Highest percentage of overlap between α (CBS) and γ (PCF) – gains and losses. Table S4A demonstrates the highest percentage of overlap between α (CBS) and γ (PCF) for amplification GISTIC focal peaks of female cancers. Table S4B shows the highest overlap of α and γ for deletion GISTIC focal peaks. (XLSX 12 kb
The 207 tumor suppress genes (TSGs) with frequent copy number losses (CNLs). (XLSX 18 kb
Table S3. Summary of clonality tests for the gene expression microarray cohort (n = 7). (XLSX 14 kb
List of genes selected for copy number validation of 9 focal rearrangements using real-time quantita...
GISTIC focal peaks for female cancers – gains and losses. Table S3A shows the number of focal peaks ...
GISTIC focal peaks for simulated data – gains and losses. Table S2A exemplifies the number of focal ...
Focal peaks of GISTIC for female cancers based on PCF-segmented input data (amplifications and delet...
Focal peaks of GISTIC for female cancers based on CBS-segmented data (amplifications and deletions)....
Arm-level significant table for four studied cancers. Table S7 illustrates the significant arm-level...
Top networks, biological functions, and top canonical pathways (CBS and PCF) - gains and losses. Tab...
Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...
Genomic Identification of Significant Targets (GISTIC) outputs for Circular Binary Segmentation (CBS...
Sample information of 587 ovarian patients and normal tissue samples with Copy number variation and ...
Copy number variation (CNV) GISTIC The Cancer Genome Atlas (TCGA). List of significant (q <0.25) amp...
Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...
Figure S2. Comparison of biological pathway between IBC and non-IBC in four subgroups. (a) The perce...
The 207 tumor suppress genes (TSGs) with frequent copy number losses (CNLs). (XLSX 18 kb
Table S3. Summary of clonality tests for the gene expression microarray cohort (n = 7). (XLSX 14 kb
List of genes selected for copy number validation of 9 focal rearrangements using real-time quantita...
GISTIC focal peaks for female cancers – gains and losses. Table S3A shows the number of focal peaks ...
GISTIC focal peaks for simulated data – gains and losses. Table S2A exemplifies the number of focal ...
Focal peaks of GISTIC for female cancers based on PCF-segmented input data (amplifications and delet...
Focal peaks of GISTIC for female cancers based on CBS-segmented data (amplifications and deletions)....
Arm-level significant table for four studied cancers. Table S7 illustrates the significant arm-level...
Top networks, biological functions, and top canonical pathways (CBS and PCF) - gains and losses. Tab...
Figure S3. DNA copy number alterations in the IBC cohort. The genes with DNA copy number alterations...
Genomic Identification of Significant Targets (GISTIC) outputs for Circular Binary Segmentation (CBS...
Sample information of 587 ovarian patients and normal tissue samples with Copy number variation and ...
Copy number variation (CNV) GISTIC The Cancer Genome Atlas (TCGA). List of significant (q <0.25) amp...
Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...
Figure S2. Comparison of biological pathway between IBC and non-IBC in four subgroups. (a) The perce...
The 207 tumor suppress genes (TSGs) with frequent copy number losses (CNLs). (XLSX 18 kb
Table S3. Summary of clonality tests for the gene expression microarray cohort (n = 7). (XLSX 14 kb
List of genes selected for copy number validation of 9 focal rearrangements using real-time quantita...