Additional file 1: of MicroRNA 157-targeted SPL genes regulate floral organ size and ovule production in cotton

Additional file 8: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S8. Primers for quantitative RT-PCR and RLM-5â RACE and sequence variation analysis. (XLSX 9...

Additional file 1: of LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization

Ting Zhao (434093)
Xiaoyuan Tao (5957129)
Shouli Feng (752676)
Luyao Wang (3958562)
Hui Hong (256848)
Wei Ma (299083)
Guandong Shang (5957132)
Shisong Guo (5957135)
Yuxin He (714049)
Baoliang Zhou (461210)
Xueying Guan (214478)

November 2018

Table S1. The strand-specific RNA sequencing (ssRNA-seq) library data summary. Table S2. The total l...

Additional file 1: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

Wenyan An (3480782)
Wenfang Gong (193513)
Shoupu He (561548)
Zhaoe Pan (561546)
Junling Sun (561545)
Xiongming Du (561554)

October 2015

The classification of the large-scale short reads into known categories. (TIFF 83 kb

Additional file 9: of MicroRNA 157-targeted SPL genes regulate floral organ size and ovule production in cotton

Nian Liu (29935)
Lili Tu (83770)
Lichen Wang (1617874)
Haiyan Hu (181662)
Jiao Xu (420070)
Xianlong Zhang (211930)

January 2017

Quantification analysis of MADS-box genes in ectopic-expressing GhmiR157 precursor lines and wild ty...

Additional file 5: of miRNAs involved in the development and differentiation of fertile and sterile flowers in Viburnum macrocephalum f. keteleeri

Weixing Li (1439725)
Zhichong He (4513138)
Li Zhang (8200)
Zhaogeng Lu (4513141)
Jing Xu (1234089)
Jiawen Cui (4513135)
Li Wang (15202)
Biao Jin (279879)

October 2017

Fold-back structures for known miRNA from Viburnum macrocephalum f. keteleeri. Precursor sequences f...

Additional file 2: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S2. Information of conserved and non-conserved miRNA family in A, B, and R lines. (XLSX 24Â kb

Additional file 1: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S1. Information of differentially expressed genes in A, B, and R lines. (XLSX 488Â kb

Additional file 5: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S5. Annotation of predicted target genes for known and novel miRNAs. (XLSX 661Â kb

Additional file 12: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

Jin Chen (130241)
Pin Su (812746)
Pengyun Chen (5594879)
Qiong Li (346270)
Xiaoling Yuan (139576)
Zhi Liu (165121)

August 2018

Figure S5. Three miRNAs were used for the judgment of anther development stage according to the expr...

Additional file 10: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

Wenyan An (3480782)
Wenfang Gong (193513)
Shoupu He (561548)
Zhaoe Pan (561546)
Junling Sun (561545)
Xiongming Du (561554)

October 2015

The location of miRNA target genes related to dwarf mutant and tall-culm mutant in cotton AD genome....

Additional file 7: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S7. Information of differentially expressed miRNA-target pairs in A-B and A-R compare group. (...

Additional file 2: of LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization

Ting Zhao (434093)
Xiaoyuan Tao (5957129)
Shouli Feng (752676)
Luyao Wang (3958562)
Hui Hong (256848)
Wei Ma (299083)
Guandong Shang (5957132)
Shisong Guo (5957135)
Yuxin He (714049)
Baoliang Zhou (461210)
Xueying Guan (214478)

November 2018

Figure S1. LncRNA landscape in Gossypium spp., G. arboreum, G. raimondii, (G. arboreum Ă G. raimond...

Additional file 4: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S4. Information of differentially expressed miRNAs in A-B and A-R compare group. (XLSX 19Â kb

Additional file 12: of miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species

K. Ta (3467165)
F. Sabot (3249348)
H. Adam (3467162)
Y. Vigouroux (3249342)
S. De Mita (3467153)
A. GhesquiĂ¨re (3467147)
N. Do (3467150)
P. Gantet (3467159)
S. Jouannic (3467156)

March 2016

Expression patterns of phasiRNAs and lncRNA precursors associated with 21-nucleotide phased loci in ...

Additional file 9: of miRNAs involved in the development and differentiation of fertile and sterile flowers in Viburnum macrocephalum f. keteleeri

Weixing Li (1439725)
Zhichong He (4513138)
Li Zhang (8200)
Zhaogeng Lu (4513141)
Jing Xu (1234089)
Jiawen Cui (4513135)
Li Wang (15202)
Biao Jin (279879)

October 2017

Novel miRNA*s in Viburnum macrocephalum f. keteleeri flowers, including expression levels in VMF and...

Additional file 8: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S8. Primers for quantitative RT-PCR and RLM-5â RACE and sequence variation analysis. (XLSX 9...

Additional file 1: of LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization

Ting Zhao (434093)
Xiaoyuan Tao (5957129)
Shouli Feng (752676)
Luyao Wang (3958562)
Hui Hong (256848)
Wei Ma (299083)
Guandong Shang (5957132)
Shisong Guo (5957135)
Yuxin He (714049)
Baoliang Zhou (461210)
Xueying Guan (214478)

November 2018

Table S1. The strand-specific RNA sequencing (ssRNA-seq) library data summary. Table S2. The total l...

