Additional file 7: Table S1. of Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B viruses

Additional file 3: of Epidemiological and genetic characterization of pH1N1 and H3N2 influenza viruses circulated in MENA region during 2009â2017

Hebah Al Khatib (3429923)
Asmaa Al Thani (6578159)
Imed Gallouzi (6578162)
Hadi Yassine (6578165)

April 2019

Table S2. Accumulation of amino acid substitutions in N1 protein of pH1N1 viruses of during 2009â2...

Additional file 7: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

CDRH2 sequence in large IGHV1-69 -expressing V H clonotypes. Sequence logos [55] of CDRH2 (IMGT numb...

Additional file 4: of Analysis of influenza B virus lineages and the HA1 domain of its hemagglutinin gene in Guangzhou, southern China, during 2016

Feng Ye (173489)
Xiao-juan Chen (5967443)
Wen-da Guan (5967446)
Si-hua Pan (5967452)
Zi-feng Yang (5967458)
Rong-chang Chen (531370)

November 2018

Table S2. Screening for NA mutations in influenza B virus isolates at sites known to confer resistan...

Additional file 6: Figure S6. of Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B viruses

Haifen Chen (3422747)
Xinrui Zhou (3422750)
Jie Zheng (31208)
Chee-Keong Kwoh (279664)

December 2016

Network of co-mutation sites based on H3N2 sequences from 1968 to 2002 (same dataset as in Xia et al...

Additional file 1: of Rapid evolution of the PB1-F2 virulence protein expressed by human seasonal H3N2 influenza viruses reduces inflammatory responses to infection

Julie McAuley (4383190)
Yi-Mo Deng (215993)
Brad Gilbertson (394938)
Charley Mackenzie-Kludas (4383187)
Ian Barr (179772)
Lorena Brown (143164)

August 2017

Figure S1. Comparison of the predicted amino acid sequence of PB1-F2 proteins expressed by H3N2 viru...

Additional file 1: of Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses

Xinrui Zhou (3422750)
Jie Zheng (31208)
Fransiskus Ivan (5198375)
Rui Yin (3605807)
Shoba Ranganathan (5367)
Vincent Chow (404521)
Chee-Keong Kwoh (279664)

May 2018

Phylogenetic trees of influenza A/H7N9. Time-scale phylogenetic trees of PB2, PB1, PA, HA, NP, NA, M...

Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B viruses

Chen, Haifen
Zhou, Xinrui
Zheng, Jie
Kwoh, Chee-Keong

January 2016

Background: The human influenza viruses undergo rapid evolution (especially in hemagglutinin (HA), a...

Additional file 1: of Multiple amino acid substitutions involved in the adaption of three avian-origin H7N9 influenza viruses in mice

Jianru Qin (5704658)
Ouyang Peng (6187814)
Xiaoting Shen (4959799)
Lang Gong (5704655)
Chunyi Xue (5073731)
Yongchang Cao (5073734)

January 2019

Table S1. GeneBank accession numbers corresponding to the three H7N9 viruses. (DOCX 15 kb

Additional file 1: Table S1a. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Bidhan Ch. Bera (4383163)
Nitin Virmani (749243)
Naveen Kumar (66313)
Taruna Anand (828898)
S Pavulraj (4383166)
Adam Rash (3493286)
Debra Elton (29877)
Nicola Rash (4383160)
Sandeep Bhatia (2633815)
Richa Sood (2633812)
Raj Singh (103123)
Bhupendra Tripathi (4383157)

August 2017

Consensus amino acid changes in the predicted PA protein compared to Richmond/1/07; Table S1b. Conse...

Table_3_Potential Pandemic of H7N9 Avian Influenza A Virus in Human.DOCX

Zhiqing Pu (6004910)
Dan Xiang (381807)
Xiaobing Li (291454)
Tingting Luo (2744662)
Xuejuan Shen (4823982)
Robert W. Murphy (102800)
Ming Liao (123342)
Yongyi Shen (3315195)

November 2018

Since 2013, the H7N9 avian influenza A virus (AIV) has caused human infections and to the extent of ...

Additional file 1: of Epidemiological and genetic characterization of pH1N1 and H3N2 influenza viruses circulated in MENA region during 2009â2017

Hebah Al Khatib (3429923)
Asmaa Al Thani (6578159)
Imed Gallouzi (6578162)
Hadi Yassine (6578165)

April 2019

Table S1. Accession numbers of pH1N1 and H3N2 vaccine and representative strains as obtained from NC...

Additional file 4: of Epidemiological and genetic characterization of pH1N1 and H3N2 influenza viruses circulated in MENA region during 2009â2017

Hebah Al Khatib (3429923)
Asmaa Al Thani (6578159)
Imed Gallouzi (6578162)
Hadi Yassine (6578165)

April 2019

Table S3. Accumulation of amino acid substitutions in NA protein of in N2 protein of H3N2 viruses of...

