Additional file 2: of Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data

This file is a tab-delimited text file of all TCGA read pairs and their corresponding metadata and bacterial taxonomic assignments. Comments are denoted by a #. Abbreviations for sequencing center and tissue source site are as follows: BCGSC—British Columbia Genome Sequencing Center; Broad—The Broad Institute of MIT and Harvard; Fox Chase—Fox Chase Cancer Center; MSKCC—Memorial Sloan Kettering Cancer Center; UCSF—University of California San Francisco; UNC—University of North Carolina; Wash Univ St. Louis—Washington University in St. Louis. Additional File 2 unfortunately cannot be accessed from this article. However, it can be accessed via a Dryad file available from the following link: http://dx.doi.org/10.5061/dryad.96584 if downloaded as a gzip archive and opened with WinRAR. (GZ 259 kb