Additional file 2 of Making life difficult for Clostridium difficile: augmenting the pathogenâs metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile.

Arrieta-Ortiz, Mario L
Immanuel, Selva Rupa Christinal
Turkarslan, Serdar
Wu, Wei-Ju
Girinathan, Brintha P
Worley, Jay N
DiBenedetto, Nicholas
Soutourina, Olga
Peltier, Johann
Dupuy, Bruno
Bry, Lynn
Baliga, Nitin S

November 2021

We present predictive models for comprehensive systems analysis of Clostridioides difficile, the eti...

Table_1_A Metabolic Labeling Strategy for Relative Protein Quantification in Clostridioides difficile.docx

Anke Trautwein-Schult (5859125)
Sandra Maaß (5859128)
Kristina Plate (1662229)
Andreas Otto (204448)
Dörte Becher (90765)

October 2018

Clostridioides difficile (formerly Clostridium difficile) is a Gram-positive, anaerobe, spore-formin...

Table_6_A Metabolic Labeling Strategy for Relative Protein Quantification in Clostridioides difficile.XLSX

Anke Trautwein-Schult (5859125)
Sandra Maaß (5859128)
Kristina Plate (1662229)
Andreas Otto (204448)
Dörte Becher (90765)

October 2018

Clostridioides difficile (formerly Clostridium difficile) is a Gram-positive, anaerobe, spore-formin...

Additional file 1 of Making life difficult for Clostridium difficile: augmenting the pathogenâs metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Sara Saheb Kashaf (3755179)
Claudio Angione (796724)
Pietro LiĂł (3755239)

February 2017

Carbon source usage, carboxylic acids secreted, and essential amino acids in icdf834 as compared wit...

Additional file 1 of Making life difficult for Clostridium difficile: augmenting the pathogenâ s metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Kashaf, Sara Saheb
Angione, Claudio
Lió, Pietro
Teesside University
University of Cambridge

January 2017

Carbon source usage, carboxylic acids secreted, and essential amino acids in icdf834 as compared wit...

Making life difficult for Clostridium difficile: augmenting the pathogen's metabolic model with transcriptomic and codon usage data for better therapeutic target characterization.

Kashaf, SS
Angione, C
Lio, Pietro

February 2017

BACKGROUND: Clostridium difficile is a bacterium which can infect various animal species, including ...

Making life difficult for Clostridium difficile: augmenting the pathogen’s metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Kashaf, Sara Saheb
Angione, Claudio
Lió, Pietro
Teesside University
University of Cambridge

January 2017

Abstract Background Clostridium difficile is a bacterium which can infect various animal species, in...

Table_2_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.XLSX

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Table_3_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.XLSX

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Table_1_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.XLSX

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Additional file 1: of Time-resolved amino acid uptake of Clostridium difficile 630Îerm and concomitant fermentation product and toxin formation

Meina Neumann-Schaal (3399446)
Julia Hofmann (3399443)
Sabine Will (3399440)
Dietmar Schomburg (19141)

December 2015

Substrate consumption in CDMM. Plotted were relative abundances based on peak areas (except glucose)...

Image_2_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.JPEG

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Title: A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors

Mathieu Larocque
Thierry Chénard
Rafael Najmanovich

October 2016

Running title: C. difficile reconstructed metabolic network. CC-BY 4.0 International licensepeer-rev...

Image_3_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.JPEG

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Additional file 2: of Time-resolved amino acid uptake of Clostridium difficile 630Îerm and concomitant fermentation product and toxin formation

Meina Neumann-Schaal (3399446)
Julia Hofmann (3399443)
Sabine Will (3399440)
Dietmar Schomburg (19141)

December 2015

Substrate consumption and product formation in MDM. Plotted were relative abundances based on peak a...

Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile.

Arrieta-Ortiz, Mario L
Immanuel, Selva Rupa Christinal
Turkarslan, Serdar
Wu, Wei-Ju
Girinathan, Brintha P
Worley, Jay N
DiBenedetto, Nicholas
Soutourina, Olga
Peltier, Johann
Dupuy, Bruno
Bry, Lynn
Baliga, Nitin S

November 2021

We present predictive models for comprehensive systems analysis of Clostridioides difficile, the eti...

Table_1_A Metabolic Labeling Strategy for Relative Protein Quantification in Clostridioides difficile.docx

Anke Trautwein-Schult (5859125)
Sandra Maaß (5859128)
Kristina Plate (1662229)
Andreas Otto (204448)
Dörte Becher (90765)

October 2018

Clostridioides difficile (formerly Clostridium difficile) is a Gram-positive, anaerobe, spore-formin...

Table_6_A Metabolic Labeling Strategy for Relative Protein Quantification in Clostridioides difficile.XLSX

Anke Trautwein-Schult (5859125)
Sandra Maaß (5859128)
Kristina Plate (1662229)
Andreas Otto (204448)
Dörte Becher (90765)

October 2018

Clostridioides difficile (formerly Clostridium difficile) is a Gram-positive, anaerobe, spore-formin...

