Additional file 4: Figure S2. of Comparative analysis of Corynebacterium glutamicum genomes: a new perspective for the industrial production of amino acids

Additional file 4: of Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa

Cormac Fitzgerald (6088049)
Andrey Shkoporov (6088052)
Thomas Sutton (3860260)
Andrei Chaplin (6088055)
Vimalkumar Velayudhan (126780)
R. Ross (3461291)
Colin Hill (73239)

December 2018

Table S2. List of 245 orthologous genes in the family Ruminococcaceae used for phylogeny inference. ...

Additional file 24: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan- and core-genome evolution of L. plantarum. A Evolution of the pan-genome for L. plantarum. The ...

Additional file 2: Figure S1. of Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family

Gabriele Lugli (3522308)
Christian Milani (133915)
Francesca Turroni (133919)
Sabrina Duranti (133929)
Leonardo Mancabelli (3661636)
Marta Mangifesta (4176520)
Chiara Ferrario (504451)
Monica Modesto (4321054)
Paola Mattarelli (4321057)
Killer JiĹĂ (4321048)
Douwe Sinderen (4321051)
Marco Ventura (133957)

August 2017

Phylogenetic trees of the Bifidobacteriaceae family. Panel a display the 16S rRNA gene-based tree of...

Additional file 3: Figure S1. of Comparative analysis of Corynebacterium glutamicum genomes: a new perspective for the industrial production of amino acids

Junjie Yang (219166)
Sheng Yang (592249)

January 2017

Genome-wide alignment of selected C. glutamicum strains in an all-versus-all manner to ATCC 13032: M...

Additional file 1: of Corynebacterium glutamicum possesses Î˛-N-acetylglucosaminidase

Christian Matano (3421781)
Stephan Kolkenbrock (474949)
Stefanie Hamer (3421787)
Elvira Sgobba (3421784)
Bruno Moerschbacher (3399581)
Volker Wendisch (3421790)

August 2016

Table S1. Oligonucleotides used in this study. Figure S1 Plasmid maps of pVWEx1-nagE [A] and pEKEx3-...

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins

Kalinowski, Jörn
Bathe, B.
Bartels, D.
Bischoff, N.
Bott, M.
Burkovski, A.
Dusch, N.
Eggeling, L.
Eikmanns, B. J.
Gaigalat, L.
Goesmann, Alexander
Hartmann, M.
Huthmacher, K.
Kramer, R.
Linke, Burkhard
McHardy, A. C.
Meyer, F.
Mockel, B.
Pfefferle, W.
Pühler, Alfred
Rey, D. A.
Rückert, Christian
Rupp, O.
Sahm, H.
Wendisch, Volker F.
Wiegrabe, I.
Tauch, Andreas

January 2003

Kalinowski J, Bathe B, Bartels D, et al. The complete Corynebacterium glutamicum ATCC 13032 genome s...

Additional file 1: Table S1. of Identification of two mutations increasing the methanol tolerance of Corynebacterium glutamicum

Lennart Leßmeier (3535952)
Volker Wendisch (3421790)

October 2015

Genome-wide comparison of mRNA levels between the strains Tol1 and C. glutamicum WT(pVWEx1) during g...

Design and Development of a Database for the Classification of Corynebacterium glutamicum Genes, Proteins, Mutants and Experimental Protocols

Muhammad, Ashfaq

January 2006

Coryneform bacteria are largely distributed in nature and are rod like, aerobic soil bacteria capabl...

Design and Development of a Database for the Classification of Corynebacterium glutamicum Genes, Proteins, Mutants and Experimental Protocols

Muhammad, Ashfaq

January 2006

Coryneform bacteria are largely distributed in nature and are rod like, aerobic soil bacteria capabl...

MOESM1 of Engineering Corynebacterium glutamicum to produce 5-aminolevulinic acid from glucose

Xiaoli Yu (155682)
Haiying Jin (2653936)
Wenjing Liu (552606)
Qian Wang (32718)
Qingsheng Qi (256048)

November 2015

Additional file 1. Figure S1. Multiple-sequence alignment of GluRS (A), HemA (B), and HemL (C) from ...

MOESM1 of A new genome-scale metabolic model of Corynebacterium glutamicum and its application

Yu Zhang (12946)
Jingyi Cai (4218817)
Xiuling Shang (452946)
Bo Wang (86769)
Shuwen Liu (146709)
Xin Chai (2823662)
Tianwei Tan (457804)
Yun Zhang (131894)
Tingyi Wen (10249)

June 2017

Additional file 1: Table S1. Comparison of GEM attributes among various C. glutamicum models. Table ...

