Additional file 4: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

Additional file 5: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

List of predicted effector genes in lupin-infecting isolates of Botrytis cinerea and Sclerotinia scl...

Additional file 6: of Trichoderma polysporum selectively inhibits white-nose syndrome fungal pathogen Pseudogymnoascus destructans amidst soil microbes

Amanpreet Singh (541913)
Erica Lasek-Nesselquist (142866)
Vishnu Chaturvedi (228539)
Sudha Chaturvedi (228530)

August 2018

DESeq2 analysis of changes in the abundance of fungal phyla in soil from bat hibernacula with or wit...

Additional file 17: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Paula Moolhuijzen (171379)
Pao See (5132903)
James Hane (3539561)
Gongjun Shi (5132906)
Zhaohui Liu (189380)
Richard Oliver (2411857)
Caroline Moffat (5132900)

April 2018

Predicted effector homolog gene counts in Ptr. Heatmap shows M4 predicted effectors (Effectorp proba...

Additional file 2: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

Paulina Guzmรกn-Guzmรกn (3751471)
Mario Alemรกn-Duarte (3751474)
Luis Delaye (141699)
Alfredo Herrera-Estrella (141707)
Vianey Olmedo-Monfil (3751465)

February 2017

Datasets. Lists of proteins that constitute the negative, positive and evaluation datasets used for ...

Additional file 7: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Figure S1. The putative conidial pigment PKS gene clusters of Trichoderma spp. Numbers over the arro...

Additional file 6: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Table S2. Terpene synthase (TS), non-ribosomal peptide synthetase (NRPS), polyketide synthase (PKS) ...

Additional file 5: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Table S1. Comparative analysis of PFAM domains associated to CAZYmes in Trichoderma spp. (XLSX 42Â k...

Additional file 3: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

The file contains gene coordinates of Trichoderma atrobrunneum ITEM 908. (GTF 26492Â kb

Additional file 3: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

Paulina Guzmán-Guzmán (3751462)
Mario Alemán-Duarte (3751468)
Luis Delaye (141699)
Alfredo Herrera-Estrella (141707)
Vianey Olmedo-Monfil (3751465)

February 2017

Program performance evaluation. Program performance evaluation of different algorithms tested for th...

Additional file 2: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Trichoderma atrobrunneum ITEM 908 protein sequences: the file contains the multifasta of the protein...

Additional file 9: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Table S3. Trichoderma spp. and genomic sequences accession used in this study. (DOCX 13Â kb

Additional file 1: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

The file contains the multi sequence alignment of ITS-TEF1 concatenated datasets used for the phylog...

Additional file 8: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Figure S2. Ferricrocin gene cluster in T. atrobrunneum ITEM 908. ALDH: aldehyde dehydrogenase; OXD: ...

Additional file 6: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

Si-Qi Tao (4384186)
Bin Cao (186972)
Cheng-Ming Tian (838397)
Ying-Mei Liang (4384189)

August 2017

Candidate effectors. This file provides the small secreted proteins and candidate effectors predicte...

Additional file 4: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

The file contains the PFAM functional domains of Trichoderma atrobrunneum ITEM 908 predicted by the ...

Additional file 5: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

List of predicted effector genes in lupin-infecting isolates of Botrytis cinerea and Sclerotinia scl...

Additional file 6: of Trichoderma polysporum selectively inhibits white-nose syndrome fungal pathogen Pseudogymnoascus destructans amidst soil microbes

Amanpreet Singh (541913)
Erica Lasek-Nesselquist (142866)
Vishnu Chaturvedi (228539)
Sudha Chaturvedi (228530)

August 2018

DESeq2 analysis of changes in the abundance of fungal phyla in soil from bat hibernacula with or wit...

Additional file 17: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Paula Moolhuijzen (171379)
Pao See (5132903)
James Hane (3539561)
Gongjun Shi (5132906)
Zhaohui Liu (189380)
Richard Oliver (2411857)
Caroline Moffat (5132900)

April 2018

Predicted effector homolog gene counts in Ptr. Heatmap shows M4 predicted effectors (Effectorp proba...

