Additional file 9: Figure S5. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Additional file 2: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

Peter Civáň (491043)
Terence Brown (5132765)

April 2018

Supporting figures. Figure S1. Schematic summary of the data processing and analysis pipeline. Figur...

Additional file 1: of Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location

Agnieszka Zmienko (696705)
Anna Samelak-Czajka (696706)
Piotr Kozlowski (300269)
Maja Szymanska (3426998)
Marek Figlerowicz (473874)

November 2016

Figure S1. Distribution of DNA copy number in regions covered by CNV_610 and CNV_611 in 80 natural a...

Additional file 1: Table S1. of Adaptation of Arabidopsis thaliana to the Yangtze River basin

Yu-Pan Zou (4595896)
Xing-Hui Hou (4724760)
Qiong Wu (84327)
Jia-Fu Chen (619908)
Zi-Wen Li (4595905)
Ting-Shen Han (4595902)
Xiao-Min Niu (4724763)
Li Yang (6520)
Yong-Chao Xu (4595899)
Jie Zhang (64655)
Fu-Min Zhang (48580)
Dunyan Tan (4724757)
Zhixi Tian (4017083)
Hongya Gu (395352)
Ya-Long Guo (3266772)

December 2017

Environmental variables used in the ecological analysis. Table S4. Demographic parameters results fr...

Additional file 7: Figure S3. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Observed (solid red lines) versus expected (dotted black lines) distributions of Tajima’s D for nine...

Additional file 2: Table S2. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Characteristics of 20 microsatellite markers used for Arabidopsis halleri. Source refers to the spec...

Additional file 1: Figure S1. of Genomic variations and distinct evolutionary rate of rare alleles in Arabidopsis thaliana

Shabana Memon (3445430)
Xianqing Jia (3445436)
Longjiang Gu (3445433)
Xiaohui Zhang (81778)

January 2016

Results of coalescent simulations. Figure S2. The distribution of Tajimaâs D statistic. Figure S3....

Additional file 3: Figure S1. of Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives

Qiong Wu (84327)
Ting-Shen Han (4595902)
Xi Chen (35903)
Jia-Fu Chen (619908)
Yu-Pan Zou (4595896)
Zi-Wen Li (4595905)
Yong-Chao Xu (4595899)
Ya-Long Guo (3266772)

November 2017

Allelic trees across the two species based on the 100-bp window around the TSP sites for each of the...

Additional file 5: Table S8. of Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives

Qiong Wu (84327)
Ting-Shen Han (4595902)
Xi Chen (35903)
Jia-Fu Chen (619908)
Yu-Pan Zou (4595896)
Zi-Wen Li (4595905)
Yong-Chao Xu (4595899)
Ya-Long Guo (3266772)

November 2017

Ecological analysis: source data and results. A. The 48 ecological factors used in the analysis and ...

Additional file 1: of The importance of genotype identity, genetic heterogeneity, and bioinformatic handling for properly assessing genomic variation in transgenic plants

Jean-Michel Michno (3398657)
Robert Stupar (3398648)

June 2018

Figure S1. Pipeline to identify the background genotype of 764. Figure S2. Quality scores for all po...

Additional file 1: of Analysis of genetic differentiation and genomic variation to reveal potential regions of importance during maize improvement

Xun Wu (382798)
Yongxiang Li (116212)
Xin Li (51274)
Chunhui Li (501186)
Yunsu Shi (711297)
Yanchun Song (711298)
Zuping Zheng (3528419)
Yu Li (183836)
Tianyu Wang (397547)

October 2015

Figure S1. Correlation analysis of the first five principal components (PCs) between specific subset...

Data from: Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Fischer, Martin C.
Rellstab, Christian
Leuzinger, Marianne
Roumet, Marie
Gugerli, Felix
Shimizu, Kentaro K.
Holderegger, Rolf
Widmer, Alex

December 2017

Background: Microsatellite markers are widely used for estimating genetic diversity within and diffe...

Additional file 2: of Large scale patterns of genetic variation and differentiation in sugar maple from tropical Central America to temperate North America

Yalma Vargas-Rodriguez (3402995)
William Platt (3402998)
Lowell Urbatsch (3402992)
David Foltz (3402989)

November 2015

Below diagonal, FST: the proportion of genetic diversity due to allele frequency differences among p...

