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Data Protection

Detection rate and false positive rate for microdeletion and microduplication of artificially affected samples.

Maria C. Neofytou (3716716)
Kyriakos Tsangaras (585075)
Elena Kypri (3716719)
Charalambos Loizides (3716707)
Marios Ioannides (780511)
Achilleas Achilleos (835724)
Petros Mina (780509)
Anna Keravnou (3716713)
Carolina Sismani (3601283)
George Koumbaris (3716710)
Philippos C. Patsalis (780512)

Publication date

February 2017

DOI

10.1371/journal.pone.0171319.t004

Abstract

<p>Detection rate and false positive rate for microdeletion and microduplication of artificially affected samples.</p

Extracted data

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Features of false positives events detected in calibration samples.

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Detection rates, false positive rates, optimal risk cutoffs, and NIPT failure rates.

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Number of extra false positives per true positive for varying levels of prevalence and prior detection rates.

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<p>The false positive rate for IISOM, traditional SOM and SOMSA with different iterations.</p

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<p>(A) 10% random corruption (B) 20% random corruption. (C) 30% random corruption (D) 40% random cor...

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Elisa Contini (753861)
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Buhm Han (180732)
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<p>The values in the parentheses are the ratio between the false positive rate and the threshold. Th...

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Elizabeth A. Hunsperger (646067)
Sutee Yoksan (186155)
Philippe Buchy (106901)
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Susana Vazquez (242779)
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Jose L. Pelegrino (646071)
Harvey Artsob (646072)
Maria G. Guzman (155599)
Piero Olliaro (35337)
Julien Zwang (261429)
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Susie Kliks (646073)
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Lower Limit of Detection dependence on False Positive Rate.

Nivedita Majumdar (711576)
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Elizabeth A. Hunsperger (646067)
Sutee Yoksan (186155)
Philippe Buchy (106901)
Vinh Chau Nguyen (646068)
Shamala Devi Sekaran (165904)
Delia A. Enria (646069)
Susana Vazquez (242779)
Elizabeth Cartozian (646070)
Jose L. Pelegrino (646071)
Harvey Artsob (646072)
Maria G. Guzman (155599)
Piero Olliaro (35337)
Julien Zwang (261429)
Martine Guillerm (127837)
Susie Kliks (646073)
Scott Halstead (216891)
Rosanna W. Peeling (146378)
Harold S. Margolis (147272)

October 2014

<p>False positive rate of anti-DENV IgM ELISA (Venture Technologies Sdn Bhd) in DENV negatives and c...

Estimated true positive rate (TPR) and average false positive rate (FPR) in percentages by pathogen and testing method.

Sithembiso C. Velaphi (6576737)
Matthew Westercamp (358741)
Malefu Moleleki (6576740)
Tracy Pondo (6576743)
Ziyaad Dangor (533500)
Nicole Wolter (631321)
Anne von Gottberg (194681)
Nong Shang (299860)
Alicia Demirjian (6576746)
Jonas M. Winchell (425093)
Maureen H. Diaz (425084)
Firdose Nakwa (718050)
Grace Okudo (6576749)
Jeannette Wadula (718053)
Clare Cutland (6508010)
Stephanie J. Schrag (354345)
Shabir A. Madhi (194703)

April 2019

Estimated true positive rate (TPR) and average false positive rate (FPR) in percentages by pathogen ...

False positive rate DENV NS1 rapid diagnostic tests in DENV negatives and challenge panel specimens.

Elizabeth A. Hunsperger (646067)
Sutee Yoksan (186155)
Philippe Buchy (106901)
Vinh Chau Nguyen (646068)
Shamala Devi Sekaran (165904)
Delia A. Enria (646069)
Susana Vazquez (242779)
Elizabeth Cartozian (646070)
Jose L. Pelegrino (646071)
Harvey Artsob (646072)
Maria G. Guzman (155599)
Piero Olliaro (35337)
Julien Zwang (261429)
Martine Guillerm (127837)
Susie Kliks (646073)
Scott Halstead (216891)
Rosanna W. Peeling (146378)
Harold S. Margolis (147272)

October 2014

<p>False positive rate DENV NS1 rapid diagnostic tests in DENV negatives and challenge panel specime...

