Additional file 2: Table S2. of Genome-wide Association Mapping of Cold Tolerance Genes at the Seedling Stage in Rice

Additional file 2: Table S1. of The distribution of three candidate cold-resistant SNPs in six minorities in North China

Qiuyan Li (526038)
Kexian Dong (4848394)
Lidan Xu (291212)
Xueyuan Jia (4848397)
Jie Wu (10038)
Wenjing Sun (228791)
Xuelong Zhang (291205)
Songbin Fu (45499)

February 2018

The frequencies of three polymorphisms in 11 populations Table S2 The P values for rs7115739 compare...

Additional file 4: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S2. Mean phenotypic values of cultivars carrying different alleles in the significant associat...

Additional file 1: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S1. Selection of 203 temperate japonica from the 3000 sequenced rice accessions. Left is the ...

Additional file 2: Table S2. of Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla (3418586)
Víctor Rodríguez (2970339)
Amando Ordás (3418580)
Renaud Rincent (3418571)
Alain Charcosset (193923)
Catherine Giauffret (3418574)
Albrecht Melchinger (3312309)
Chris-Carolin Schön (193958)
Eva Bauer (167407)
Thomas Altmann (8259)
Dominique Brunel (76116)
Jesús Moreno-González (3418583)
Laura Campo (3418577)
Milena Ouzunova (42740)
Ángel Álvarez (2670541)
José Ruíz de Galarreta (3418589)
Jacques Laborde (452491)
Rosa Malvar (3418592)

June 2016

SNPs declared as significantly associated to cold tolerance-related traits, chromosome location, P-V...

Additional file 1: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

Jian Sun (1234941)
Luomiao Yang (5118575)
Jingguo Wang (564601)
Hualong Liu (5118581)
Hongliang Zheng (222648)
Dongwei Xie (4874992)
Minghui Zhang (298745)
Mingfang Feng (5118572)
Yan Jia (198590)
Hongwei Zhao (62620)
Detang Zou (5118578)

April 2018

Figure S1. Distributions of coverage depth on chromosomes of the sequencing samples. X-axe indicates...

Table_2_Genome-Wide Association Mapping for Cold Tolerance in a Core Collection of Rice (Oryza sativa L.) Landraces by Using High-Density Single Nucleotide Polymorphism Markers From Specific-Locus Amplified Fragment Sequencing.docx

Jiayu Song (5461925)
Jinqun Li (5461928)
Jian Sun (1234941)
Tao Hu (422014)
Aiting Wu (5461919)
Sitong Liu (3750979)
Wenjia Wang (797112)
Dianrong Ma (5461922)
Minghui Zhao (558468)

June 2018

<p>Understanding the genetic mechanism of cold tolerance in rice is important to mine elite genes fr...

Additional file 2: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

Jian Sun (1234941)
Luomiao Yang (5118575)
Jingguo Wang (564601)
Hualong Liu (5118581)
Hongliang Zheng (222648)
Dongwei Xie (4874992)
Minghui Zhang (298745)
Mingfang Feng (5118572)
Yan Jia (198590)
Hongwei Zhao (62620)
Detang Zou (5118578)

April 2018

Table S1. The PSST of T-pool and S-pool. Table S2. Sequences of specific primers for PSST candidate ...

Table_1_Genome-Wide Association Mapping for Cold Tolerance in a Core Collection of Rice (Oryza sativa L.) Landraces by Using High-Density Single Nucleotide Polymorphism Markers From Specific-Locus Amplified Fragment Sequencing.doc

Jiayu Song (5461925)
Jinqun Li (5461928)
Jian Sun (1234941)
Tao Hu (422014)
Aiting Wu (5461919)
Sitong Liu (3750979)
Wenjia Wang (797112)
Dianrong Ma (5461922)
Minghui Zhao (558468)

June 2018

<p>Understanding the genetic mechanism of cold tolerance in rice is important to mine elite genes fr...

Additional file 2: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S2. List of rice accessions and phenotypic data used for association mapping. The average valu...

Additional file 1: Table S1. of Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla (3418586)
Víctor Rodríguez (2970339)
Amando Ordás (3418580)
Renaud Rincent (3418571)
Alain Charcosset (193923)
Catherine Giauffret (3418574)
Albrecht Melchinger (3312309)
Chris-Carolin Schön (193958)
Eva Bauer (167407)
Thomas Altmann (8259)
Dominique Brunel (76116)
Jesús Moreno-González (3418583)
Laura Campo (3418577)
Milena Ouzunova (42740)
Ángel Álvarez (2670541)
José Ruíz de Galarreta (3418589)
Jacques Laborde (452491)
Rosa Malvar (3418592)

June 2016

Summary of the compression mixed linear model analysis for cold tolerance traits in two panels of de...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 2: of Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

Risper Magwa (3414992)
Hu Zhao (425380)
Yongzhong Xing (34641)

January 2016

List of twenty most dormant accessions that retained their dormancy in After-ripened seeds. This tab...