Additional file 1: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

Wenyan An (3480782)
Wenfang Gong (193513)
Shoupu He (561548)
Zhaoe Pan (561546)
Junling Sun (561545)
Xiongming Du (561554)

October 2015

The classification of the large-scale short reads into known categories. (TIFF 83 kb

Additional file 9: of MicroRNA 157-targeted SPL genes regulate floral organ size and ovule production in cotton

Nian Liu (29935)
Lili Tu (83770)
Lichen Wang (1617874)
Haiyan Hu (181662)
Jiao Xu (420070)
Xianlong Zhang (211930)

January 2017

Quantification analysis of MADS-box genes in ectopic-expressing GhmiR157 precursor lines and wild ty...

Additional file 5: of miRNAs involved in the development and differentiation of fertile and sterile flowers in Viburnum macrocephalum f. keteleeri

Weixing Li (1439725)
Zhichong He (4513138)
Li Zhang (8200)
Zhaogeng Lu (4513141)
Jing Xu (1234089)
Jiawen Cui (4513135)
Li Wang (15202)
Biao Jin (279879)

October 2017

Fold-back structures for known miRNA from Viburnum macrocephalum f. keteleeri. Precursor sequences f...

Additional file 2: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S2. Information of conserved and non-conserved miRNA family in A, B, and R lines. (XLSX 24Â kb

Additional file 1: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S1. Information of differentially expressed genes in A, B, and R lines. (XLSX 488Â kb

Additional file 5: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S5. Annotation of predicted target genes for known and novel miRNAs. (XLSX 661Â kb

Additional file 12: of Insights into the cotton anther development through association analysis of transcriptomic and small RNA sequencing

Jin Chen (130241)
Pin Su (812746)
Pengyun Chen (5594879)
Qiong Li (346270)
Xiaoling Yuan (139576)
Zhi Liu (165121)

August 2018

Figure S5. Three miRNAs were used for the judgment of anther development stage according to the expr...

Additional file 10: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

Wenyan An (3480782)
Wenfang Gong (193513)
Shoupu He (561548)
Zhaoe Pan (561546)
Junling Sun (561545)
Xiongming Du (561554)

October 2015

The location of miRNA target genes related to dwarf mutant and tall-culm mutant in cotton AD genome....

Additional file 7: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S7. Information of differentially expressed miRNA-target pairs in A-B and A-R compare group. (...

Additional file 2: of LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization

Ting Zhao (434093)
Xiaoyuan Tao (5957129)
Shouli Feng (752676)
Luyao Wang (3958562)
Hui Hong (256848)
Wei Ma (299083)
Guandong Shang (5957132)
Shisong Guo (5957135)
Yuxin He (714049)
Baoliang Zhou (461210)
Xueying Guan (214478)

November 2018

Figure S1. LncRNA landscape in Gossypium spp., G. arboreum, G. raimondii, (G. arboreum Ă G. raimond...

Additional file 4: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S4. Information of differentially expressed miRNAs in A-B and A-R compare group. (XLSX 19Â kb

Additional file 12: of miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species

K. Ta (3467165)
F. Sabot (3249348)
H. Adam (3467162)
Y. Vigouroux (3249342)
S. De Mita (3467153)
A. GhesquiĂ¨re (3467147)
N. Do (3467150)
P. Gantet (3467159)
S. Jouannic (3467156)

March 2016

Expression patterns of phasiRNAs and lncRNA precursors associated with 21-nucleotide phased loci in ...

Additional file 9: of miRNAs involved in the development and differentiation of fertile and sterile flowers in Viburnum macrocephalum f. keteleeri

Weixing Li (1439725)
Zhichong He (4513138)
Li Zhang (8200)
Zhaogeng Lu (4513141)
Jing Xu (1234089)
Jiawen Cui (4513135)
Li Wang (15202)
Biao Jin (279879)

October 2017

Novel miRNA*s in Viburnum macrocephalum f. keteleeri flowers, including expression levels in VMF and...

Additional file 8: of A combined small RNA and transcriptome sequencing analysis reveal regulatory roles of miRNAs during anther development of Upland cotton carrying cytoplasmic male sterile Gossypium harknessii (D2) cytoplasm

Bingbing Zhang (414104)
Xuexian Zhang (3860368)
Guoyuan Liu (3860371)
Liping Guo (596697)
Tingxiang Qi (3860374)
Meng Zhang (154027)
Xue Li (285380)
Hailin Wang (67695)
Huini Tang (3860359)
Xiuqin Qiao (3860365)
Wenfeng Pei (843644)
Kashif Shahzad (5868347)
Chaozhu Xing (3860362)
Jinfa Zhang (121196)
Jianyong Wu (190201)

October 2018

Table S8. Primers for quantitative RT-PCR and RLM-5â RACE and sequence variation analysis. (XLSX 9...

Additional file 1: of LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization

Ting Zhao (434093)
Xiaoyuan Tao (5957129)
Shouli Feng (752676)
Luyao Wang (3958562)
Hui Hong (256848)
Wei Ma (299083)
Guandong Shang (5957132)
Shisong Guo (5957135)
Yuxin He (714049)
Baoliang Zhou (461210)
Xueying Guan (214478)

November 2018

Table S1. The strand-specific RNA sequencing (ssRNA-seq) library data summary. Table S2. The total l...

Additional file 1: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

Wenyan An (3480782)
Wenfang Gong (193513)
Shoupu He (561548)
Zhaoe Pan (561546)
Junling Sun (561545)
Xiongming Du (561554)

October 2015

The classification of the large-scale short reads into known categories. (TIFF 83 kb

Additional file 1: of MicroRNA 157-targeted SPL genes regulate floral organ size and ovule production in cotton

Abstract

Extracted data

Additional file 1: of MicroRNA 157-targeted SPL genes regulate floral organ size and ovule production in cotton

Abstract

Extracted data

Related items

Related items