Ranked list of significant probe sets up and down-regulated in MCF-7/Twist cells, primary tumors, and metastases. Probe sets are ranked by average fold change across all 3 groups. (XLSX 148Â kb
Table S5. List of genes with subtype specific active enhancer states. (XLS 212Â kb
Table S2. A. Number of CDGs mutated in at least 5 samples with methylation data in one tumor type; B...
Supplementary methods. Detailed description of tissue preparation including microtomy, de-waxing and...
Ranked list of significant probe sets up and down-regulated in both MCF-7/Twist cells and MCF-7/Twis...
Ranked list of significant probe sets most differentially expressed in MCF-7/Twist cells. Probe sets...
qRT-PCR validation results of genes up-regulated (SETD5 and TFAP2A) and down-regulated (SLC6A14 and ...
Figure S1. Enrichment of histone modification ChIP-seq signals pooled from all sampled in (A) transc...
Table S6. Number of tumor samples with mutations in each of the 21 chromatin regulator genes in list...
Figure S1. Mutation patterns of the identified 32 MDGs across 20 TCGA tumor types. Each row represen...
A table listing the gene ontology terms of differentially expressed genes between MCF-10A and MCF-7 ...
Table S7. Chromatin regulators dysregulated by IDH1 and CIC in LGG. |Ti| is number of tumor types wh...
Figure S4. Unsupervised clustering of histone modification occupancy in highly variable regions (A, ...
Tumor vs Normal 5 sub-gene signatures. The 5 non-joint 83-gene signatures are included, each consist...
Comparison of the frequency of select mutational events in breast cancer tumours versus cell lines. ...
Table S1. List of significant genes illustrating enrichment and depletion of genes across 3 ovarian ...
Table S5. List of genes with subtype specific active enhancer states. (XLS 212Â kb
Table S2. A. Number of CDGs mutated in at least 5 samples with methylation data in one tumor type; B...
Supplementary methods. Detailed description of tissue preparation including microtomy, de-waxing and...
Ranked list of significant probe sets up and down-regulated in both MCF-7/Twist cells and MCF-7/Twis...
Ranked list of significant probe sets most differentially expressed in MCF-7/Twist cells. Probe sets...
qRT-PCR validation results of genes up-regulated (SETD5 and TFAP2A) and down-regulated (SLC6A14 and ...
Figure S1. Enrichment of histone modification ChIP-seq signals pooled from all sampled in (A) transc...
Table S6. Number of tumor samples with mutations in each of the 21 chromatin regulator genes in list...
Figure S1. Mutation patterns of the identified 32 MDGs across 20 TCGA tumor types. Each row represen...
A table listing the gene ontology terms of differentially expressed genes between MCF-10A and MCF-7 ...
Table S7. Chromatin regulators dysregulated by IDH1 and CIC in LGG. |Ti| is number of tumor types wh...
Figure S4. Unsupervised clustering of histone modification occupancy in highly variable regions (A, ...
Tumor vs Normal 5 sub-gene signatures. The 5 non-joint 83-gene signatures are included, each consist...
Comparison of the frequency of select mutational events in breast cancer tumours versus cell lines. ...
Table S1. List of significant genes illustrating enrichment and depletion of genes across 3 ovarian ...
Table S5. List of genes with subtype specific active enhancer states. (XLS 212Â kb
Table S2. A. Number of CDGs mutated in at least 5 samples with methylation data in one tumor type; B...
Supplementary methods. Detailed description of tissue preparation including microtomy, de-waxing and...
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