Additional file 11: Figure S2. of Comparison of Xenorhabdus bovienii bacterial strain genomes reveals diversity in symbiotic functions

Kristen Murfin (3533495)
Amy Whooley (3533498)
Jonathan Klassen (1300188)
Heidi Goodrich-Blair (81292)

November 2015

Phylogenies of TC toxin amino acid sequences. Description: Image of the phylogenies built from amino...

Additional file 1: of Genomic insights into the evolution of hybrid isoprenoid biosynthetic gene clusters in the MAR4 marine streptomycete clade

Kelley Gallagher (3466736)
Paul Jensen (48036)

November 2015

Table S1. Genome sequences used in this study. Table S2. ABBA PTases used as query sequences. Table ...

Additional file 2: Table S2. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Ram Singh (594217)
Sonam Gaba (3431615)
Ajar Yadav (3431618)
Prakhar Gaur (125760)
Sneha Gulati (3431612)
Rajeev Kaushik (3431609)
Anil Saxena (3431621)

August 2016

Quantitative analysis of amino acids content of Arthrobacter agilis strain L77 by HPLC. (DOCX 15Â kb

Additional file 2 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

Svetlana Karamycheva (1208)
Yuri I. Wolf (8747550)
Erez Persi (229020)
Eugene V. Koonin (6629249)
Kira S. Makarova (8747547)

August 2022

Additional file 2: Fig. S1. The scheme of phylogenetic tree for WcaE-like glycosyltransferases of CO...

Additional file 4: of Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa

Cormac Fitzgerald (6088049)
Andrey Shkoporov (6088052)
Thomas Sutton (3860260)
Andrei Chaplin (6088055)
Vimalkumar Velayudhan (126780)
R. Ross (3461291)
Colin Hill (73239)

December 2018

Table S2. List of 245 orthologous genes in the family Ruminococcaceae used for phylogeny inference. ...

Additional file 24: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan- and core-genome evolution of L. plantarum. A Evolution of the pan-genome for L. plantarum. The ...

Additional file 2: Figure S1. of Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family

Gabriele Lugli (3522308)
Christian Milani (133915)
Francesca Turroni (133919)
Sabrina Duranti (133929)
Leonardo Mancabelli (3661636)
Marta Mangifesta (4176520)
Chiara Ferrario (504451)
Monica Modesto (4321054)
Paola Mattarelli (4321057)
Killer JiĹĂ (4321048)
Douwe Sinderen (4321051)
Marco Ventura (133957)

August 2017

Phylogenetic trees of the Bifidobacteriaceae family. Panel a display the 16S rRNA gene-based tree of...

Additional file 3: Figure S1. of Comparative analysis of Corynebacterium glutamicum genomes: a new perspective for the industrial production of amino acids

Junjie Yang (219166)
Sheng Yang (592249)

January 2017

Genome-wide alignment of selected C. glutamicum strains in an all-versus-all manner to ATCC 13032: M...

Additional file 1: of Corynebacterium glutamicum possesses Î˛-N-acetylglucosaminidase

Christian Matano (3421781)
Stephan Kolkenbrock (474949)
Stefanie Hamer (3421787)
Elvira Sgobba (3421784)
Bruno Moerschbacher (3399581)
Volker Wendisch (3421790)

August 2016

Table S1. Oligonucleotides used in this study. Figure S1 Plasmid maps of pVWEx1-nagE [A] and pEKEx3-...

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins

Kalinowski, Jörn
Bathe, B.
Bartels, D.
Bischoff, N.
Bott, M.
Burkovski, A.
Dusch, N.
Eggeling, L.
Eikmanns, B. J.
Gaigalat, L.
Goesmann, Alexander
Hartmann, M.
Huthmacher, K.
Kramer, R.
Linke, Burkhard
McHardy, A. C.
Meyer, F.
Mockel, B.
Pfefferle, W.
Pühler, Alfred
Rey, D. A.
Rückert, Christian
Rupp, O.
Sahm, H.
Wendisch, Volker F.
Wiegrabe, I.
Tauch, Andreas

January 2003

Kalinowski J, Bathe B, Bartels D, et al. The complete Corynebacterium glutamicum ATCC 13032 genome s...

Additional file 1: Table S1. of Identification of two mutations increasing the methanol tolerance of Corynebacterium glutamicum

Lennart Leßmeier (3535952)
Volker Wendisch (3421790)

October 2015

Genome-wide comparison of mRNA levels between the strains Tol1 and C. glutamicum WT(pVWEx1) during g...

Design and Development of a Database for the Classification of Corynebacterium glutamicum Genes, Proteins, Mutants and Experimental Protocols

Muhammad, Ashfaq

January 2006

Coryneform bacteria are largely distributed in nature and are rod like, aerobic soil bacteria capabl...

