Gene membership of transcriptional modules. The table shows gene identifiers and names in FlyBase format, the module to which the gene was assigned, and whether the module exhibited significantly altered network structure (differential coexpression, i.e., TRUE) between axenic flies and gnotobiotic flies. Significant differential coexpression can indicate changes within a module or between two modules, see Fig. 1. (CSV 457 kb
Estimated regions of linkage disequilibrium and associations between SNPs and expression level in re...
List of genes with tissue-specific differential expression. A.csv file with the list of genes that s...
Transcription profiles of synaptic genes. A .pdf file with a graph showing the transcription profile...
GO enrichment amongst microbiota-dependent transcriptional modules. Enrichment of GO terms in microb...
Frequency of data permutations with dispersion statistic greater than observed, within individual mo...
Read counts per gene. Each column denotes a different sample. See Table S4 for line name information...
Variance-stabilized read counts. Dataset S1 with a variance-stabilising transformation applied using...
Gene ontology analysis of 31 differentially expressed genes shared among all transgenic strains in l...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
Background: Resident microorganisms (microbiota) have far-reaching effects on the biology of their...
Gene ontology analysis of differentially expressed genes in transgenic strains. (DOCX 27Â kb
Full network of the analysed FlyBase Gene Group data visualised by Cytoscape. Cytoscape session file...
BACKGROUND: Resident microorganisms (microbiota) have far-reaching effects on the biology of their a...
Table S1. Differential gene expression from Cuffdiff: Upregulated genes in acclimated flies. Table S...
Resolution of conserved sequence clusters is enhanced by evolutionary flexibility in their flanking ...
Estimated regions of linkage disequilibrium and associations between SNPs and expression level in re...
List of genes with tissue-specific differential expression. A.csv file with the list of genes that s...
Transcription profiles of synaptic genes. A .pdf file with a graph showing the transcription profile...
GO enrichment amongst microbiota-dependent transcriptional modules. Enrichment of GO terms in microb...
Frequency of data permutations with dispersion statistic greater than observed, within individual mo...
Read counts per gene. Each column denotes a different sample. See Table S4 for line name information...
Variance-stabilized read counts. Dataset S1 with a variance-stabilising transformation applied using...
Gene ontology analysis of 31 differentially expressed genes shared among all transgenic strains in l...
List of all significant differentially expressed genes. FBgn: Flybase symbol; Symbol _mel: symbol of...
Background: Resident microorganisms (microbiota) have far-reaching effects on the biology of their...
Gene ontology analysis of differentially expressed genes in transgenic strains. (DOCX 27Â kb
Full network of the analysed FlyBase Gene Group data visualised by Cytoscape. Cytoscape session file...
BACKGROUND: Resident microorganisms (microbiota) have far-reaching effects on the biology of their a...
Table S1. Differential gene expression from Cuffdiff: Upregulated genes in acclimated flies. Table S...
Resolution of conserved sequence clusters is enhanced by evolutionary flexibility in their flanking ...
Estimated regions of linkage disequilibrium and associations between SNPs and expression level in re...
List of genes with tissue-specific differential expression. A.csv file with the list of genes that s...
Transcription profiles of synaptic genes. A .pdf file with a graph showing the transcription profile...