Additional file 3: Figure S2. of Prophages and adaptation of Staphylococcus aureus ST398 to the human clinic

Comparative genomics for the identified prophages from three groups: φ3, MR11-like and others. The graph on the left illustrates the comparative genomics of the prophages. From outside to inside: ring 1, COG classification (see COG definitions in supplementary table S1) of ORFs in ring 2; rings 2 and 3, ORFs; ring 4, COG classification of ORFs in ring 3; rings 5 to 19 (in blue), the φ3 prophage genomes; rings 20 to 24 (in green), the genomes of prophages from “others” group; rings 25 to 30 (in red), the MR11-like prophage genomes; rings 31 to 33, the %GC content of the reference genome. The graph on the right shows the comparative genomics of the core prophage genomes (percent identity of the core genome of the prophages in each group). (DOCX 3531 kb