Design and Development of a Database for the Classification of Corynebacterium glutamicum Genes, Proteins, Mutants and Experimental Protocols

Muhammad, Ashfaq

January 2006

Coryneform bacteria are largely distributed in nature and are rod like, aerobic soil bacteria capabl...

MOESM1 of Engineering Corynebacterium glutamicum to produce 5-aminolevulinic acid from glucose

Xiaoli Yu (155682)
Haiying Jin (2653936)
Wenjing Liu (552606)
Qian Wang (32718)
Qingsheng Qi (256048)

November 2015

Additional file 1. Figure S1. Multiple-sequence alignment of GluRS (A), HemA (B), and HemL (C) from ...

MOESM1 of A new genome-scale metabolic model of Corynebacterium glutamicum and its application

Yu Zhang (12946)
Jingyi Cai (4218817)
Xiuling Shang (452946)
Bo Wang (86769)
Shuwen Liu (146709)
Xin Chai (2823662)
Tianwei Tan (457804)
Yun Zhang (131894)
Tingyi Wen (10249)

June 2017

Additional file 1: Table S1. Comparison of GEM attributes among various C. glutamicum models. Table ...

Additional file 11: Figure S2. of Comparison of Xenorhabdus bovienii bacterial strain genomes reveals diversity in symbiotic functions

Kristen Murfin (3533495)
Amy Whooley (3533498)
Jonathan Klassen (1300188)
Heidi Goodrich-Blair (81292)

November 2015

Phylogenies of TC toxin amino acid sequences. Description: Image of the phylogenies built from amino...

Additional file 1: of Genomic insights into the evolution of hybrid isoprenoid biosynthetic gene clusters in the MAR4 marine streptomycete clade

Kelley Gallagher (3466736)
Paul Jensen (48036)

November 2015

Table S1. Genome sequences used in this study. Table S2. ABBA PTases used as query sequences. Table ...

Additional file 2: Table S2. of First high quality draft genome sequence of a plant growth promoting and cold active enzyme producing psychrotrophic Arthrobacter agilis strain L77

Ram Singh (594217)
Sonam Gaba (3431615)
Ajar Yadav (3431618)
Prakhar Gaur (125760)
Sneha Gulati (3431612)
Rajeev Kaushik (3431609)
Anil Saxena (3431621)

August 2016

Quantitative analysis of amino acids content of Arthrobacter agilis strain L77 by HPLC. (DOCX 15Â kb

Additional file 2 of Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions

Svetlana Karamycheva (1208)
Yuri I. Wolf (8747550)
Erez Persi (229020)
Eugene V. Koonin (6629249)
Kira S. Makarova (8747547)

August 2022

Additional file 2: Fig. S1. The scheme of phylogenetic tree for WcaE-like glycosyltransferases of CO...

Additional file 4: of Comparative analysis of Faecalibacterium prausnitzii genomes shows a high level of genome plasticity and warrants separation into new species-level taxa

Cormac Fitzgerald (6088049)
Andrey Shkoporov (6088052)
Thomas Sutton (3860260)
Andrei Chaplin (6088055)
Vimalkumar Velayudhan (126780)
R. Ross (3461291)
Colin Hill (73239)

December 2018

Table S2. List of 245 orthologous genes in the family Ruminococcaceae used for phylogeny inference. ...

Additional file 24: of Clustering of Pan- and Core-genome of Lactobacillus provides Novel Evolutionary Insights for Differentiation

Raffael Inglin (5141051)
Leo Meile (35957)
Marc Stevens (3579653)

April 2018

Pan- and core-genome evolution of L. plantarum. A Evolution of the pan-genome for L. plantarum. The ...

Additional file 2: Figure S1. of Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family

Gabriele Lugli (3522308)
Christian Milani (133915)
Francesca Turroni (133919)
Sabrina Duranti (133929)
Leonardo Mancabelli (3661636)
Marta Mangifesta (4176520)
Chiara Ferrario (504451)
Monica Modesto (4321054)
Paola Mattarelli (4321057)
Killer JiĹĂ (4321048)
Douwe Sinderen (4321051)
Marco Ventura (133957)

August 2017

Phylogenetic trees of the Bifidobacteriaceae family. Panel a display the 16S rRNA gene-based tree of...

Additional file 4: Figure S2. of Comparative analysis of Corynebacterium glutamicum genomes: a new perspective for the industrial production of amino acids

Abstract

Extracted data

Additional file 4: Figure S2. of Comparative analysis of Corynebacterium glutamicum genomes: a new perspective for the industrial production of amino acids

Abstract

Extracted data

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