Hamann, Thomas
Kattge, Jens
Mota de Oliveira, Sylvia
Schmidt, Marco
Sierra, Soraya
Smets, Erik
Vos, Rutger Aldo
Weiland, Claus

November 2017

Background: The systematic analysis of a large number of comparable plant trait data can support inv...

The flora phenotype ontology (FLOPO):tool for integrating morphological traits and phenotypes of vascular plants

Hoehndorf, Robert
Alshahrani, Mona
Gkoutos, Georgios
Gosline, George
Groom, Quentin
Hamann, Thomas
Kattge, Jens
Mota de Oliveria, Sylvia
Schmidt, Marco
Sierra, Soraya
Smets, Erik
Vos, Rutger A.
Weiland, Claus

November 2016

BackgroundThe systematic analysis of a large number of comparable plant trait data can support inves...

Dryad Supplementary File 15. Genera dropped from the vascular plant ML phylogeny.

Matthew P. Nelsen (564738)
Richard H. Ree (173236)
Corrie S. Moreau (111971)

November 2018

Dryad Supplementary File 15. Genera dropped from the vascular plant ML phylogeny

Dryad Supplementary File 11. Higher-level taxonomy of vascular plant genera used in analyses.

Nelsen, Matthew P.
Ree, Richard H.
Moreau, Corrie S.

November 2018

Dryad Supplementary File 11. Higher-level taxonomy of vascular plant genera used in analyses

RARGE II: An integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary. Plant Cell Physiol

Kenji Akiyama
Atsushi Kurotani
Kei Iida
Takashi Kuromori
Kazuo Shinozaki
Tetsuya Sakurai

August 2016

Arabidopsis thaliana is one of the most popular experimental plants. However, only 40 % of its genes...

RARGE II: an integrated phenotype database of Arabidopsis mutant traits using a controlled vocabulary. Plant Cell Physiol

Kenji Akiyama
Atsushi Kurotani
Kei Iida
Takashi Kuromori
Kazuo Shinozaki
Tetsuya Sakurai

January 2014

Arabidopsis thaliana is one of the most popular experimental plants. However, only 40 % of its genes...

Dryad Supplementary File 16. Constrained ML phylogeny of vascular plants after genera in file genera removed.

Matthew P. Nelsen (564738)
Richard H. Ree (173236)
Corrie S. Moreau (111971)

November 2018

Dryad Supplementary File 16. Constrained ML phylogeny of vascular plants after genera in file genera...

Phenotype Ontologies Traversing All the Organisms (POTATO) workshop: 2nd edition.

Matentzoglu, N
Balhoff, J.P.
Bello, S.M.
Bradford, Y.M.
Carmody, L.C.
Cooper, L.D.
Laporte, M-A.

January 2020

The central purpose of this workshop was to bring together users and developers of phenotype ontolog...

Human_Phenotype_Ontology

Daria Doncevic (13270497)

September 2022

All files from the preprocessed Human Phenotype Ontology (HPO). *_annot.csv: Files containing annota...

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

Kohler, S.
Doelken, S.C.
Mungall, C.J.
Bauer, S.
Firth, H.V.
Bailleul-Forestier, I.
Black, G.C.M.
Brown, D.L.
Brudno, M.
Campbell, J.
FitzPatrick, D.R.
Eppig, J.T.
Jackson, A.P.
Freson, K.
Girdea, M.
Helbig, I.
Hurst, J.A.
Jahn, J.
Jackson, L.G.
Kelly, A.M.
Ledbetter, D.H.
Mansour, S.
Martin, C.L.
Moss, C.
Mumford, A.
Ouwehand, W.H.
Park, S.M.
Riggs, E.R.
Scott, R.H.
Sisodiya, S.
Vooren, S. van der
Wapner, R.J.
Wilkie, A.O.
Wright, C.F.
Silfhout, A.T. van
Leeuw, N. de
Vries, B. de
Washingthon, N.L.
Smith, C.L.
Westerfield, M.
Schofield, P.
Ruef, B.J.
Gkoutos, G.V.
Haendel, M.
Smedley, D.
Lewis, S.E.
Robinson, P.N.

January 2014

Contains fulltext : 136954.pdf (publisher's version ) (Open Access)The Human Pheno...

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Köhler, Sebastian
Doelken, Sandra C
Mungall, Christopher J
Bauer, Sebastian
Firth, Helen V
Bailleul-Forestier, Isabelle
Black, Graeme C M
Brown, Danielle L
Brudno, Michael
Campbell, Jennifer
Fitzpatrick, David R
Eppig, Janan T
Jackson, Andrew P
Freson, Kathleen
Girdea, Marta
Helbig, Ingo
Hurst, Jane A
Jähn, Johanna
Jackson, Laird G
Kelly, Anne M
Ledbetter, David H
Mansour, Sahar
Martin, Christa L
Moss, Celia
Mumford, Andrew
Ouwehand, Willem H
Park, Soo-Mi
Riggs, Erin Rooney
Scott, Richard H
Sisodiya, Sanjay
Vooren, Steven Van
Wapner, Ronald J
Wilkie, Andrew O M
Wright, Caroline F
Vulto-van Silfhout, Anneke T
Leeuw, Nicole de
de Vries, Bert B A
Washingthon, Nicole L
Smith, Cynthia
Westerfield, Monte
Schofield, Paul
Ruef, Barbara J
Gkoutos, Georgios V
Haendel, Melissa
Smedley, Damian
Lewis, Suzanna E
Robinson, Peter N

January 2014

The Human Phenotype Ontology (HPO) project, available at http://www.human-phenotype-ontology.org, pr...

Additional file 3 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Abstract

Extracted data

Additional file 3 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants

Abstract

Extracted data

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