Additional file 9: of Intrachromosomal colocalization strengthens co-expression, co-modification and evolutionary conservation of neighboring genes

Shuaibin Lian (5393588)
Tianliang Liu (5393585)
Shengli Jing (574997)
Hongyu Yuan (713804)
Zaibao Zhang (3295551)
Lin Cheng (107461)

June 2018

Table S8. The fitted phylogenetic coefficient of Arabidopsis thaliana with other 22 species by using...

Additional file 1: of R-gene variation across Arabidopsis lyrata subspecies: effects of population structure, selection and mating system

James Buckley (3245625)
Elizabeth Kilbride (3200937)
Volkan Cevik (3435617)
Joana Vicente (3405776)
Eric Holub (215175)
Barbara Mable (302267)

May 2016

Methods: Heterozygote resolution for R-genes (WRR4 and RPM1). Table S1. Details of the geographic lo...

Additional file 1: Figure S1. of Long-term persisting hybrid swarm and geographic difference in hybridization pattern: genetic consequences of secondary contact between two Vincetoxicum species (Apocynaceae–Asclepiadoideae)

Yue Li (102191)
Fumito Tada (3250521)
Tadashi Yamashiro (3250518)
Masayuki Maki (9148)

January 2016

Map showing presence data for V. atratum (filled purple circles) and V. japonicum (filled yellow cir...

Additional file 2: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

Peter Civáň (491043)
Terence Brown (5132765)

April 2018

Supporting figures. Figure S1. Schematic summary of the data processing and analysis pipeline. Figur...

Additional file 1: of Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location

Agnieszka Zmienko (696705)
Anna Samelak-Czajka (696706)
Piotr Kozlowski (300269)
Maja Szymanska (3426998)
Marek Figlerowicz (473874)

November 2016

Figure S1. Distribution of DNA copy number in regions covered by CNV_610 and CNV_611 in 80 natural a...

Additional file 1: Table S1. of Adaptation of Arabidopsis thaliana to the Yangtze River basin

Yu-Pan Zou (4595896)
Xing-Hui Hou (4724760)
Qiong Wu (84327)
Jia-Fu Chen (619908)
Zi-Wen Li (4595905)
Ting-Shen Han (4595902)
Xiao-Min Niu (4724763)
Li Yang (6520)
Yong-Chao Xu (4595899)
Jie Zhang (64655)
Fu-Min Zhang (48580)
Dunyan Tan (4724757)
Zhixi Tian (4017083)
Hongya Gu (395352)
Ya-Long Guo (3266772)

December 2017

Environmental variables used in the ecological analysis. Table S4. Demographic parameters results fr...

Additional file 7: Figure S3. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Observed (solid red lines) versus expected (dotted black lines) distributions of Tajima’s D for nine...

Additional file 2: Table S2. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Martin Fischer (409025)
Christian Rellstab (475040)
Marianne Leuzinger (3631432)
Marie Roumet (3251367)
Felix Gugerli (151270)
Kentaro Shimizu (837225)
Rolf Holderegger (288756)
Alex Widmer (90923)

January 2017

Characteristics of 20 microsatellite markers used for Arabidopsis halleri. Source refers to the spec...

Additional file 1: Figure S1. of Genomic variations and distinct evolutionary rate of rare alleles in Arabidopsis thaliana

Shabana Memon (3445430)
Xianqing Jia (3445436)
Longjiang Gu (3445433)
Xiaohui Zhang (81778)

January 2016

Results of coalescent simulations. Figure S2. The distribution of Tajimaâs D statistic. Figure S3....

Additional file 3: Figure S1. of Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives

Qiong Wu (84327)
Ting-Shen Han (4595902)
Xi Chen (35903)
Jia-Fu Chen (619908)
Yu-Pan Zou (4595896)
Zi-Wen Li (4595905)
Yong-Chao Xu (4595899)
Ya-Long Guo (3266772)

November 2017

Allelic trees across the two species based on the 100-bp window around the TSP sites for each of the...

Additional file 5: Table S8. of Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives

Qiong Wu (84327)
Ting-Shen Han (4595902)
Xi Chen (35903)
Jia-Fu Chen (619908)
Yu-Pan Zou (4595896)
Zi-Wen Li (4595905)
Yong-Chao Xu (4595899)
Ya-Long Guo (3266772)

November 2017

Ecological analysis: source data and results. A. The 48 ecological factors used in the analysis and ...

