Comparison of class level taxonomic distribution of proteobacterial reads between V1-V3 and V3-V4 target regions.

Niranjan Nitin Parulekar (3830101)
Pandurang Kolekar (3830113)
Andrew Jenkins (2600980)
Synne Kleiven (3830110)
Hans Utkilen (3830107)
Anette Johansen (3830104)
Sangeeta Sawant (3830095)
Urmila Kulkarni-Kale (10113)
Mohan Kale (3830098)
Mona Sæbø (21236)

Open link

Publication date

March 2017

DOI

10.1371/journal.pone.0173408.t004

Abstract

Comparison of class level taxonomic distribution of proteobacterial reads between V1-V3 and V3-V4 target regions.</p

Extracted data

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Comparison of class level taxonomic distribution of proteobacterial reads between V1-V3 and V3-V4 target regions.

Niranjan Nitin Parulekar (3830101)
Pandurang Kolekar (3830113)
Andrew Jenkins (2600980)
Synne Kleiven (3830110)
Hans Utkilen (3830107)
Anette Johansen (3830104)
Sangeeta Sawant (3830095)
Urmila Kulkarni-Kale (10113)
Mohan Kale (3830098)
Mona Sæbø (21236)

Open link

Publication date

March 2017

DOI

10.1371/journal.pone.0173408.t004

Abstract

Comparison of class level taxonomic distribution of proteobacterial reads between V1-V3 and V3-V4 target regions.</p

Extracted data

Leah C. Blasiak (510919)
Alex W. Schmidt (510920)
Honoré Andriamiarinoro (510921)
Temesgen Mulaw (510922)
Rado Rasolomampianina (510923)
Wendy L. Applequist (510924)
Chris Birkinshaw (510925)
Félicitée Rejo-Fienena (510926)
Porter P. Lowry II (510927)
Thomas M. Schmidt (510928)
Russell T. Hill (426522)

January 2014

Sequences in 3% OTUs were classified and grouped at the phylum level, with Proteobacteria ...

Vertical distribution of taxonomic assignments.

Harald Schunck (448854)
Gaute Lavik (336677)
Dhwani K. Desai (448855)
Tobias Großkopf (362107)
Tim Kalvelage (336668)
Carolin R. Löscher (448856)
Aurélien Paulmier (448857)
Sergio Contreras (336671)
Herbert Siegel (448858)
Moritz Holtappels (448859)
Philip Rosenstiel (68103)
Markus B. Schilhabel (127863)
Michelle Graco (190980)
Ruth A. Schmitz (448860)
Marcel M. M. Kuypers (336680)
Julie LaRoche (235849)

August 2013

Shown on either domain, phylum or class level. (A) rRNA genes in percent of all rRNA genes (5,923...

Bacterial phylotypes at the Class level with differing abundance between Vohibe high impact (V1) and low impact (V2) sites (Metastats p<0.05).

Leah C. Blasiak (510919)
Alex W. Schmidt (510920)
Honoré Andriamiarinoro (510921)
Temesgen Mulaw (510922)
Rado Rasolomampianina (510923)
Wendy L. Applequist (510924)
Chris Birkinshaw (510925)
Félicitée Rejo-Fienena (510926)
Porter P. Lowry II (510927)
Thomas M. Schmidt (510928)
Russell T. Hill (426522)

January 2014

Bacterial phylotypes at the Class level with differing abundance between Vohibe high impact (V1) ...

Class/Division - level distribution of sequences affiliated to the phylum Proteobacteria based on the 16S rRNA gene clone libraries from anaerobic- aerobic reactors and three constructed wetland sites.

Adey Feleke Desta (679102)
Fassil Assefa (679103)
Seyoum Leta (679104)
Francesca Stomeo (679105)
Mark Wamalwa (679106)
Moses Njahira (679107)
Djikeng Appolinaire (679108)

December 2014

Class/Division - level distribution of sequences affiliated to the phylum Proteobacteria based on...

Taxonomic distribution of reads at the phylum level for each experimental group.

Mathieu Landry (833976)
André M. Comeau (152895)
Nicolas Derome (2201653)
Michel Cusson (248211)
Roger C. Levesque (31500)

December 2015

Taxonomic distribution of reads at the phylum level for each experimental group.</p

Taxonomic distribution of CRISPR-Cas types and sub-types in prokaryotes expressed in number and percentage of the genomes harboring the systems.

