Additional file 6: Table S5. SignalP annotated genes with bi-modal expression pattern. File with the genes (annotated as having a signal peptide) that were identified as generally having a bi-modal pattern on ILS and a mono-modal pattern on KMS. The dataset of de Souza et al. [30] was used to indicate whether the CAZy genes with the bi-modal expression pattern were regulated by XlnR and/or AraR transcription factors
Background: Saprobic fungi are the predominant industrial sources of Carbohydrate Active enZymes (CA...
Additional file 7: Table S4. List of the core set of genes differentially highly transcribed at Day ...
Additional file 5. Specificity of the ΔxlnR response patterns on xylose, xylan and straw. Substrate-...
Additional file 13: Table S10. CAZy, transcription factor and sugar transporter content of MFuzz clu...
Additional file 12: Table S9. File with FPKM values and DESeq2 statistics for all samples. The file ...
BackgroundThe capacity of fungi, such as Aspergillus niger, to degrade lignocellulose is harnessed i...
Background The capacity of fungi, such as Aspergillus niger, to degrade lignocellulose is harness...
Additional file 5: Figure S2. KOG classification of the genes differentially highly transcribed afte...
Additional file 6. Specificity of the xlnR+ response patterns on xylose, xylan and straw. Substrate–...
Additional file 6: Table S3. CAZyme coding genes present in nodes with mean log2 read counts < 12 in...
Additional file 1: Table S1. All differentially expressed genes in the process of glucoamylase ferme...
Aspergillus comprises a genus of multicellular eukaryotic microorganisms containing close to 200 dif...
Additional file 3. Quantitative PCR analysis of cellulase and hemi-cellulase gene expression levels....
Additional file 6: Table S6. Details of the upregulated genes and all FPKM values in S1/S3 at 40 h
Background: Research on filamentous fungi emphasized the remarkable redundancy in genes encoding hyd...
Background: Saprobic fungi are the predominant industrial sources of Carbohydrate Active enZymes (CA...
Additional file 7: Table S4. List of the core set of genes differentially highly transcribed at Day ...
Additional file 5. Specificity of the ΔxlnR response patterns on xylose, xylan and straw. Substrate-...
Additional file 13: Table S10. CAZy, transcription factor and sugar transporter content of MFuzz clu...
Additional file 12: Table S9. File with FPKM values and DESeq2 statistics for all samples. The file ...
BackgroundThe capacity of fungi, such as Aspergillus niger, to degrade lignocellulose is harnessed i...
Background The capacity of fungi, such as Aspergillus niger, to degrade lignocellulose is harness...
Additional file 5: Figure S2. KOG classification of the genes differentially highly transcribed afte...
Additional file 6. Specificity of the xlnR+ response patterns on xylose, xylan and straw. Substrate–...
Additional file 6: Table S3. CAZyme coding genes present in nodes with mean log2 read counts < 12 in...
Additional file 1: Table S1. All differentially expressed genes in the process of glucoamylase ferme...
Aspergillus comprises a genus of multicellular eukaryotic microorganisms containing close to 200 dif...
Additional file 3. Quantitative PCR analysis of cellulase and hemi-cellulase gene expression levels....
Additional file 6: Table S6. Details of the upregulated genes and all FPKM values in S1/S3 at 40 h
Background: Research on filamentous fungi emphasized the remarkable redundancy in genes encoding hyd...
Background: Saprobic fungi are the predominant industrial sources of Carbohydrate Active enZymes (CA...
Additional file 7: Table S4. List of the core set of genes differentially highly transcribed at Day ...
Additional file 5. Specificity of the ΔxlnR response patterns on xylose, xylan and straw. Substrate-...