Additional file 1: of Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

Risper Magwa (3414992)
Hu Zhao (425380)
Yongzhong Xing (34641)

January 2016

Neighbor-joining tree of the 350 rice accessions with reference to GP: A neighbor-joining tree showi...

Additional file 4: of Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

Risper Magwa (3414992)
Hu Zhao (425380)
Yongzhong Xing (34641)

January 2016

Non-synonymous SNPs in Sdr4 and GA2ox3 genes in 350 accessions used in our study. This file contains...

Additional file 2: Table S2 of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

Dan Zhu (139675)
Houxiang Kang (263266)
Zhiqiang Li (102723)
Minghao Liu (3431642)
Xiaoli Zhu (767993)
Yue Wang (65477)
Dan Wang (34472)
Zhilong Wang (248924)
Wende Liu (232617)
Guo-Liang Wang (228171)

August 2016

Forty rice cultivars that were resistant in all three blast nurseries in the field. (XLSX 14 kb

Additional file 2: Table S1. of The distribution of three candidate cold-resistant SNPs in six minorities in North China

Qiuyan Li (526038)
Kexian Dong (4848394)
Lidan Xu (291212)
Xueyuan Jia (4848397)
Jie Wu (10038)
Wenjing Sun (228791)
Xuelong Zhang (291205)
Songbin Fu (45499)

February 2018

The frequencies of three polymorphisms in 11 populations Table S2 The P values for rs7115739 compare...

Additional file 4: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S2. Mean phenotypic values of cultivars carrying different alleles in the significant associat...

Additional file 1: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S1. Selection of 203 temperate japonica from the 3000 sequenced rice accessions. Left is the ...

Additional file 2: Table S2. of Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla (3418586)
Víctor Rodríguez (2970339)
Amando Ordás (3418580)
Renaud Rincent (3418571)
Alain Charcosset (193923)
Catherine Giauffret (3418574)
Albrecht Melchinger (3312309)
Chris-Carolin Schön (193958)
Eva Bauer (167407)
Thomas Altmann (8259)
Dominique Brunel (76116)
Jesús Moreno-González (3418583)
Laura Campo (3418577)
Milena Ouzunova (42740)
Ángel Álvarez (2670541)
José Ruíz de Galarreta (3418589)
Jacques Laborde (452491)
Rosa Malvar (3418592)

June 2016

SNPs declared as significantly associated to cold tolerance-related traits, chromosome location, P-V...

Additional file 1: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

Jian Sun (1234941)
Luomiao Yang (5118575)
Jingguo Wang (564601)
Hualong Liu (5118581)
Hongliang Zheng (222648)
Dongwei Xie (4874992)
Minghui Zhang (298745)
Mingfang Feng (5118572)
Yan Jia (198590)
Hongwei Zhao (62620)
Detang Zou (5118578)

April 2018

Figure S1. Distributions of coverage depth on chromosomes of the sequencing samples. X-axe indicates...

Table_2_Genome-Wide Association Mapping for Cold Tolerance in a Core Collection of Rice (Oryza sativa L.) Landraces by Using High-Density Single Nucleotide Polymorphism Markers From Specific-Locus Amplified Fragment Sequencing.docx

Jiayu Song (5461925)
Jinqun Li (5461928)
Jian Sun (1234941)
Tao Hu (422014)
Aiting Wu (5461919)
Sitong Liu (3750979)
Wenjia Wang (797112)
Dianrong Ma (5461922)
Minghui Zhao (558468)

June 2018

<p>Understanding the genetic mechanism of cold tolerance in rice is important to mine elite genes fr...

Additional file 2: of Identification of a cold-tolerant locus in rice (Oryza sativa L.) using bulked segregant analysis with a next-generation sequencing strategy

Jian Sun (1234941)
Luomiao Yang (5118575)
Jingguo Wang (564601)
Hualong Liu (5118581)
Hongliang Zheng (222648)
Dongwei Xie (4874992)
Minghui Zhang (298745)
Mingfang Feng (5118572)
Yan Jia (198590)
Hongwei Zhao (62620)
Detang Zou (5118578)

April 2018

Table S1. The PSST of T-pool and S-pool. Table S2. Sequences of specific primers for PSST candidate ...