Additional file 1: of The importance of genotype identity, genetic heterogeneity, and bioinformatic handling for properly assessing genomic variation in transgenic plants

Jean-Michel Michno (3398657)
Robert Stupar (3398648)

June 2018

Figure S1. Pipeline to identify the background genotype of 764. Figure S2. Quality scores for all po...

Additional file 1: of Analysis of genetic differentiation and genomic variation to reveal potential regions of importance during maize improvement

Xun Wu (382798)
Yongxiang Li (116212)
Xin Li (51274)
Chunhui Li (501186)
Yunsu Shi (711297)
Yanchun Song (711298)
Zuping Zheng (3528419)
Yu Li (183836)
Tianyu Wang (397547)

October 2015

Figure S1. Correlation analysis of the first five principal components (PCs) between specific subset...

Data from: Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Fischer, Martin C.
Rellstab, Christian
Leuzinger, Marianne
Roumet, Marie
Gugerli, Felix
Shimizu, Kentaro K.
Holderegger, Rolf
Widmer, Alex

December 2017

Background: Microsatellite markers are widely used for estimating genetic diversity within and diffe...

Additional file 2: of Large scale patterns of genetic variation and differentiation in sugar maple from tropical Central America to temperate North America

Yalma Vargas-Rodriguez (3402995)
William Platt (3402998)
Lowell Urbatsch (3402992)
David Foltz (3402989)

November 2015

Below diagonal, FST: the proportion of genetic diversity due to allele frequency differences among p...

Additional file 9: of Intrachromosomal colocalization strengthens co-expression, co-modification and evolutionary conservation of neighboring genes

Shuaibin Lian (5393588)
Tianliang Liu (5393585)
Shengli Jing (574997)
Hongyu Yuan (713804)
Zaibao Zhang (3295551)
Lin Cheng (107461)

June 2018

Table S8. The fitted phylogenetic coefficient of Arabidopsis thaliana with other 22 species by using...

Additional file 1: of R-gene variation across Arabidopsis lyrata subspecies: effects of population structure, selection and mating system

James Buckley (3245625)
Elizabeth Kilbride (3200937)
Volkan Cevik (3435617)
Joana Vicente (3405776)
Eric Holub (215175)
Barbara Mable (302267)

May 2016

Methods: Heterozygote resolution for R-genes (WRR4 and RPM1). Table S1. Details of the geographic lo...

Additional file 1: Figure S1. of Long-term persisting hybrid swarm and geographic difference in hybridization pattern: genetic consequences of secondary contact between two Vincetoxicum species (Apocynaceae–Asclepiadoideae)

Yue Li (102191)
Fumito Tada (3250521)
Tadashi Yamashiro (3250518)
Masayuki Maki (9148)

January 2016

Map showing presence data for V. atratum (filled purple circles) and V. japonicum (filled yellow cir...

Additional file 2: of Role of genetic introgression during the evolution of cultivated rice (Oryza sativa L.)

Peter Civáň (491043)
Terence Brown (5132765)

April 2018

Supporting figures. Figure S1. Schematic summary of the data processing and analysis pipeline. Figur...

Additional file 1: of Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location

Agnieszka Zmienko (696705)
Anna Samelak-Czajka (696706)
Piotr Kozlowski (300269)
Maja Szymanska (3426998)
Marek Figlerowicz (473874)

November 2016

Figure S1. Distribution of DNA copy number in regions covered by CNV_610 and CNV_611 in 80 natural a...

Additional file 1: Table S1. of Adaptation of Arabidopsis thaliana to the Yangtze River basin

Yu-Pan Zou (4595896)
Xing-Hui Hou (4724760)
Qiong Wu (84327)
Jia-Fu Chen (619908)
Zi-Wen Li (4595905)
Ting-Shen Han (4595902)
Xiao-Min Niu (4724763)
Li Yang (6520)
Yong-Chao Xu (4595899)
Jie Zhang (64655)
Fu-Min Zhang (48580)
Dunyan Tan (4724757)
Zhixi Tian (4017083)
Hongya Gu (395352)
Ya-Long Guo (3266772)

December 2017

Environmental variables used in the ecological analysis. Table S4. Demographic parameters results fr...

Additional file 9: Figure S5. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Abstract

Extracted data

Additional file 9: Figure S5. of Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri

Abstract

Extracted data

Related items

Related items