Table_1_Potential Pandemic of H7N9 Avian Influenza A Virus in Human.DOCX

Zhiqing Pu (6004910)
Dan Xiang (381807)
Xiaobing Li (291454)
Tingting Luo (2744662)
Xuejuan Shen (4823982)
Robert W. Murphy (102800)
Ming Liao (123342)
Yongyi Shen (3315195)

November 2018

Since 2013, the H7N9 avian influenza A virus (AIV) has caused human infections and to the extent of ...

Table_2_Potential Pandemic of H7N9 Avian Influenza A Virus in Human.DOCX

Zhiqing Pu (6004910)
Dan Xiang (381807)
Xiaobing Li (291454)
Tingting Luo (2744662)
Xuejuan Shen (4823982)
Robert W. Murphy (102800)
Ming Liao (123342)
Yongyi Shen (3315195)

November 2018

Since 2013, the H7N9 avian influenza A virus (AIV) has caused human infections and to the extent of ...

Additional file 9: Table S7. of Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments

Fatemeh Kargarfard (3412910)
Ashkan Sami (3412904)
Manijeh Mohammadi-Dehcheshmeh (3412907)
Esmaeil Ebrahimie (112083)

November 2016

Listing the rules extracted from NS2 protein of influenza A in identification of host ranges. (DOCX ...

Additional file 3: of Epidemiological and genetic characterization of pH1N1 and H3N2 influenza viruses circulated in MENA region during 2009â2017

Hebah Al Khatib (3429923)
Asmaa Al Thani (6578159)
Imed Gallouzi (6578162)
Hadi Yassine (6578165)

April 2019

Table S2. Accumulation of amino acid substitutions in N1 protein of pH1N1 viruses of during 2009â2...

Additional file 7: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

CDRH2 sequence in large IGHV1-69 -expressing V H clonotypes. Sequence logos [55] of CDRH2 (IMGT numb...

Additional file 4: of Analysis of influenza B virus lineages and the HA1 domain of its hemagglutinin gene in Guangzhou, southern China, during 2016

Feng Ye (173489)
Xiao-juan Chen (5967443)
Wen-da Guan (5967446)
Si-hua Pan (5967452)
Zi-feng Yang (5967458)
Rong-chang Chen (531370)

November 2018

Table S2. Screening for NA mutations in influenza B virus isolates at sites known to confer resistan...

Additional file 6: Figure S6. of Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B viruses

Haifen Chen (3422747)
Xinrui Zhou (3422750)
Jie Zheng (31208)
Chee-Keong Kwoh (279664)

December 2016

Network of co-mutation sites based on H3N2 sequences from 1968 to 2002 (same dataset as in Xia et al...

Additional file 1: of Rapid evolution of the PB1-F2 virulence protein expressed by human seasonal H3N2 influenza viruses reduces inflammatory responses to infection

Julie McAuley (4383190)
Yi-Mo Deng (215993)
Brad Gilbertson (394938)
Charley Mackenzie-Kludas (4383187)
Ian Barr (179772)
Lorena Brown (143164)

August 2017

Figure S1. Comparison of the predicted amino acid sequence of PB1-F2 proteins expressed by H3N2 viru...

Additional file 1: of Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses

Xinrui Zhou (3422750)
Jie Zheng (31208)
Fransiskus Ivan (5198375)
Rui Yin (3605807)
Shoba Ranganathan (5367)
Vincent Chow (404521)
Chee-Keong Kwoh (279664)

May 2018

Phylogenetic trees of influenza A/H7N9. Time-scale phylogenetic trees of PB2, PB1, PA, HA, NP, NA, M...

Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B viruses

Chen, Haifen
Zhou, Xinrui
Zheng, Jie
Kwoh, Chee-Keong

January 2016

Background: The human influenza viruses undergo rapid evolution (especially in hemagglutinin (HA), a...

Additional file 1: of Multiple amino acid substitutions involved in the adaption of three avian-origin H7N9 influenza viruses in mice

Jianru Qin (5704658)
Ouyang Peng (6187814)
Xiaoting Shen (4959799)
Lang Gong (5704655)
Chunyi Xue (5073731)
Yongchang Cao (5073734)

January 2019

Table S1. GeneBank accession numbers corresponding to the three H7N9 viruses. (DOCX 15 kb

Additional file 1: Table S1a. of Genetic and codon usage bias analyses of polymerase genes of equine influenza virus and its relation to evolution

Bidhan Ch. Bera (4383163)
Nitin Virmani (749243)
Naveen Kumar (66313)
Taruna Anand (828898)
S Pavulraj (4383166)
Adam Rash (3493286)
Debra Elton (29877)
Nicola Rash (4383160)
Sandeep Bhatia (2633815)
Richa Sood (2633812)
Raj Singh (103123)
Bhupendra Tripathi (4383157)

August 2017

Consensus amino acid changes in the predicted PA protein compared to Richmond/1/07; Table S1b. Conse...

