<p>C: the number of reference genes in the category; O: the number of genes in the gene set and also in the category; E: the expected number in the category; R: ratio of enrichment; rawP: p value from hypergeometric test; adjP: p value adjusted by the multiple test adjustment. Please be aware that “Up or Down” only refers to whether the genes associated with listed pathways were up or down-regulated. It does not necessarily mean the pathway was activated or inhibited.</p
<p>(A) Significant pathways of up-regulated genes. (B) Significant pathways of down-regulated genes....
(a) Curve demonstrating expression pattern for early upregulated (red) and downregulated (blue) gene...
*<p>The number of differentially expressed genes (DEGs) that belong to a KEGG pathway.</p>**<p>The t...
*<p>: The gene number on the pathway, according to databases.</p>†<p>: The number of genes, which we...
<p>In the table, the gene count denotes the number of stage-dependent genes observed in each pathway...
<p>“P value” indicates the enrichment p-value of the Pathway ID determined by the Fisher's exact tes...
(A) GO terms of downregulated target genes. (B) GO terms of upregulated target genes. (C) Pathways o...
Pathway analysis of common down-regulated differentially expressed genes (DEGs) in GSE76092 and GSE4...
<p>(A) The significant GO category for up-regulated genes between the HP and HR groups. (B) The sign...
<p>(A) The top 20 pathways for the down-regulated genes. (B) The top 20 pathways for the up-regulate...
<p>Tables are organized in descending order of the number of matched genes and likelihood to affect ...
(A) The most 10 significant pathways and the DEGs count involved in these pathways of down-regulated...
<p>Red bars represent the persistently upregulated KEGG pathway enrichment significance levels, and ...
<p>(A) Graphs represent the number of genes differentially up- or down- regulated for each isolate c...
*<p>The number of differentially expressed genes (DEGs) that belong to a KEGG pathway.</p>**<p>The t...
<p>(A) Significant pathways of up-regulated genes. (B) Significant pathways of down-regulated genes....
(a) Curve demonstrating expression pattern for early upregulated (red) and downregulated (blue) gene...
*<p>The number of differentially expressed genes (DEGs) that belong to a KEGG pathway.</p>**<p>The t...
*<p>: The gene number on the pathway, according to databases.</p>†<p>: The number of genes, which we...
<p>In the table, the gene count denotes the number of stage-dependent genes observed in each pathway...
<p>“P value” indicates the enrichment p-value of the Pathway ID determined by the Fisher's exact tes...
(A) GO terms of downregulated target genes. (B) GO terms of upregulated target genes. (C) Pathways o...
Pathway analysis of common down-regulated differentially expressed genes (DEGs) in GSE76092 and GSE4...
<p>(A) The significant GO category for up-regulated genes between the HP and HR groups. (B) The sign...
<p>(A) The top 20 pathways for the down-regulated genes. (B) The top 20 pathways for the up-regulate...
<p>Tables are organized in descending order of the number of matched genes and likelihood to affect ...
(A) The most 10 significant pathways and the DEGs count involved in these pathways of down-regulated...
<p>Red bars represent the persistently upregulated KEGG pathway enrichment significance levels, and ...
<p>(A) Graphs represent the number of genes differentially up- or down- regulated for each isolate c...
*<p>The number of differentially expressed genes (DEGs) that belong to a KEGG pathway.</p>**<p>The t...
<p>(A) Significant pathways of up-regulated genes. (B) Significant pathways of down-regulated genes....
(a) Curve demonstrating expression pattern for early upregulated (red) and downregulated (blue) gene...
*<p>The number of differentially expressed genes (DEGs) that belong to a KEGG pathway.</p>**<p>The t...