Sophie S. Abby (131993)
Bertrand Néron (646637)
Hervé Ménager (646638)
Marie Touchon (118515)
Eduardo P. C. Rocha (7388)

October 2014

Taxonomic distribution of CRISPR-Cas types and sub-types in prokaryotes expressed in number and p...

Relative abundance of the dominant bacterial phyla and proteobacterial classes identified through pyrosequencing targeting the 16S rRNA gene.

Peng Wu (210686)
Xiaofei Xiong (3190677)
Zhanzhou Xu (2262331)
Chuqian Lu (3190674)
Hao Cheng (103394)
Xiangli Lyu (3190680)
Jinghuai Zhang (3190668)
Wei He (131453)
Wei Deng (17330)
Yihua Lyu (595159)
Quansheng Lou (3190671)
Yiguo Hong (89769)
Hongda Fang (436228)

October 2016

Relative abundance of the dominant bacterial phyla and proteobacterial classes identified through...

Ternary plot of distribution of bacterial taxonomic groups among sample types in the second experiment.

Max E. Winston (578690)
Jarrad Hampton-Marcell (439920)
Iratxe Zarraonaindia (146803)
Sarah M. Owens (512539)
Corrie S. Moreau (111971)
Jack A. Gilbert (53472)
Josh Hartsel (578691)
Suzanne J. Kennedy (578692)
S. M. Gibbons (578693)

June 2014

Size of circles proportional to the log of the total abundance, taxonomic groups are all phylum-l...

The relative frequencies of the different classes found in Cerrado (CE), Green Cane (GC) and Burnt Cane (BC) samples for the following phyla: A – Acidobacteria, B – Proteobacteria, C – Actinobacteria.

Caio T. C. C. Rachid (393251)
Adriana L. Santos (195305)
Marisa C. Piccolo (393252)
Fabiano C. Balieiro (393253)
Heitor L. C. Coutinho (393254)
Raquel S. Peixoto (231673)
James M. Tiedje (14711)
Alexandre S. Rosado (195326)

March 2013

The relative frequencies of the different classes found in Cerrado (CE), Green Cane (GC) and Burn...

Taxonomic classification of bacterial reads retrieved from different wells at phylum (A) and genus (B) levels from 16S rRNA gene pyrosequencing.

Nesrine Lenchi (425064)
Özgül İnceoğlu (208805)
Salima Kebbouche-Gana (425065)
Mohamed Lamine Gana (425066)
Marc Llirós (425067)
Pierre Servais (425068)
Tamara García-Armisen (425069)

June 2013

Taxonomic classification of bacterial reads retrieved from different wells at phylum (A) and genu...

Comparison of the taxonomic distribution of virulence genes and randomly selected genes of B. melitensis 16 M within Proteobacteria group.

Aniel Jessica Leticia Brambila-Tapia (588553)
Dagoberto Armenta-Medina (588554)
Nancy Rivera-Gomez (588555)
Ernesto Perez-Rueda (3273120)

June 2014

N = Number, A.P.: adjusted percentage, this is the corresponding percentage of the number of ort...

Taxonomic comparison within Proteobacteria of total metagenomic sequences based on predicted proteins using BLASTX against different databases in MG-RAST v3.0 server.

Diego Javier Jiménez (113752)
Fernando Dini Andreote (113754)
Diego Chaves (113756)
José Salvador Montaña (113759)
Cesar Osorio-Forero (113760)
Howard Junca (113763)
María Mercedes Zambrano (113765)
Sandra Baena (113767)

December 2012

a) Gammaproteobacteria b) Alphaproteobacteria c) Betaproteobacteria.</p

Class level distribution of sequences affiliated to the phylum Bacteroidetes based on the 16S rRNA gene clone libraries from anaerobic- aerobic reactors and three constructed wetland sites.

Adey Feleke Desta (679102)
Fassil Assefa (679103)
Seyoum Leta (679104)
Francesca Stomeo (679105)
Mark Wamalwa (679106)
Moses Njahira (679107)
Djikeng Appolinaire (679108)

December 2014

Class level distribution of sequences affiliated to the phylum Bacteroidetes based on the 16S rRN...