Table_1_Genome-Wide Association Mapping for Cold Tolerance in a Core Collection of Rice (Oryza sativa L.) Landraces by Using High-Density Single Nucleotide Polymorphism Markers From Specific-Locus Amplified Fragment Sequencing.doc

Jiayu Song (5461925)
Jinqun Li (5461928)
Jian Sun (1234941)
Tao Hu (422014)
Aiting Wu (5461919)
Sitong Liu (3750979)
Wenjia Wang (797112)
Dianrong Ma (5461922)
Minghui Zhao (558468)

June 2018

<p>Understanding the genetic mechanism of cold tolerance in rice is important to mine elite genes fr...

Additional file 2: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S2. List of rice accessions and phenotypic data used for association mapping. The average valu...

Additional file 1: Table S1. of Association mapping for cold tolerance in two large maize inbred panels

Pedro Revilla (3418586)
Víctor Rodríguez (2970339)
Amando Ordás (3418580)
Renaud Rincent (3418571)
Alain Charcosset (193923)
Catherine Giauffret (3418574)
Albrecht Melchinger (3312309)
Chris-Carolin Schön (193958)
Eva Bauer (167407)
Thomas Altmann (8259)
Dominique Brunel (76116)
Jesús Moreno-González (3418583)
Laura Campo (3418577)
Milena Ouzunova (42740)
Ángel Álvarez (2670541)
José Ruíz de Galarreta (3418589)
Jacques Laborde (452491)
Rosa Malvar (3418592)

June 2016

Summary of the compression mixed linear model analysis for cold tolerance traits in two panels of de...

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 2: of Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

Risper Magwa (3414992)
Hu Zhao (425380)
Yongzhong Xing (34641)

January 2016

List of twenty most dormant accessions that retained their dormancy in After-ripened seeds. This tab...

Additional file 1: of Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

Risper Magwa (3414992)
Hu Zhao (425380)
Yongzhong Xing (34641)

January 2016

Neighbor-joining tree of the 350 rice accessions with reference to GP: A neighbor-joining tree showi...

Additional file 4: of Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

Risper Magwa (3414992)
Hu Zhao (425380)
Yongzhong Xing (34641)

January 2016

Non-synonymous SNPs in Sdr4 and GA2ox3 genes in 350 accessions used in our study. This file contains...

Additional file 2: Table S2 of A Genome-Wide Association Study of Field Resistance to Magnaporthe Oryzae in Rice

Dan Zhu (139675)
Houxiang Kang (263266)
Zhiqiang Li (102723)
Minghao Liu (3431642)
Xiaoli Zhu (767993)
Yue Wang (65477)
Dan Wang (34472)
Zhilong Wang (248924)
Wende Liu (232617)
Guo-Liang Wang (228171)

August 2016

Forty rice cultivars that were resistant in all three blast nurseries in the field. (XLSX 14 kb

Additional file 2: Table S1. of The distribution of three candidate cold-resistant SNPs in six minorities in North China

Qiuyan Li (526038)
Kexian Dong (4848394)
Lidan Xu (291212)
Xueyuan Jia (4848397)
Jie Wu (10038)
Wenjing Sun (228791)
Xuelong Zhang (291205)
Songbin Fu (45499)

February 2018

The frequencies of three polymorphisms in 11 populations Table S2 The P values for rs7115739 compare...

Additional file 4: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S2. Mean phenotypic values of cultivars carrying different alleles in the significant associat...

Additional file 1: of Genome-wide association study of seedling stage salinity tolerance in temperate japonica rice germplasm

Dariga Batayeva (4733313)
Benedick Labaco (4733304)
Changrong Ye (4733295)
Xiaolin Li (397893)
Bakdaulet Usenbekov (4733310)
Aiman Rysbekova (4733298)
Gulzhamal Dyuskalieva (4733301)
Georgina Vergara (4733307)
Russell Reinke (509040)
Hei Leung (93614)

January 2018

Figure S1. Selection of 203 temperate japonica from the 3000 sequenced rice accessions. Left is the ...

Additional file 2: Table S2. of Genome-wide Association Mapping of Cold Tolerance Genes at the Seedling Stage in Rice

Abstract

Extracted data

Additional file 2: Table S2. of Genome-wide Association Mapping of Cold Tolerance Genes at the Seedling Stage in Rice

Abstract

Extracted data

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