<p><b>(A)</b> HMR ChIP tag enrichment at repetitive DNA elements. To identify enriched sequences the enrichment (log2-fold) over input is plotted against the RPKM of an individual repeat sequence from RepBase. Repeats with less than 2-fold enrichment are not displayed. <b>(B)</b> ChIP tag density of HMR and the <i>gypsy</i>-insulator proteins CP190, Mod(mdg4), Su(Hw) [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0171798#pone.0171798.ref039" target="_blank">39</a>] across the repetitive <i>gypsy</i> retrotransposon sequence. The <i>gypsy</i> insulator sequence at the 5' end is highlighted in <i>green</i>.</p
Repetitive DNA is ubiquitous in eukaryotic genomes, and, in many species, comprises the bulk of the ...
(a) distribution of feature elements per chromosome; (b) a screenshot showing the alignment of repet...
<p>A) Fraction of p53 ChIP-seq and Inp-seq peaks in repeats. B) Repeat categories identified by Repe...
<p><b>(A)</b> Sequence motifs identified within HMR peak regions. The corresponding motif logo, p-va...
(A) Heatmaps of ChIP-seq profiles (z-score normalized) centred at high confidence FLAG-HMR peaks in ...
<p>About half of our DNA bears homology to known classes of repeats (left chart). The largest class ...
We describe computational methods for analysis of repetitive elements from short-read sequencing dat...
<p>(A) Genome-wide correlation heatmap for all samples (including replicate c of Hmga1) and AT conte...
a<p>The number of repeats of this type as found in the nucleotide sequence of M.HaeIII's gene.</p>b<...
95 p.Thesis (Ph.D.)--University of Illinois at Urbana-Champaign, 2002.This study investigated the re...
<p><b>(A)</b> Heatmaps of HMR, HP1a, BEAF-32 [<a href="http://www.plosone.org/article/info:doi/10.13...
<p>(A) ∼2/3 of DUX4 binding-sites are in repetitive elements, compared to ∼45% of the human genome. ...
Most histone modifications can easily be characterized as either activating or repressive. For examp...
Repeat elements in the RepeatScout library were classified into High, Mid and Low classes based on t...
Abstract Background Repetitive DNA sequences (Repeats) are significant regions in the human genome t...
Repetitive DNA is ubiquitous in eukaryotic genomes, and, in many species, comprises the bulk of the ...
(a) distribution of feature elements per chromosome; (b) a screenshot showing the alignment of repet...
<p>A) Fraction of p53 ChIP-seq and Inp-seq peaks in repeats. B) Repeat categories identified by Repe...
<p><b>(A)</b> Sequence motifs identified within HMR peak regions. The corresponding motif logo, p-va...
(A) Heatmaps of ChIP-seq profiles (z-score normalized) centred at high confidence FLAG-HMR peaks in ...
<p>About half of our DNA bears homology to known classes of repeats (left chart). The largest class ...
We describe computational methods for analysis of repetitive elements from short-read sequencing dat...
<p>(A) Genome-wide correlation heatmap for all samples (including replicate c of Hmga1) and AT conte...
a<p>The number of repeats of this type as found in the nucleotide sequence of M.HaeIII's gene.</p>b<...
95 p.Thesis (Ph.D.)--University of Illinois at Urbana-Champaign, 2002.This study investigated the re...
<p><b>(A)</b> Heatmaps of HMR, HP1a, BEAF-32 [<a href="http://www.plosone.org/article/info:doi/10.13...
<p>(A) ∼2/3 of DUX4 binding-sites are in repetitive elements, compared to ∼45% of the human genome. ...
Most histone modifications can easily be characterized as either activating or repressive. For examp...
Repeat elements in the RepeatScout library were classified into High, Mid and Low classes based on t...
Abstract Background Repetitive DNA sequences (Repeats) are significant regions in the human genome t...
Repetitive DNA is ubiquitous in eukaryotic genomes, and, in many species, comprises the bulk of the ...
(a) distribution of feature elements per chromosome; (b) a screenshot showing the alignment of repet...
<p>A) Fraction of p53 ChIP-seq and Inp-seq peaks in repeats. B) Repeat categories identified by Repe...