Detection rates, false positive rates, optimal risk cutoffs, and NIPT failure rates.

Brandon S. Walker (764525)
Richard E. Nelson (764526)
Brian R. Jackson (233567)
David G. Grenache (764527)
Edward R. Ashwood (764528)
Robert L. Schmidt (764529)

July 2015

<p>Detection rates, false positive rates, optimal risk cutoffs, and NIPT failure rates.</p

Number of extra false positives per true positive for varying levels of prevalence and prior detection rates.

Michael S. Martin (2743063)
Beth K. Potter (192412)
Anne G. Crocker (2743066)
George A. Wells (559657)
Ian Colman (328496)

May 2016

<p>Number of extra false positives per true positive for varying levels of prevalence and prior dete...

The false positive rate for IISOM, traditional SOM and SOMSA with different iterations.

Hancui Zhang (4579210)
Shuyu Chen (4579207)
Jun Liu (42548)
Zhen Zhou (184390)
Tianshu Wu (4579204)

November 2017

<p>The false positive rate for IISOM, traditional SOM and SOMSA with different iterations.</p

False positive rate.

Kirsten E. Eilertson (295493)
James G. Booth (295496)
Carlos D. Bustamante (51881)

February 2013

<p>False positive rate in a data set of 1000 genes simulated using the coalescent method.</p

Percentage of disease variants with prediction scores at the 1% false positive rate threshold in putatively neutral variants.

Jose Lugo-Martinez (669589)
Vikas Pejaver (1478455)
Kymberleigh A. Pagel (3088803)
Shantanu Jain (3088800)
Matthew Mort (673246)
David N. Cooper (17051)
Sean D. Mooney (115684)
Predrag Radivojac (19890)

August 2016

<p>Percentage of disease variants with prediction scores at the 1% false positive rate threshold in ...

Recognition rates for test samples with different level of random corruption.

Jian-Xun Mi (312303)
Jin-Xing Liu (312304)

March 2013

<p>(A) 10% random corruption (B) 20% random corruption. (C) 30% random corruption (D) 40% random cor...

The results and positive detection rates of clinical samples by culture, species-specific PCR and multiplex real-time PCR.

Mingrui Zhang (6410942)
Fuqiu Li (6410945)
Ruoyu Li (74020)
Jie Gong (339362)
Fei Zhao (183673)

February 2019

The results and positive detection rates of clinical samples by culture, species-specific PCR and mu...

Features of false positives events detected in calibration samples.

Elisa Contini (753861)
Irene Paganini (753862)
Roberta Sestini (753863)
Luisa Candita (753864)
Gabriele Lorenzo Capone (753865)
Lorenzo Barbetti (753866)
Serena Falconi (753867)
Sabrina Frusconi (753868)
Irene Giotti (753869)
Costanza Giuliani (753870)
Francesca Torricelli (220055)
Matteo Benelli (155415)
Laura Papi (395245)

June 2015

<p>(a) Boxplot of VAFs of events detected by MuTect (SNVs) and IndelGenotyperV2 (InDels). n is the t...

Detection rate and false positive rate when the attack size is 5% and filler size varies in different datasets.

Wei Zhou (24328)
Junhao Wen (776881)
Yun Sing Koh (776882)
Qingyu Xiong (776883)
Min Gao (87060)
Gillian Dobbie (607909)
Shafiq Alam (776884)

July 2015

<p>Detection rate and false positive rate are detected when the attack size is 5% and filler size va...

False positive rate of FE, RE, and BE at increasing significance thresholds.

Buhm Han (180732)
Eleazar Eskin (108069)

March 2012

<p>The values in the parentheses are the ratio between the false positive rate and the threshold. Th...