Additional file 1 of Making life difficult for Clostridium difficile: augmenting the pathogenâs metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Sara Saheb Kashaf (3755179)
Claudio Angione (796724)
Pietro LiĂł (3755239)

February 2017

Carbon source usage, carboxylic acids secreted, and essential amino acids in icdf834 as compared wit...

Additional file 1 of Making life difficult for Clostridium difficile: augmenting the pathogenâ s metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Kashaf, Sara Saheb
Angione, Claudio
Lió, Pietro
Teesside University
University of Cambridge

January 2017

Carbon source usage, carboxylic acids secreted, and essential amino acids in icdf834 as compared wit...

Making life difficult for Clostridium difficile: augmenting the pathogen's metabolic model with transcriptomic and codon usage data for better therapeutic target characterization.

Kashaf, SS
Angione, C
Lio, Pietro

February 2017

BACKGROUND: Clostridium difficile is a bacterium which can infect various animal species, including ...

Making life difficult for Clostridium difficile: augmenting the pathogen’s metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Kashaf, Sara Saheb
Angione, Claudio
Lió, Pietro
Teesside University
University of Cambridge

January 2017

Abstract Background Clostridium difficile is a bacterium which can infect various animal species, in...

Table_2_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.XLSX

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Table_3_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.XLSX

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Table_1_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.XLSX

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Additional file 1: of Time-resolved amino acid uptake of Clostridium difficile 630Îerm and concomitant fermentation product and toxin formation

Meina Neumann-Schaal (3399446)
Julia Hofmann (3399443)
Sabine Will (3399440)
Dietmar Schomburg (19141)

December 2015

Substrate consumption in CDMM. Plotted were relative abundances based on peak areas (except glucose)...

Image_2_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.JPEG

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Title: A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors

Mathieu Larocque
Thierry Chénard
Rafael Najmanovich

October 2016

Running title: C. difficile reconstructed metabolic network. CC-BY 4.0 International licensepeer-rev...

Image_3_Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production.JPEG

Julia D. Hofmann (5182013)
Andreas Otto (204448)
Mareike Berges (5648108)
Rebekka Biedendieck (282150)
Annika-Marisa Michel (5648111)
Dörte Becher (90765)
Dieter Jahn (9897)
Meina Neumann-Schaal (3399446)

August 2018

The obligate anaerobe, spore forming bacterium Clostridioides difficile (formerly Clostridium diffic...

Additional file 2: of Time-resolved amino acid uptake of Clostridium difficile 630Îerm and concomitant fermentation product and toxin formation

Meina Neumann-Schaal (3399446)
Julia Hofmann (3399443)
Sabine Will (3399440)
Dietmar Schomburg (19141)

December 2015

Substrate consumption and product formation in MDM. Plotted were relative abundances based on peak a...

Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile.

Arrieta-Ortiz, Mario L
Immanuel, Selva Rupa Christinal
Turkarslan, Serdar
Wu, Wei-Ju
Girinathan, Brintha P
Worley, Jay N
DiBenedetto, Nicholas
Soutourina, Olga
Peltier, Johann
Dupuy, Bruno
Bry, Lynn
Baliga, Nitin S

November 2021

We present predictive models for comprehensive systems analysis of Clostridioides difficile, the eti...

Table_1_A Metabolic Labeling Strategy for Relative Protein Quantification in Clostridioides difficile.docx

Anke Trautwein-Schult (5859125)
Sandra Maaß (5859128)
Kristina Plate (1662229)
Andreas Otto (204448)
Dörte Becher (90765)

October 2018

Clostridioides difficile (formerly Clostridium difficile) is a Gram-positive, anaerobe, spore-formin...

Table_6_A Metabolic Labeling Strategy for Relative Protein Quantification in Clostridioides difficile.XLSX

Anke Trautwein-Schult (5859125)
Sandra Maaß (5859128)
Kristina Plate (1662229)
Andreas Otto (204448)
Dörte Becher (90765)

October 2018

Clostridioides difficile (formerly Clostridium difficile) is a Gram-positive, anaerobe, spore-formin...

Additional file 2 of Making life difficult for Clostridium difficile: augmenting the pathogenâs metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Abstract

Extracted data

Additional file 2 of Making life difficult for Clostridium difficile: augmenting the pathogenâs metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Abstract

Extracted data

Related items

Related items

Additional file 2 of Making life difficult for Clostridium difficile: augmenting the pathogenâs metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Abstract

Extracted data

Additional file 2 of Making life difficult for Clostridium difficile: augmenting the pathogenâs metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Abstract

Extracted data

Related items

Related items

Additional file 2 of Making life difficult for Clostridium difficile: augmenting the pathogenâs metabolic model with transcriptomic and codon usage data for better therapeutic target characterization

Additional file 2 of Making life difficult for Clostridium difficile: augmenting the pathogenâs metabolic model with transcriptomic and codon usage data for better therapeutic target characterization