Average relative abundance of dominant bacterial taxa by plot.

Leah C. Blasiak (510919)
Alex W. Schmidt (510920)
Honoré Andriamiarinoro (510921)
Temesgen Mulaw (510922)
Rado Rasolomampianina (510923)
Wendy L. Applequist (510924)
Chris Birkinshaw (510925)
Félicitée Rejo-Fienena (510926)
Porter P. Lowry II (510927)
Thomas M. Schmidt (510928)
Russell T. Hill (426522)

January 2014

Sequences in 3% OTUs were classified and grouped at the phylum level, with Proteobacteria ...

Vertical distribution of taxonomic assignments.

Harald Schunck (448854)
Gaute Lavik (336677)
Dhwani K. Desai (448855)
Tobias Großkopf (362107)
Tim Kalvelage (336668)
Carolin R. Löscher (448856)
Aurélien Paulmier (448857)
Sergio Contreras (336671)
Herbert Siegel (448858)
Moritz Holtappels (448859)
Philip Rosenstiel (68103)
Markus B. Schilhabel (127863)
Michelle Graco (190980)
Ruth A. Schmitz (448860)
Marcel M. M. Kuypers (336680)
Julie LaRoche (235849)

August 2013

Shown on either domain, phylum or class level. (A) rRNA genes in percent of all rRNA genes (5,923...

Bacterial phylotypes at the Class level with differing abundance between Vohibe high impact (V1) and low impact (V2) sites (Metastats p<0.05).

Leah C. Blasiak (510919)
Alex W. Schmidt (510920)
Honoré Andriamiarinoro (510921)
Temesgen Mulaw (510922)
Rado Rasolomampianina (510923)
Wendy L. Applequist (510924)
Chris Birkinshaw (510925)
Félicitée Rejo-Fienena (510926)
Porter P. Lowry II (510927)
Thomas M. Schmidt (510928)
Russell T. Hill (426522)

January 2014

Bacterial phylotypes at the Class level with differing abundance between Vohibe high impact (V1) ...

Adey Feleke Desta (679102)
Fassil Assefa (679103)
Seyoum Leta (679104)
Francesca Stomeo (679105)
Mark Wamalwa (679106)
Moses Njahira (679107)
Djikeng Appolinaire (679108)

December 2014

Class/Division - level distribution of sequences affiliated to the phylum Proteobacteria based on...

Relative abundance of the dominant bacterial phyla and proteobacterial classes identified through pyrosequencing targeting the 16S rRNA gene.

Peng Wu (210686)
Xiaofei Xiong (3190677)
Zhanzhou Xu (2262331)
Chuqian Lu (3190674)
Hao Cheng (103394)
Xiangli Lyu (3190680)
Jinghuai Zhang (3190668)
Wei He (131453)
Wei Deng (17330)
Yihua Lyu (595159)
Quansheng Lou (3190671)
Yiguo Hong (89769)
Hongda Fang (436228)

October 2016

Relative abundance of the dominant bacterial phyla and proteobacterial classes identified through...

Ternary plot of distribution of bacterial taxonomic groups among sample types in the second experiment.

Max E. Winston (578690)
Jarrad Hampton-Marcell (439920)
Iratxe Zarraonaindia (146803)
Sarah M. Owens (512539)
Corrie S. Moreau (111971)
Jack A. Gilbert (53472)
Josh Hartsel (578691)
Suzanne J. Kennedy (578692)
S. M. Gibbons (578693)

June 2014

Size of circles proportional to the log of the total abundance, taxonomic groups are all phylum-l...

Caio T. C. C. Rachid (393251)
Adriana L. Santos (195305)
Marisa C. Piccolo (393252)
Fabiano C. Balieiro (393253)
Heitor L. C. Coutinho (393254)
Raquel S. Peixoto (231673)
James M. Tiedje (14711)
Alexandre S. Rosado (195326)

March 2013

The relative frequencies of the different classes found in Cerrado (CE), Green Cane (GC) and Burn...

Taxonomic classification of bacterial reads retrieved from different wells at phylum (A) and genus (B) levels from 16S rRNA gene pyrosequencing.