Table_3_Potential Pandemic of H7N9 Avian Influenza A Virus in Human.DOCX

Zhiqing Pu (6004910)
Dan Xiang (381807)
Xiaobing Li (291454)
Tingting Luo (2744662)
Xuejuan Shen (4823982)
Robert W. Murphy (102800)
Ming Liao (123342)
Yongyi Shen (3315195)

November 2018

Since 2013, the H7N9 avian influenza A virus (AIV) has caused human infections and to the extent of ...

Additional file 1: of Epidemiological and genetic characterization of pH1N1 and H3N2 influenza viruses circulated in MENA region during 2009â2017

Hebah Al Khatib (3429923)
Asmaa Al Thani (6578159)
Imed Gallouzi (6578162)
Hadi Yassine (6578165)

April 2019

Table S1. Accession numbers of pH1N1 and H3N2 vaccine and representative strains as obtained from NC...

Additional file 4: of Epidemiological and genetic characterization of pH1N1 and H3N2 influenza viruses circulated in MENA region during 2009â2017

Hebah Al Khatib (3429923)
Asmaa Al Thani (6578159)
Imed Gallouzi (6578162)
Hadi Yassine (6578165)

April 2019

Table S3. Accumulation of amino acid substitutions in NA protein of in N2 protein of H3N2 viruses of...

Table_1_Potential Pandemic of H7N9 Avian Influenza A Virus in Human.DOCX

Zhiqing Pu (6004910)
Dan Xiang (381807)
Xiaobing Li (291454)
Tingting Luo (2744662)
Xuejuan Shen (4823982)
Robert W. Murphy (102800)
Ming Liao (123342)
Yongyi Shen (3315195)

November 2018

Since 2013, the H7N9 avian influenza A virus (AIV) has caused human infections and to the extent of ...

Table_2_Potential Pandemic of H7N9 Avian Influenza A Virus in Human.DOCX

Zhiqing Pu (6004910)
Dan Xiang (381807)
Xiaobing Li (291454)
Tingting Luo (2744662)
Xuejuan Shen (4823982)
Robert W. Murphy (102800)
Ming Liao (123342)
Yongyi Shen (3315195)

November 2018

Since 2013, the H7N9 avian influenza A virus (AIV) has caused human infections and to the extent of ...

Additional file 9: Table S7. of Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments

Fatemeh Kargarfard (3412910)
Ashkan Sami (3412904)
Manijeh Mohammadi-Dehcheshmeh (3412907)
Esmaeil Ebrahimie (112083)

November 2016

Listing the rules extracted from NS2 protein of influenza A in identification of host ranges. (DOCX ...

Additional file 3: of Epidemiological and genetic characterization of pH1N1 and H3N2 influenza viruses circulated in MENA region during 2009â2017

Hebah Al Khatib (3429923)
Asmaa Al Thani (6578159)
Imed Gallouzi (6578162)
Hadi Yassine (6578165)

April 2019

Table S2. Accumulation of amino acid substitutions in N1 protein of pH1N1 viruses of during 2009â2...

Additional file 7: of Longitudinal analysis of the peripheral B cell repertoire reveals unique effects of immunization with a new influenza virus strain

Bernardo Cortina-Ceballos (3172569)
Elizabeth Godoy-Lozano (3578762)
Juan Téllez-Sosa (429748)
Marbella Ovilla-Muñoz (2522470)
Hugo Sámano-Sánchez (3578756)
Andrés Aguilar-Salgado (3578765)
Rosa Gómez-Barreto (3578759)
Humberto Valdovinos-Torres (429750)
Irma López-Martínez (606285)
Rodrigo Aparicio-Antonio (2578711)
Mario Rodríguez (406354)
Jesús Martínez-Barnetche (429756)

November 2015

CDRH2 sequence in large IGHV1-69 -expressing V H clonotypes. Sequence logos [55] of CDRH2 (IMGT numb...

Additional file 4: of Analysis of influenza B virus lineages and the HA1 domain of its hemagglutinin gene in Guangzhou, southern China, during 2016

Feng Ye (173489)
Xiao-juan Chen (5967443)
Wen-da Guan (5967446)
Si-hua Pan (5967452)
Zi-feng Yang (5967458)
Rong-chang Chen (531370)

November 2018

Table S2. Screening for NA mutations in influenza B virus isolates at sites known to confer resistan...

Additional file 7: Table S1. of Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B viruses

Abstract

Extracted data

Additional file 7: Table S1. of Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B viruses

Abstract

Extracted data

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