Supplemental Table 3: Number of UCE loci enriched, total number of base pairs in all UCE loci, mean length of UCE loci, 95 CI of UCE locus length, minimum UCE locus length, maximum UCE locus length, median UCE locus length, number of UCE loci having a length > 1 Kb, UCE locus coverage, percentage of reads on-target, and percentage of on-target reads that were unique from reads assembled, by platform, from ostariophysan libraries enriched for UCEs (table also includes outgroup taxa, indicated with an asterisk). We collected Danio rerio UCE data from the danRer7 genome assembly
1<p>Potential paralogs that were removed from the data set.</p>2<p>The number of contigs aligned to ...
Individual UCE loci alignments that are common to at least 75% of taxa in the reduced dataset of Gym...
Of the assembled contigs in 1-All-Assembled-Contigs.tar.gz, these are the loci, for each species, th...
Supplemental Table 3: Number of UCE loci enriched, total number of base pairs in all UCE loci, mean ...
UCE loci extracted from available genome-enabled Hymenoptera. Each UCE locus consists of a core regi...
Excel file containing information on each UCE locus used in this study. This information includes: l...
Supplemental Table 2: Number of contigs assembled, total number of base pairs sequenced, mean contig...
UCE contigs extracted from genome-enabled taxa and used in some analyses. Files can be used to add g...
Supplemental Table 1: Number of reads, total number of base pairs sequenced, mean length of adapter-...
Histograms depicting variation across ultraconserved elements (UCEs) generated for this study. (A–C)...
Targeted enrichment of conserved genomic regions is a popular method for collecting large amounts of...
All loci assembled from baited reads (per taxa). These sequences were then compared in an all-vs-al...
UCE alignments containing a minimum of 41 of our 55 sampled taxa. Total of 1014 UCE loci alignments...
FIGURE S4. Estimates of gene trees for individual UCEs are poorly resolved. Box plot showing the num...
Results of species tree analyses (both bootstraps and summarized tree) using PhyML gene trees as inp...
1<p>Potential paralogs that were removed from the data set.</p>2<p>The number of contigs aligned to ...
Individual UCE loci alignments that are common to at least 75% of taxa in the reduced dataset of Gym...
Of the assembled contigs in 1-All-Assembled-Contigs.tar.gz, these are the loci, for each species, th...
Supplemental Table 3: Number of UCE loci enriched, total number of base pairs in all UCE loci, mean ...
UCE loci extracted from available genome-enabled Hymenoptera. Each UCE locus consists of a core regi...
Excel file containing information on each UCE locus used in this study. This information includes: l...
Supplemental Table 2: Number of contigs assembled, total number of base pairs sequenced, mean contig...
UCE contigs extracted from genome-enabled taxa and used in some analyses. Files can be used to add g...
Supplemental Table 1: Number of reads, total number of base pairs sequenced, mean length of adapter-...
Histograms depicting variation across ultraconserved elements (UCEs) generated for this study. (A–C)...
Targeted enrichment of conserved genomic regions is a popular method for collecting large amounts of...
All loci assembled from baited reads (per taxa). These sequences were then compared in an all-vs-al...
UCE alignments containing a minimum of 41 of our 55 sampled taxa. Total of 1014 UCE loci alignments...
FIGURE S4. Estimates of gene trees for individual UCEs are poorly resolved. Box plot showing the num...
Results of species tree analyses (both bootstraps and summarized tree) using PhyML gene trees as inp...
1<p>Potential paralogs that were removed from the data set.</p>2<p>The number of contigs aligned to ...
Individual UCE loci alignments that are common to at least 75% of taxa in the reduced dataset of Gym...
Of the assembled contigs in 1-All-Assembled-Contigs.tar.gz, these are the loci, for each species, th...