Nesrine Lenchi (425064)
Özgül İnceoğlu (208805)
Salima Kebbouche-Gana (425065)
Mohamed Lamine Gana (425066)
Marc Llirós (425067)
Pierre Servais (425068)
Tamara García-Armisen (425069)

June 2013

Taxonomic classification of bacterial reads retrieved from different wells at phylum (A) and genu...

Comparison of the taxonomic distribution of virulence genes and randomly selected genes of B. melitensis 16 M within Proteobacteria group.

Aniel Jessica Leticia Brambila-Tapia (588553)
Dagoberto Armenta-Medina (588554)
Nancy Rivera-Gomez (588555)
Ernesto Perez-Rueda (3273120)

June 2014

N = Number, A.P.: adjusted percentage, this is the corresponding percentage of the number of ort...

Taxonomic comparison within Proteobacteria of total metagenomic sequences based on predicted proteins using BLASTX against different databases in MG-RAST v3.0 server.

Diego Javier Jiménez (113752)
Fernando Dini Andreote (113754)
Diego Chaves (113756)
José Salvador Montaña (113759)
Cesar Osorio-Forero (113760)
Howard Junca (113763)
María Mercedes Zambrano (113765)
Sandra Baena (113767)

December 2012

a) Gammaproteobacteria b) Alphaproteobacteria c) Betaproteobacteria.</p

Class level distribution of sequences affiliated to the phylum Bacteroidetes based on the 16S rRNA gene clone libraries from anaerobic- aerobic reactors and three constructed wetland sites.

Adey Feleke Desta (679102)
Fassil Assefa (679103)
Seyoum Leta (679104)
Francesca Stomeo (679105)
Mark Wamalwa (679106)
Moses Njahira (679107)
Djikeng Appolinaire (679108)

December 2014

Class level distribution of sequences affiliated to the phylum Bacteroidetes based on the 16S rRN...

Average relative abundance of dominant bacterial taxa by plot.

Leah C. Blasiak (510919)
Alex W. Schmidt (510920)
Honoré Andriamiarinoro (510921)
Temesgen Mulaw (510922)
Rado Rasolomampianina (510923)
Wendy L. Applequist (510924)
Chris Birkinshaw (510925)
Félicitée Rejo-Fienena (510926)
Porter P. Lowry II (510927)
Thomas M. Schmidt (510928)
Russell T. Hill (426522)

January 2014

Sequences in 3% OTUs were classified and grouped at the phylum level, with Proteobacteria ...

Vertical distribution of taxonomic assignments.

Harald Schunck (448854)
Gaute Lavik (336677)
Dhwani K. Desai (448855)
Tobias Großkopf (362107)
Tim Kalvelage (336668)
Carolin R. Löscher (448856)
Aurélien Paulmier (448857)
Sergio Contreras (336671)
Herbert Siegel (448858)
Moritz Holtappels (448859)
Philip Rosenstiel (68103)
Markus B. Schilhabel (127863)
Michelle Graco (190980)
Ruth A. Schmitz (448860)
Marcel M. M. Kuypers (336680)
Julie LaRoche (235849)

August 2013

Shown on either domain, phylum or class level. (A) rRNA genes in percent of all rRNA genes (5,923...

Bacterial phylotypes at the Class level with differing abundance between Vohibe high impact (V1) and low impact (V2) sites (Metastats p<0.05).

Leah C. Blasiak (510919)
Alex W. Schmidt (510920)
Honoré Andriamiarinoro (510921)
Temesgen Mulaw (510922)
Rado Rasolomampianina (510923)
Wendy L. Applequist (510924)
Chris Birkinshaw (510925)
Félicitée Rejo-Fienena (510926)
Porter P. Lowry II (510927)
Thomas M. Schmidt (510928)
Russell T. Hill (426522)

January 2014

Bacterial phylotypes at the Class level with differing abundance between Vohibe high impact (V1) ...

Comparison of class level taxonomic distribution of proteobacterial reads between V1-V3 and V3-V4 target regions.

Abstract

Extracted data

Comparison of class level taxonomic distribution of proteobacterial reads between V1-V3 and V3-V4 target regions.

Abstract

Extracted data

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