Additional file 2: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

Paulina Guzmรกn-Guzmรกn (3751471)
Mario Alemรกn-Duarte (3751474)
Luis Delaye (141699)
Alfredo Herrera-Estrella (141707)
Vianey Olmedo-Monfil (3751465)

February 2017

Datasets. Lists of proteins that constitute the negative, positive and evaluation datasets used for ...

Additional file 7: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Figure S1. The putative conidial pigment PKS gene clusters of Trichoderma spp. Numbers over the arro...

Additional file 6: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Table S2. Terpene synthase (TS), non-ribosomal peptide synthetase (NRPS), polyketide synthase (PKS) ...

Additional file 5: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Table S1. Comparative analysis of PFAM domains associated to CAZYmes in Trichoderma spp. (XLSX 42Â k...

Additional file 3: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

The file contains gene coordinates of Trichoderma atrobrunneum ITEM 908. (GTF 26492Â kb

Additional file 3: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

Paulina Guzmán-Guzmán (3751462)
Mario Alemán-Duarte (3751468)
Luis Delaye (141699)
Alfredo Herrera-Estrella (141707)
Vianey Olmedo-Monfil (3751465)

February 2017

Program performance evaluation. Program performance evaluation of different algorithms tested for th...

Additional file 2: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Trichoderma atrobrunneum ITEM 908 protein sequences: the file contains the multifasta of the protein...

Additional file 9: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Table S3. Trichoderma spp. and genomic sequences accession used in this study. (DOCX 13Â kb

Additional file 1: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

The file contains the multi sequence alignment of ITS-TEF1 concatenated datasets used for the phylog...

Additional file 8: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

Figure S2. Ferricrocin gene cluster in T. atrobrunneum ITEM 908. ALDH: aldehyde dehydrogenase; OXD: ...

Additional file 6: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

Si-Qi Tao (4384186)
Bin Cao (186972)
Cheng-Ming Tian (838397)
Ying-Mei Liang (4384189)

August 2017

Candidate effectors. This file provides the small secreted proteins and candidate effectors predicte...

Additional file 4: of Genomic characterization of Trichoderma atrobrunneum (T. harzianum species complex) ITEM 908: insight into the genetic endowment of a multi-target biocontrol strain

Francesca Fanelli (76457)
Vania Liuzzi (5734874)
Antonio Logrieco (3061605)
Claudio Altomare (2437258)

September 2018

The file contains the PFAM functional domains of Trichoderma atrobrunneum ITEM 908 predicted by the ...

Additional file 5: of Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

Mahsa Mousavi-Derazmahalleh (6524222)
Steven Chang (271406)
Geoff Thomas (5716226)
Mark Derbyshire (6712010)
Phillip Bayer (6712016)
David Edwards (5663)
Matthew Nelson (1902790)
William Erskine (1806280)
Francisco Lopez-Ruiz (6712022)
Jon Clements (614685)
James Hane (3539561)

May 2019

List of predicted effector genes in lupin-infecting isolates of Botrytis cinerea and Sclerotinia scl...

Additional file 6: of Trichoderma polysporum selectively inhibits white-nose syndrome fungal pathogen Pseudogymnoascus destructans amidst soil microbes

Amanpreet Singh (541913)
Erica Lasek-Nesselquist (142866)
Vishnu Chaturvedi (228539)
Sudha Chaturvedi (228530)

August 2018

DESeq2 analysis of changes in the abundance of fungal phyla in soil from bat hibernacula with or wit...

Additional file 17: of Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity

Paula Moolhuijzen (171379)
Pao See (5132903)
James Hane (3539561)
Gongjun Shi (5132906)
Zhaohui Liu (189380)
Richard Oliver (2411857)
Caroline Moffat (5132900)

April 2018

Predicted effector homolog gene counts in Ptr. Heatmap shows M4 predicted effectors (Effectorp proba...

Additional file 4: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

Abstract

Extracted data

Additional file 4: of Identification of effector-like proteins in Trichoderma spp. and role of a hydrophobin in the plant-fungus interaction and mycoparasitism

Abstract

Extracted data

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