Differentially expressed transcripts, with a fold change higher than 2, in at least one of the pairwise comparisons between embryos and megagametophytes. This file includes a list of all the up-regulated transcripts in embryos and megagametophytes respectively, resulting from the pairwise comparisons E1 vs M1, E2 vs M2, E3DO vs M3, E3SU vs M3 and E4 vs M4. Transcript name (Transcript ID) and the best match against TAIR database (At locus ID, At name and At annotation) are shown. (XLSX 626 kb
The functional annotation of P. pinaster transcriptome done with Blast2GO generated different charts...
Distribution of the sequence similarities (percentage) that were calculated for the BLAST hits. (PNG...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
Differentially expressed transcripts in embryos and megagametophytes at different stages of seed dev...
Differentially expressed transcripts (FC > 2; RPKM > 10) between consecutive megagametophyte develop...
Differentially expressed transcripts (FC > 2; RPKM > 10) between consecutive developmental stages du...
Figure S2. Number of differentially expressed transcripts (DETs) with a fold-change greater than 2 (...
Table S5. List of transcripts selected for qRT-PCR analyses. Table S6. Validation of the RNA-seq exp...
Figure S5. Distribution of up-regulated TF family members in embryos and megagametophytes. Presented...
Distribution of species to which most transcripts were aligned when only considering the Top-BLAST h...
Background: Characterization of the expression and function of genes regulating embryo development i...
Background: Characterization of the expression and function of genes regulating embryo development i...
Background: Characterization of the expression and function of genes regulating embryo development i...
Transcripts with BRHs validated by relative RT-qPCR. The order of preference for annotating each P. ...
InterProScan (IPS) results showing the number of transcripts with and without IPS as well as with GO...
The functional annotation of P. pinaster transcriptome done with Blast2GO generated different charts...
Distribution of the sequence similarities (percentage) that were calculated for the BLAST hits. (PNG...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...
Differentially expressed transcripts in embryos and megagametophytes at different stages of seed dev...
Differentially expressed transcripts (FC > 2; RPKM > 10) between consecutive megagametophyte develop...
Differentially expressed transcripts (FC > 2; RPKM > 10) between consecutive developmental stages du...
Figure S2. Number of differentially expressed transcripts (DETs) with a fold-change greater than 2 (...
Table S5. List of transcripts selected for qRT-PCR analyses. Table S6. Validation of the RNA-seq exp...
Figure S5. Distribution of up-regulated TF family members in embryos and megagametophytes. Presented...
Distribution of species to which most transcripts were aligned when only considering the Top-BLAST h...
Background: Characterization of the expression and function of genes regulating embryo development i...
Background: Characterization of the expression and function of genes regulating embryo development i...
Background: Characterization of the expression and function of genes regulating embryo development i...
Transcripts with BRHs validated by relative RT-qPCR. The order of preference for annotating each P. ...
InterProScan (IPS) results showing the number of transcripts with and without IPS as well as with GO...
The functional annotation of P. pinaster transcriptome done with Blast2GO generated different charts...
Distribution of the sequence similarities (percentage) that were calculated for the BLAST hits. (PNG...
REVIGO TreeMap representation of GO terms enrichment analysis associated with biological process GO ...