Publication date
February 2017
DOIAbstract
This is R code to run the TreePar analysis (optimizing the likelihood on speciation/extinction shifts). Also included is a loop for comparing TreePar models across a set of trees
This is R code to run the TreePar analysis (optimizing the likelihood on speciation/extinction shifts). Also included is a loop for comparing TreePar models across a set of trees
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Requires species-level data on the proportions of trees in different liana cover classes, and the es...
R code demonstrating the use of the flow algorithm for fitting dSSE models to large phylogenetic tre...
This code was used to filter occurrences data and tune models using spThin and ENMeval packages. It ...
This is R code to run the TreePar analysis (optimizing the likelihood on speciation/extinction shift...
R-code used for all tree and phenotypic data simulations, and for fitting different models to the si...
R code required to calculate Phylogenetic Independent Contrasts, merge datasets and run all pairwise...
R code used to compute and compare evolutionary diversity metrics in each ecoregion before and after...
Programming code for R used when comparing the growth data of the sterility and reporter trees to th...
<p>Sample data for use with clustering code. NOTE!! this tree came from a tutorial on phylogenetics....
R code for data analysis of N stocks and accumulation rates across many boreal forest sites.</p
Comparing independent, partial pooling, and phylogeny-informed ecological niche model
R code used for statistical analysis in "Weed community composition in simple and more diverse cropp...
This R script grabs all sister pairs from across a sample of trees,computes the average branch lengt...
This file contains R code for the data analyzed in the paper from Frontiers in Ecology and Evolution...
This R code provides the functions necessary to run a TESS analysis, investigating the timing and fr...
Requires species-level data on the proportions of trees in different liana cover classes, and the es...
R code demonstrating the use of the flow algorithm for fitting dSSE models to large phylogenetic tre...
This code was used to filter occurrences data and tune models using spThin and ENMeval packages. It ...
This is R code to run the TreePar analysis (optimizing the likelihood on speciation/extinction shift...
R-code used for all tree and phenotypic data simulations, and for fitting different models to the si...
R code required to calculate Phylogenetic Independent Contrasts, merge datasets and run all pairwise...
R code used to compute and compare evolutionary diversity metrics in each ecoregion before and after...
Programming code for R used when comparing the growth data of the sterility and reporter trees to th...
<p>Sample data for use with clustering code. NOTE!! this tree came from a tutorial on phylogenetics....
R code for data analysis of N stocks and accumulation rates across many boreal forest sites.</p
Comparing independent, partial pooling, and phylogeny-informed ecological niche model
R code used for statistical analysis in "Weed community composition in simple and more diverse cropp...
This R script grabs all sister pairs from across a sample of trees,computes the average branch lengt...
This file contains R code for the data analyzed in the paper from Frontiers in Ecology and Evolution...
This R code provides the functions necessary to run a TESS analysis, investigating the timing and fr...
Requires species-level data on the proportions of trees in different liana cover classes, and the es...
R code demonstrating the use of the flow algorithm for fitting dSSE models to large phylogenetic tre...
This code was used to filter occurrences data and tune models using spThin and ENMeval packages. It ...
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